data_2EXX # _model_server_result.job_id oTEsL9CNPCLR4od9b-0edg _model_server_result.datetime_utc '2024-11-22 14:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2exx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3698}' # _entry.id 2EXX # _exptl.entry_id 2EXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2EXX _cell.length_a 223.3 _cell.length_b 223.3 _cell.length_c 223.3 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2EXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 85 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 92 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 85 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 2EXX _atom_sites.fract_transf_matrix[1][1] 0.004478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 3698 3698 NAP NAP . D 3 GOL A 1 2647 2647 GOL GOL . E 4 HOH A 1 3699 1 HOH TIP . E 4 HOH A 2 3700 2 HOH TIP . E 4 HOH A 3 3701 3 HOH TIP . E 4 HOH A 4 3702 4 HOH TIP . E 4 HOH A 5 3703 5 HOH TIP . E 4 HOH A 6 3704 6 HOH TIP . E 4 HOH A 7 3705 7 HOH TIP . E 4 HOH A 8 3706 8 HOH TIP . E 4 HOH A 9 3707 9 HOH TIP . E 4 HOH A 10 3708 11 HOH TIP . E 4 HOH A 11 3709 12 HOH TIP . E 4 HOH A 12 3710 13 HOH TIP . E 4 HOH A 13 3711 14 HOH TIP . E 4 HOH A 14 3712 16 HOH TIP . E 4 HOH A 15 3713 17 HOH TIP . E 4 HOH A 16 3714 20 HOH TIP . E 4 HOH A 17 3715 21 HOH TIP . E 4 HOH A 18 3716 24 HOH TIP . E 4 HOH A 19 3717 25 HOH TIP . E 4 HOH A 20 3718 26 HOH TIP . E 4 HOH A 21 3719 27 HOH TIP . E 4 HOH A 22 3720 31 HOH TIP . E 4 HOH A 23 3721 32 HOH TIP . E 4 HOH A 24 3722 33 HOH TIP . E 4 HOH A 25 3723 34 HOH TIP . E 4 HOH A 26 3724 35 HOH TIP . E 4 HOH A 27 3725 36 HOH TIP . E 4 HOH A 28 3726 37 HOH TIP . E 4 HOH A 29 3727 40 HOH TIP . E 4 HOH A 30 3728 41 HOH TIP . E 4 HOH A 31 3729 43 HOH TIP . E 4 HOH A 32 3730 45 HOH TIP . E 4 HOH A 33 3731 46 HOH TIP . E 4 HOH A 34 3732 49 HOH TIP . E 4 HOH A 35 3733 51 HOH TIP . E 4 HOH A 36 3734 52 HOH TIP . E 4 HOH A 37 3735 54 HOH TIP . E 4 HOH A 38 3736 55 HOH TIP . E 4 HOH A 39 3737 56 HOH TIP . E 4 HOH A 40 3738 58 HOH TIP . E 4 HOH A 41 3739 59 HOH TIP . E 4 HOH A 42 3740 60 HOH TIP . E 4 HOH A 43 3741 62 HOH TIP . E 4 HOH A 44 3742 63 HOH TIP . E 4 HOH A 45 3743 64 HOH TIP . E 4 HOH A 46 3744 68 HOH TIP . E 4 HOH A 47 3745 69 HOH TIP . E 4 HOH A 48 3746 71 HOH TIP . E 4 HOH A 49 3747 72 HOH TIP . E 4 HOH A 50 3748 73 HOH TIP . E 4 HOH A 51 3749 74 HOH TIP . E 4 HOH A 52 3750 75 HOH TIP . E 4 HOH A 53 3751 76 HOH TIP . E 4 HOH A 54 3752 78 HOH TIP . E 4 HOH A 55 3753 79 HOH TIP . E 4 HOH A 56 3754 80 HOH TIP . E 4 HOH A 57 3755 82 HOH TIP . E 4 HOH A 58 3756 84 HOH TIP . E 4 HOH A 59 3757 85 HOH TIP . E 4 HOH A 60 3758 86 HOH TIP . E 4 HOH A 61 3759 87 HOH TIP . E 4 HOH A 62 3760 88 HOH TIP . E 4 HOH A 63 3761 90 HOH TIP . F 4 HOH B 1 300 10 HOH TIP . F 4 HOH B 2 301 15 HOH TIP . F 4 HOH B 3 302 18 HOH TIP . F 4 HOH B 4 303 19 HOH TIP . F 4 HOH B 5 304 22 HOH TIP . F 4 HOH B 6 305 23 HOH TIP . F 4 HOH B 7 306 28 HOH TIP . F 4 HOH B 8 307 29 HOH TIP . F 4 HOH B 9 308 30 HOH TIP . F 4 HOH B 10 309 38 HOH TIP . F 4 HOH B 11 310 39 HOH TIP . F 4 HOH B 12 311 42 HOH TIP . F 4 HOH B 13 312 44 HOH TIP . F 4 HOH B 14 313 47 HOH TIP . F 4 HOH B 15 314 48 HOH TIP . F 4 HOH B 16 315 50 HOH TIP . F 4 HOH B 17 316 53 HOH TIP . F 4 HOH B 18 317 57 HOH TIP . F 4 HOH B 19 318 61 HOH TIP . F 4 HOH B 20 319 65 HOH TIP . F 4 HOH B 21 320 66 HOH TIP . F 4 HOH B 22 321 67 HOH TIP . F 4 HOH B 23 322 70 HOH TIP . F 4 HOH B 24 323 77 HOH TIP . F 4 HOH B 25 324 81 HOH TIP . F 4 HOH B 26 325 83 HOH TIP . F 4 HOH B 27 326 89 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 73.448 35.248 106.972 1 27.01 ? PA NAP 3698 A 1 HETATM 2 O O1A NAP . . . C 2 73.635 35.38 108.425 1 37.59 ? O1A NAP 3698 A 1 HETATM 3 O O2A NAP . . . C 2 74.37 35.68 105.927 1 28.9 ? O2A NAP 3698 A 1 HETATM 4 O O5B NAP . . . C 2 71.881 35.582 106.748 1 31.71 ? O5B NAP 3698 A 1 HETATM 5 C C5B NAP . . . C 2 71.39 35.838 105.44 1 32.22 ? C5B NAP 3698 A 1 HETATM 6 C C4B NAP . . . C 2 69.888 35.854 105.313 1 32.01 ? C4B NAP 3698 A 1 HETATM 7 O O4B NAP . . . C 2 68.853 36.146 106.334 1 29.28 ? O4B NAP 3698 A 1 HETATM 8 C C3B NAP . . . C 2 69.462 36.448 103.999 1 31.33 ? C3B NAP 3698 A 1 HETATM 9 O O3B NAP . . . C 2 68.918 35.5 103.133 1 36.61 ? O3B NAP 3698 A 1 HETATM 10 C C2B NAP . . . C 2 68.5 37.523 104.532 1 28.61 ? C2B NAP 3698 A 1 HETATM 11 O O2B NAP . . . C 2 67.692 38.111 103.567 1 28.44 ? O2B NAP 3698 A 1 HETATM 12 C C1B NAP . . . C 2 67.778 36.738 105.556 1 26.83 ? C1B NAP 3698 A 1 HETATM 13 N N9A NAP . . . C 2 66.831 37.4 106.466 1 24.64 ? N9A NAP 3698 A 1 HETATM 14 C C8A NAP . . . C 2 67.081 37.897 107.723 1 23.53 ? C8A NAP 3698 A 1 HETATM 15 N N7A NAP . . . C 2 66.004 38.417 108.308 1 22.74 ? N7A NAP 3698 A 1 HETATM 16 C C5A NAP . . . C 2 65.025 38.244 107.403 1 20.97 ? C5A NAP 3698 A 1 HETATM 17 C C6A NAP . . . C 2 63.647 38.591 107.452 1 20.48 ? C6A NAP 3698 A 1 HETATM 18 N N6A NAP . . . C 2 63.085 39.175 108.502 1 21.14 ? N6A NAP 3698 A 1 HETATM 19 N N1A NAP . . . C 2 62.903 38.274 106.339 1 20.33 ? N1A NAP 3698 A 1 HETATM 20 C C2A NAP . . . C 2 63.444 37.671 105.251 1 18.6 ? C2A NAP 3698 A 1 HETATM 21 N N3A NAP . . . C 2 64.763 37.3 105.118 1 18.92 ? N3A NAP 3698 A 1 HETATM 22 C C4A NAP . . . C 2 65.514 37.618 106.243 1 20.53 ? C4A NAP 3698 A 1 HETATM 23 O O3 NAP . . . C 2 73.07 33.706 106.955 1 30.95 ? O3 NAP 3698 A 1 HETATM 24 P PN NAP . . . C 2 73.574 32.252 107.022 1 26.25 ? PN NAP 3698 A 1 HETATM 25 O O1N NAP . . . C 2 72.771 31.295 106.239 1 28.82 ? O1N NAP 3698 A 1 HETATM 26 O O2N NAP . . . C 2 74.554 31.932 108.113 1 23.25 ? O2N NAP 3698 A 1 HETATM 27 O O5D NAP . . . C 2 72.474 32.032 108.214 1 25.67 ? O5D NAP 3698 A 1 HETATM 28 C C5D NAP . . . C 2 72.689 32.312 109.647 1 31.18 ? C5D NAP 3698 A 1 HETATM 29 C C4D NAP . . . C 2 71.819 31.484 110.564 1 26.84 ? C4D NAP 3698 A 1 HETATM 30 O O4D NAP . . . C 2 72.186 30.067 110.663 1 28.52 ? O4D NAP 3698 A 1 HETATM 31 C C3D NAP . . . C 2 71.68 31.988 112.029 1 29.08 ? C3D NAP 3698 A 1 HETATM 32 O O3D NAP . . . C 2 70.36 32.162 112.456 1 25.33 ? O3D NAP 3698 A 1 HETATM 33 C C2D NAP . . . C 2 72.506 31.003 112.842 1 26.13 ? C2D NAP 3698 A 1 HETATM 34 O O2D NAP . . . C 2 71.946 30.805 114.147 1 26.61 ? O2D NAP 3698 A 1 HETATM 35 C C1D NAP . . . C 2 72.508 29.745 112.001 1 26.06 ? C1D NAP 3698 A 1 HETATM 36 N N1N NAP . . . C 2 73.736 28.904 112.141 1 20.73 ? N1N NAP 3698 A 1 HETATM 37 C C2N NAP . . . C 2 74.998 29.432 112.043 1 19.71 ? C2N NAP 3698 A 1 HETATM 38 C C3N NAP . . . C 2 76.123 28.632 112.195 1 19.29 ? C3N NAP 3698 A 1 HETATM 39 C C7N NAP . . . C 2 77.535 29.164 112.098 1 18.13 ? C7N NAP 3698 A 1 HETATM 40 O O7N NAP . . . C 2 78.476 28.428 112.42 1 18.75 ? O7N NAP 3698 A 1 HETATM 41 N N7N NAP . . . C 2 77.673 30.43 111.668 1 14.99 ? N7N NAP 3698 A 1 HETATM 42 C C4N NAP . . . C 2 75.948 27.215 112.462 1 20.85 ? C4N NAP 3698 A 1 HETATM 43 C C5N NAP . . . C 2 74.643 26.698 112.558 1 21.2 ? C5N NAP 3698 A 1 HETATM 44 C C6N NAP . . . C 2 73.556 27.523 112.404 1 21.11 ? C6N NAP 3698 A 1 HETATM 45 P P2B NAP . . . C 2 67.758 39.695 103.336 1 25.58 ? P2B NAP 3698 A 1 HETATM 46 O O1X NAP . . . C 2 69.022 40.459 103.396 1 28.07 ? O1X NAP 3698 A 1 HETATM 47 O O2X NAP . . . C 2 66.499 40.163 102.636 1 30.44 ? O2X NAP 3698 A 1 HETATM 48 O O3X NAP . . . C 2 68.265 39.248 101.974 1 26.52 ? O3X NAP 3698 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #