data_2F11 # _model_server_result.job_id md-NfFWiS8srfVfyXahv4w _model_server_result.datetime_utc '2024-12-22 05:11:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":382}' # _entry.id 2F11 # _exptl.entry_id 2F11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.282 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methylpropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F11 _cell.length_a 86.98 _cell.length_b 87.7 _cell.length_c 92.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H19 N O6' _chem_comp.formula_weight 273.282 _chem_comp.id IEM _chem_comp.mon_nstd_flag . _chem_comp.name '2-methylpropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms '5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-6-ISOBUTOXY-4H-PYRAN-2-CARBOXYLIC ACID;ISOBUTYL ETHER MIMETIC;2-methylpropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enosiduronic acid;2-methylpropyl 2-acetamido-2,4-dideoxy-L-threo-hex-4-enosiduronic acid;2-methylpropyl 2-acetamido-2,4-dideoxy-threo-hex-4-enosiduronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IEM sing 152 n n C1 O1A IEM doub 153 n n C1 O1B IEM sing 154 n n C2 C3 IEM doub 155 n n C2 O6 IEM sing 156 n n C3 C4 IEM sing 157 n n C3 H3 IEM sing 158 n n C4 C5 IEM sing 159 n n C4 O4 IEM sing 160 n n C4 H4 IEM sing 161 n n C5 C6 IEM sing 162 n n C5 N5 IEM sing 163 n n C5 H5 IEM sing 164 n n C6 O7 IEM sing 165 n n C6 O6 IEM sing 166 n n C6 H6 IEM sing 167 n n O7 C7 IEM sing 168 n n C7 C8 IEM sing 169 n n C7 H71 IEM sing 170 n n C7 H72 IEM sing 171 n n C8 C9 IEM sing 172 n n C8 C10 IEM sing 173 n n C8 H8 IEM sing 174 n n C9 H91 IEM sing 175 n n C9 H92 IEM sing 176 n n C9 H93 IEM sing 177 n n C10 H101 IEM sing 178 n n C10 H102 IEM sing 179 n n C10 H103 IEM sing 180 n n C11 C12 IEM sing 181 n n C11 N5 IEM sing 182 n n C11 O11 IEM doub 183 n n C12 H121 IEM sing 184 n n C12 H122 IEM sing 185 n n C12 H123 IEM sing 186 n n N5 HN5 IEM sing 187 n n O4 HO4 IEM sing 188 n n O1B HO1B IEM sing 189 n n # _atom_sites.entry_id 2F11 _atom_sites.fract_transf_matrix[1][1] 0.011497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 381 2 PO4 PO4 . C 3 IEM A 1 382 1 IEM IEM . D 4 HOH A 1 383 1 HOH HOH . D 4 HOH A 2 384 2 HOH HOH . D 4 HOH A 3 385 3 HOH HOH . D 4 HOH A 4 386 4 HOH HOH . D 4 HOH A 5 387 5 HOH HOH . D 4 HOH A 6 388 6 HOH HOH . D 4 HOH A 7 389 7 HOH HOH . D 4 HOH A 8 390 8 HOH HOH . D 4 HOH A 9 391 9 HOH HOH . D 4 HOH A 10 392 10 HOH HOH . D 4 HOH A 11 393 11 HOH HOH . D 4 HOH A 12 394 12 HOH HOH . D 4 HOH A 13 395 13 HOH HOH . D 4 HOH A 14 396 14 HOH HOH . D 4 HOH A 15 397 15 HOH HOH . D 4 HOH A 16 398 16 HOH HOH . D 4 HOH A 17 399 17 HOH HOH . D 4 HOH A 18 400 18 HOH HOH . D 4 HOH A 19 401 19 HOH HOH . D 4 HOH A 20 402 20 HOH HOH . D 4 HOH A 21 403 21 HOH HOH . D 4 HOH A 22 404 22 HOH HOH . D 4 HOH A 23 405 23 HOH HOH . D 4 HOH A 24 406 24 HOH HOH . D 4 HOH A 25 407 25 HOH HOH . D 4 HOH A 26 408 26 HOH HOH . D 4 HOH A 27 409 27 HOH HOH . D 4 HOH A 28 410 28 HOH HOH . D 4 HOH A 29 411 29 HOH HOH . D 4 HOH A 30 412 30 HOH HOH . D 4 HOH A 31 413 31 HOH HOH . D 4 HOH A 32 414 32 HOH HOH . D 4 HOH A 33 415 33 HOH HOH . D 4 HOH A 34 416 34 HOH HOH . D 4 HOH A 35 417 35 HOH HOH . D 4 HOH A 36 418 36 HOH HOH . D 4 HOH A 37 419 37 HOH HOH . D 4 HOH A 38 420 38 HOH HOH . D 4 HOH A 39 421 39 HOH HOH . D 4 HOH A 40 422 40 HOH HOH . D 4 HOH A 41 423 41 HOH HOH . D 4 HOH A 42 424 42 HOH HOH . D 4 HOH A 43 425 43 HOH HOH . D 4 HOH A 44 426 44 HOH HOH . D 4 HOH A 45 427 45 HOH HOH . D 4 HOH A 46 428 46 HOH HOH . D 4 HOH A 47 429 47 HOH HOH . D 4 HOH A 48 430 48 HOH HOH . D 4 HOH A 49 431 49 HOH HOH . D 4 HOH A 50 432 50 HOH HOH . D 4 HOH A 51 433 51 HOH HOH . D 4 HOH A 52 434 52 HOH HOH . D 4 HOH A 53 435 53 HOH HOH . D 4 HOH A 54 436 54 HOH HOH . D 4 HOH A 55 437 55 HOH HOH . D 4 HOH A 56 438 56 HOH HOH . D 4 HOH A 57 439 57 HOH HOH . D 4 HOH A 58 440 58 HOH HOH . D 4 HOH A 59 441 59 HOH HOH . D 4 HOH A 60 442 60 HOH HOH . D 4 HOH A 61 443 61 HOH HOH . D 4 HOH A 62 444 62 HOH HOH . D 4 HOH A 63 445 63 HOH HOH . D 4 HOH A 64 446 64 HOH HOH . D 4 HOH A 65 447 65 HOH HOH . D 4 HOH A 66 448 66 HOH HOH . D 4 HOH A 67 449 67 HOH HOH . D 4 HOH A 68 450 68 HOH HOH . D 4 HOH A 69 451 69 HOH HOH . D 4 HOH A 70 452 70 HOH HOH . D 4 HOH A 71 453 71 HOH HOH . D 4 HOH A 72 454 72 HOH HOH . D 4 HOH A 73 455 73 HOH HOH . D 4 HOH A 74 456 74 HOH HOH . D 4 HOH A 75 457 75 HOH HOH . D 4 HOH A 76 458 76 HOH HOH . D 4 HOH A 77 459 77 HOH HOH . D 4 HOH A 78 460 78 HOH HOH . D 4 HOH A 79 461 79 HOH HOH . D 4 HOH A 80 462 80 HOH HOH . D 4 HOH A 81 463 81 HOH HOH . D 4 HOH A 82 464 82 HOH HOH . D 4 HOH A 83 465 83 HOH HOH . D 4 HOH A 84 466 84 HOH HOH . D 4 HOH A 85 467 85 HOH HOH . D 4 HOH A 86 468 86 HOH HOH . D 4 HOH A 87 469 87 HOH HOH . D 4 HOH A 88 470 88 HOH HOH . D 4 HOH A 89 471 89 HOH HOH . D 4 HOH A 90 472 90 HOH HOH . D 4 HOH A 91 473 91 HOH HOH . D 4 HOH A 92 474 92 HOH HOH . D 4 HOH A 93 475 93 HOH HOH . D 4 HOH A 94 476 94 HOH HOH . D 4 HOH A 95 477 95 HOH HOH . D 4 HOH A 96 478 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IEM . . . C 3 34.226 30.383 24.433 1 50.95 ? C1 IEM 382 A 1 HETATM 2 C C2 IEM . . . C 3 34.011 30.336 25.842 1 52.74 ? C2 IEM 382 A 1 HETATM 3 C C3 IEM . . . C 3 33.192 31.448 26.593 1 54.9 ? C3 IEM 382 A 1 HETATM 4 C C4 IEM . . . C 3 32.625 30.88 27.943 1 55.82 ? C4 IEM 382 A 1 HETATM 5 C C5 IEM . . . C 3 33.586 29.909 28.668 1 56.37 ? C5 IEM 382 A 1 HETATM 6 C C6 IEM . . . C 3 33.894 28.762 27.664 1 56.07 ? C6 IEM 382 A 1 HETATM 7 O O7 IEM . . . C 3 34.821 27.658 28.198 1 55.92 ? O7 IEM 382 A 1 HETATM 8 C C7 IEM . . . C 3 35.106 26.548 27.151 1 56.64 ? C7 IEM 382 A 1 HETATM 9 C C8 IEM . . . C 3 36.05 25.48 27.711 1 58.35 ? C8 IEM 382 A 1 HETATM 10 C C9 IEM . . . C 3 36.478 24.572 26.57 1 57.97 ? C9 IEM 382 A 1 HETATM 11 C C10 IEM . . . C 3 35.335 24.701 28.805 1 60.31 ? C10 IEM 382 A 1 HETATM 12 C C11 IEM . . . C 3 33.375 29.607 31.166 1 57.27 ? C11 IEM 382 A 1 HETATM 13 C C12 IEM . . . C 3 32.58 29.048 32.323 1 55.95 ? C12 IEM 382 A 1 HETATM 14 N N5 IEM . . . C 3 32.918 29.43 29.904 1 57.44 ? N5 IEM 382 A 1 HETATM 15 O O1A IEM . . . C 3 34.541 29.268 23.709 1 49.25 ? O1A IEM 382 A 1 HETATM 16 O O1B IEM . . . C 3 34.142 31.501 23.799 1 51.77 ? O1B IEM 382 A 1 HETATM 17 O O4 IEM . . . C 3 32.305 31.991 28.782 1 53.07 ? O4 IEM 382 A 1 HETATM 18 O O6 IEM . . . C 3 34.56 29.347 26.478 1 55.84 ? O6 IEM 382 A 1 HETATM 19 O O11 IEM . . . C 3 34.545 30.276 31.468 1 57.12 ? O11 IEM 382 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 19 #