data_2F12 # _model_server_result.job_id f21SFuZLu9tBCWPtiDIWWw _model_server_result.datetime_utc '2024-12-21 11:50:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2F12 # _exptl.entry_id 2F12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.255 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-hydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F12 _cell.length_a 87.59 _cell.length_b 87.97 _cell.length_c 92.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N O7' _chem_comp.formula_weight 275.255 _chem_comp.id HTM _chem_comp.mon_nstd_flag . _chem_comp.name '3-hydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enopyranosiduronic acid' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms '6-(3-HYDROXYPROPOXY)-5-ACETAMIDO-5,6-DIHYDRO-4-HYDROXY-4H-PYRAN-2-CARBOXYLIC ACID;3-HYDROXYPROPYL ETHER MIMETIC;3-hydroxypropyl 2-acetamido-2,4-dideoxy-alpha-L-threo-hex-4-enosiduronic acid;3-hydroxypropyl 2-acetamido-2,4-dideoxy-L-threo-hex-4-enosiduronic acid;3-hydroxypropyl 2-acetamido-2,4-dideoxy-threo-hex-4-enosiduronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1A C1 HTM doub 152 n n C1 C2 HTM sing 153 n n C1 O1B HTM sing 154 n n C2 C3 HTM doub 155 n n C2 O6 HTM sing 156 n n C3 C4 HTM sing 157 n n C3 H3 HTM sing 158 n n C4 C5 HTM sing 159 n n C4 O4 HTM sing 160 n n C4 H4 HTM sing 161 n n C5 C6 HTM sing 162 n n C5 N5 HTM sing 163 n n C5 H5 HTM sing 164 n n C6 O6 HTM sing 165 n n C6 O7 HTM sing 166 n n C6 H6 HTM sing 167 n n C7 C8 HTM sing 168 n n C7 O7 HTM sing 169 n n C7 H71 HTM sing 170 n n C7 H72 HTM sing 171 n n C8 C9 HTM sing 172 n n C8 H81 HTM sing 173 n n C8 H82 HTM sing 174 n n C9 O9 HTM sing 175 n n C9 H91 HTM sing 176 n n C9 H92 HTM sing 177 n n C10 C11 HTM sing 178 n n C10 N5 HTM sing 179 n n C10 O10 HTM doub 180 n n C11 H111 HTM sing 181 n n C11 H112 HTM sing 182 n n C11 H113 HTM sing 183 n n N5 HN5 HTM sing 184 n n O4 HO4 HTM sing 185 n n O9 HO9 HTM sing 186 n n O1B HO1B HTM sing 187 n n # _atom_sites.entry_id 2F12 _atom_sites.fract_transf_matrix[1][1] 0.011417 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 1002 1002 PO4 PO4 . C 3 HTM A 1 1001 1001 HTM HTM . D 4 HOH A 1 1003 1 HOH TIP . D 4 HOH A 2 1004 2 HOH TIP . D 4 HOH A 3 1005 3 HOH TIP . D 4 HOH A 4 1006 4 HOH TIP . D 4 HOH A 5 1007 5 HOH TIP . D 4 HOH A 6 1008 6 HOH TIP . D 4 HOH A 7 1009 7 HOH TIP . D 4 HOH A 8 1010 8 HOH TIP . D 4 HOH A 9 1011 9 HOH TIP . D 4 HOH A 10 1012 10 HOH TIP . D 4 HOH A 11 1013 11 HOH TIP . D 4 HOH A 12 1014 12 HOH TIP . D 4 HOH A 13 1015 13 HOH TIP . D 4 HOH A 14 1016 14 HOH TIP . D 4 HOH A 15 1017 15 HOH TIP . D 4 HOH A 16 1018 16 HOH TIP . D 4 HOH A 17 1019 17 HOH TIP . D 4 HOH A 18 1020 18 HOH TIP . D 4 HOH A 19 1021 19 HOH TIP . D 4 HOH A 20 1022 20 HOH TIP . D 4 HOH A 21 1023 21 HOH TIP . D 4 HOH A 22 1024 22 HOH TIP . D 4 HOH A 23 1025 23 HOH TIP . D 4 HOH A 24 1026 24 HOH TIP . D 4 HOH A 25 1027 25 HOH TIP . D 4 HOH A 26 1028 26 HOH TIP . D 4 HOH A 27 1029 27 HOH TIP . D 4 HOH A 28 1030 28 HOH TIP . D 4 HOH A 29 1031 29 HOH TIP . D 4 HOH A 30 1032 30 HOH TIP . D 4 HOH A 31 1033 31 HOH TIP . D 4 HOH A 32 1034 32 HOH TIP . D 4 HOH A 33 1035 33 HOH TIP . D 4 HOH A 34 1036 34 HOH TIP . D 4 HOH A 35 1037 35 HOH TIP . D 4 HOH A 36 1038 36 HOH TIP . D 4 HOH A 37 1039 37 HOH TIP . D 4 HOH A 38 1040 38 HOH TIP . D 4 HOH A 39 1041 39 HOH TIP . D 4 HOH A 40 1042 40 HOH TIP . D 4 HOH A 41 1043 41 HOH TIP . D 4 HOH A 42 1044 42 HOH TIP . D 4 HOH A 43 1045 43 HOH TIP . D 4 HOH A 44 1046 44 HOH TIP . D 4 HOH A 45 1047 45 HOH TIP . D 4 HOH A 46 1048 46 HOH TIP . D 4 HOH A 47 1049 47 HOH TIP . D 4 HOH A 48 1050 48 HOH TIP . D 4 HOH A 49 1051 49 HOH TIP . D 4 HOH A 50 1052 50 HOH TIP . D 4 HOH A 51 1053 51 HOH TIP . D 4 HOH A 52 1054 52 HOH TIP . D 4 HOH A 53 1055 53 HOH TIP . D 4 HOH A 54 1056 54 HOH TIP . D 4 HOH A 55 1057 55 HOH TIP . D 4 HOH A 56 1058 56 HOH TIP . D 4 HOH A 57 1059 57 HOH TIP . D 4 HOH A 58 1060 58 HOH TIP . D 4 HOH A 59 1061 59 HOH TIP . D 4 HOH A 60 1062 60 HOH TIP . D 4 HOH A 61 1063 61 HOH TIP . D 4 HOH A 62 1064 62 HOH TIP . D 4 HOH A 63 1065 63 HOH TIP . D 4 HOH A 64 1066 64 HOH TIP . D 4 HOH A 65 1067 65 HOH TIP . D 4 HOH A 66 1068 66 HOH TIP . D 4 HOH A 67 1069 67 HOH TIP . D 4 HOH A 68 1070 68 HOH TIP . D 4 HOH A 69 1071 69 HOH TIP . D 4 HOH A 70 1072 70 HOH TIP . D 4 HOH A 71 1073 71 HOH TIP . D 4 HOH A 72 1074 72 HOH TIP . D 4 HOH A 73 1075 73 HOH TIP . D 4 HOH A 74 1076 74 HOH TIP . D 4 HOH A 75 1077 75 HOH TIP . D 4 HOH A 76 1078 76 HOH TIP . D 4 HOH A 77 1079 77 HOH TIP . D 4 HOH A 78 1080 78 HOH TIP . D 4 HOH A 79 1081 79 HOH TIP . D 4 HOH A 80 1082 80 HOH TIP . D 4 HOH A 81 1083 81 HOH TIP . D 4 HOH A 82 1084 82 HOH TIP . D 4 HOH A 83 1085 83 HOH TIP . D 4 HOH A 84 1086 84 HOH TIP . D 4 HOH A 85 1087 85 HOH TIP . D 4 HOH A 86 1088 86 HOH TIP . D 4 HOH A 87 1089 87 HOH TIP . D 4 HOH A 88 1090 88 HOH TIP . D 4 HOH A 89 1091 89 HOH TIP . D 4 HOH A 90 1092 90 HOH TIP . D 4 HOH A 91 1093 91 HOH TIP . D 4 HOH A 92 1094 92 HOH TIP . D 4 HOH A 93 1095 93 HOH TIP . D 4 HOH A 94 1096 94 HOH TIP . D 4 HOH A 95 1097 95 HOH TIP . D 4 HOH A 96 1098 96 HOH TIP . D 4 HOH A 97 1099 97 HOH TIP . D 4 HOH A 98 1100 98 HOH TIP . D 4 HOH A 99 1101 99 HOH TIP . D 4 HOH A 100 1102 100 HOH TIP . D 4 HOH A 101 1103 101 HOH TIP . D 4 HOH A 102 1104 102 HOH TIP . D 4 HOH A 103 1105 103 HOH TIP . D 4 HOH A 104 1106 104 HOH TIP . D 4 HOH A 105 1107 105 HOH TIP . D 4 HOH A 106 1108 106 HOH TIP . D 4 HOH A 107 1109 107 HOH TIP . D 4 HOH A 108 1110 108 HOH TIP . D 4 HOH A 109 1111 109 HOH TIP . D 4 HOH A 110 1112 110 HOH TIP . D 4 HOH A 111 1113 111 HOH TIP . D 4 HOH A 112 1114 112 HOH TIP . D 4 HOH A 113 1115 113 HOH TIP . D 4 HOH A 114 1116 114 HOH TIP . D 4 HOH A 115 1117 115 HOH TIP . D 4 HOH A 116 1118 116 HOH TIP . D 4 HOH A 117 1119 117 HOH TIP . D 4 HOH A 118 1120 118 HOH TIP . D 4 HOH A 119 1121 119 HOH TIP . D 4 HOH A 120 1122 120 HOH TIP . D 4 HOH A 121 1123 121 HOH TIP . D 4 HOH A 122 1124 122 HOH TIP . D 4 HOH A 123 1125 123 HOH TIP . D 4 HOH A 124 1126 124 HOH TIP . D 4 HOH A 125 1127 125 HOH TIP . D 4 HOH A 126 1128 126 HOH TIP . D 4 HOH A 127 1129 127 HOH TIP . D 4 HOH A 128 1130 128 HOH TIP . D 4 HOH A 129 1131 129 HOH TIP . D 4 HOH A 130 1132 130 HOH TIP . D 4 HOH A 131 1133 131 HOH TIP . D 4 HOH A 132 1134 132 HOH TIP . D 4 HOH A 133 1135 133 HOH TIP . D 4 HOH A 134 1136 134 HOH TIP . D 4 HOH A 135 1137 135 HOH TIP . D 4 HOH A 136 1138 136 HOH TIP . D 4 HOH A 137 1139 137 HOH TIP . D 4 HOH A 138 1140 138 HOH TIP . D 4 HOH A 139 1141 139 HOH TIP . D 4 HOH A 140 1142 140 HOH TIP . D 4 HOH A 141 1143 141 HOH TIP . D 4 HOH A 142 1144 142 HOH TIP . D 4 HOH A 143 1145 143 HOH TIP . D 4 HOH A 144 1146 144 HOH TIP . D 4 HOH A 145 1147 145 HOH TIP . D 4 HOH A 146 1148 146 HOH TIP . D 4 HOH A 147 1149 147 HOH TIP . D 4 HOH A 148 1150 148 HOH TIP . D 4 HOH A 149 1151 149 HOH TIP . D 4 HOH A 150 1152 150 HOH TIP . D 4 HOH A 151 1153 151 HOH TIP . D 4 HOH A 152 1154 152 HOH TIP . D 4 HOH A 153 1155 153 HOH TIP . D 4 HOH A 154 1156 154 HOH TIP . D 4 HOH A 155 1157 155 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1A HTM . . . C 3 8.873 14.552 24.009 1 29.36 ? O1A HTM 1001 A 1 HETATM 2 C C1 HTM . . . C 3 9.591 13.593 24.664 1 32.04 ? C1 HTM 1001 A 1 HETATM 3 C C2 HTM . . . C 3 10.005 13.777 26.009 1 36.39 ? C2 HTM 1001 A 1 HETATM 4 C C3 HTM . . . C 3 10.821 12.701 26.737 1 38.86 ? C3 HTM 1001 A 1 HETATM 5 C C4 HTM . . . C 3 11.208 13.142 28.193 1 40.58 ? C4 HTM 1001 A 1 HETATM 6 C C5 HTM . . . C 3 10.174 14.101 28.798 1 43.47 ? C5 HTM 1001 A 1 HETATM 7 C C6 HTM . . . C 3 10.067 15.345 27.872 1 42.99 ? C6 HTM 1001 A 1 HETATM 8 C C7 HTM . . . C 3 8.875 17.617 27.465 1 49.17 ? C7 HTM 1001 A 1 HETATM 9 C C8 HTM . . . C 3 7.796 18.595 27.965 1 51.04 ? C8 HTM 1001 A 1 HETATM 10 C C9 HTM . . . C 3 6.469 18.318 27.596 1 53.3 ? C9 HTM 1001 A 1 HETATM 11 C C10 HTM . . . C 3 10.045 14.24 31.324 1 46.77 ? C10 HTM 1001 A 1 HETATM 12 C C11 HTM . . . C 3 10.746 14.701 32.58 1 47.96 ? C11 HTM 1001 A 1 HETATM 13 N N5 HTM . . . C 3 10.648 14.454 30.153 1 44.72 ? N5 HTM 1001 A 1 HETATM 14 O O1B HTM . . . C 3 9.892 12.518 24.022 1 30.62 ? O1B HTM 1001 A 1 HETATM 15 O O4 HTM . . . C 3 11.341 11.936 28.995 1 40.15 ? O4 HTM 1001 A 1 HETATM 16 O O6 HTM . . . C 3 9.628 14.919 26.548 1 40.82 ? O6 HTM 1001 A 1 HETATM 17 O O7 HTM . . . C 3 9.022 16.365 28.362 1 45.32 ? O7 HTM 1001 A 1 HETATM 18 O O9 HTM . . . C 3 5.433 19.122 27.986 1 57.27 ? O9 HTM 1001 A 1 HETATM 19 O O10 HTM . . . C 3 8.817 13.622 31.455 1 47.69 ? O10 HTM 1001 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #