data_2F17
#
_model_server_result.job_id            PYF58av5vgKI4qY2vHzxVQ 
_model_server_result.datetime_utc      '2024-12-22 08:17:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    2F17 
#
_exptl.entry_id    2F17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2F17 
_cell.length_a            89.363 
_cell.length_b            89.363 
_cell.length_c            141.43 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 154.781256 94.286667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 66 A ASP 46 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc2 A OD1 ASP 91 A ASP 71 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc3 A OD1 ASP 93 A ASP 73 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 A OD2 ASP 120 A ASP 100 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc5 J O3P AMP . A AMP 301 1_555 C MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc6 C MG MG . A MG 901 1_555 I O2A PYI . A PYI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc7 B OD2 ASP 66 B ASP 46 1_555 K MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc8 B OD2 ASP 91 B ASP 71 1_555 K MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc9 B OD2 ASP 120 B ASP 100 1_555 K MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc10 K MG MG . B MG 902 1_555 M O2S EPE . B EPE 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc11 K MG MG . B MG 902 1_555 N O2A PYI . B PYI 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc12 K MG MG . B MG 902 1_555 N O2B PYI . B PYI 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     2F17 
_atom_sites.fract_transf_matrix[1][1]    0.01119 
_atom_sites.fract_transf_matrix[1][2]    0.006461 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 901 901 MG MG . 
D 3 SO4 A 1 401 401 SO4 SO4 . 
E 3 SO4 A 1 403 403 SO4 SO4 . 
F 3 SO4 A 1 404 404 SO4 SO4 . 
G 3 SO4 A 1 405 405 SO4 SO4 . 
H 3 SO4 A 1 406 406 SO4 SO4 . 
I 4 PYI A 1 902 201 PYI PYI . 
J 5 AMP A 1 301 301 AMP AMP . 
K 2 MG B 1 902 902 MG MG . 
L 3 SO4 B 1 402 402 SO4 SO4 . 
M 6 EPE B 1 2201 2201 EPE EPE . 
N 4 PYI B 1 2202 202 PYI PYI . 
O 7 HOH A 1 903 3 HOH TIP . 
O 7 HOH A 2 904 4 HOH TIP . 
O 7 HOH A 3 905 5 HOH TIP . 
O 7 HOH A 4 906 7 HOH TIP . 
O 7 HOH A 5 907 9 HOH TIP . 
O 7 HOH A 6 908 10 HOH TIP . 
O 7 HOH A 7 909 11 HOH TIP . 
O 7 HOH A 8 910 23 HOH TIP . 
O 7 HOH A 9 911 24 HOH TIP . 
O 7 HOH A 10 912 25 HOH TIP . 
O 7 HOH A 11 913 27 HOH TIP . 
O 7 HOH A 12 914 30 HOH TIP . 
O 7 HOH A 13 915 32 HOH TIP . 
O 7 HOH A 14 916 33 HOH TIP . 
O 7 HOH A 15 917 37 HOH TIP . 
O 7 HOH A 16 918 38 HOH TIP . 
O 7 HOH A 17 919 40 HOH TIP . 
O 7 HOH A 18 920 41 HOH TIP . 
O 7 HOH A 19 921 43 HOH TIP . 
O 7 HOH A 20 922 44 HOH TIP . 
O 7 HOH A 21 923 48 HOH TIP . 
O 7 HOH A 22 924 53 HOH TIP . 
O 7 HOH A 23 925 55 HOH TIP . 
O 7 HOH A 24 926 56 HOH TIP . 
O 7 HOH A 25 927 57 HOH TIP . 
O 7 HOH A 26 928 64 HOH TIP . 
O 7 HOH A 27 929 65 HOH TIP . 
O 7 HOH A 28 930 67 HOH TIP . 
O 7 HOH A 29 931 70 HOH TIP . 
O 7 HOH A 30 932 72 HOH TIP . 
O 7 HOH A 31 933 73 HOH TIP . 
O 7 HOH A 32 934 75 HOH TIP . 
O 7 HOH A 33 935 76 HOH TIP . 
O 7 HOH A 34 936 78 HOH TIP . 
O 7 HOH A 35 937 79 HOH TIP . 
O 7 HOH A 36 938 80 HOH TIP . 
O 7 HOH A 37 939 84 HOH TIP . 
O 7 HOH A 38 940 85 HOH TIP . 
O 7 HOH A 39 941 86 HOH TIP . 
O 7 HOH A 40 942 88 HOH TIP . 
O 7 HOH A 41 943 89 HOH TIP . 
O 7 HOH A 42 944 90 HOH TIP . 
O 7 HOH A 43 945 94 HOH TIP . 
O 7 HOH A 44 946 96 HOH TIP . 
O 7 HOH A 45 947 98 HOH TIP . 
O 7 HOH A 46 948 99 HOH TIP . 
O 7 HOH A 47 949 100 HOH TIP . 
O 7 HOH A 48 950 106 HOH TIP . 
O 7 HOH A 49 951 107 HOH TIP . 
O 7 HOH A 50 952 109 HOH TIP . 
O 7 HOH A 51 953 112 HOH TIP . 
O 7 HOH A 52 954 113 HOH TIP . 
O 7 HOH A 53 955 114 HOH TIP . 
O 7 HOH A 54 956 115 HOH TIP . 
O 7 HOH A 55 957 116 HOH TIP . 
O 7 HOH A 56 958 120 HOH TIP . 
O 7 HOH A 57 959 122 HOH TIP . 
O 7 HOH A 58 960 126 HOH TIP . 
O 7 HOH A 59 961 127 HOH TIP . 
O 7 HOH A 60 962 130 HOH TIP . 
O 7 HOH A 61 963 132 HOH TIP . 
P 7 HOH B 1 2203 1 HOH TIP . 
P 7 HOH B 2 2204 2 HOH TIP . 
P 7 HOH B 3 2205 6 HOH TIP . 
P 7 HOH B 4 2206 8 HOH TIP . 
P 7 HOH B 5 2207 12 HOH TIP . 
P 7 HOH B 6 2208 13 HOH TIP . 
P 7 HOH B 7 2209 14 HOH TIP . 
P 7 HOH B 8 2210 15 HOH TIP . 
P 7 HOH B 9 2211 16 HOH TIP . 
P 7 HOH B 10 2212 17 HOH TIP . 
P 7 HOH B 11 2213 18 HOH TIP . 
P 7 HOH B 12 2214 19 HOH TIP . 
P 7 HOH B 13 2215 20 HOH TIP . 
P 7 HOH B 14 2216 21 HOH TIP . 
P 7 HOH B 15 2217 22 HOH TIP . 
P 7 HOH B 16 2218 26 HOH TIP . 
P 7 HOH B 17 2219 28 HOH TIP . 
P 7 HOH B 18 2220 29 HOH TIP . 
P 7 HOH B 19 2221 31 HOH TIP . 
P 7 HOH B 20 2222 34 HOH TIP . 
P 7 HOH B 21 2223 35 HOH TIP . 
P 7 HOH B 22 2224 36 HOH TIP . 
P 7 HOH B 23 2225 39 HOH TIP . 
P 7 HOH B 24 2226 42 HOH TIP . 
P 7 HOH B 25 2227 45 HOH TIP . 
P 7 HOH B 26 2228 46 HOH TIP . 
P 7 HOH B 27 2229 47 HOH TIP . 
P 7 HOH B 28 2230 49 HOH TIP . 
P 7 HOH B 29 2231 50 HOH TIP . 
P 7 HOH B 30 2232 51 HOH TIP . 
P 7 HOH B 31 2233 52 HOH TIP . 
P 7 HOH B 32 2234 54 HOH TIP . 
P 7 HOH B 33 2235 58 HOH TIP . 
P 7 HOH B 34 2236 59 HOH TIP . 
P 7 HOH B 35 2237 60 HOH TIP . 
P 7 HOH B 36 2238 61 HOH TIP . 
P 7 HOH B 37 2239 62 HOH TIP . 
P 7 HOH B 38 2240 63 HOH TIP . 
P 7 HOH B 39 2241 66 HOH TIP . 
P 7 HOH B 40 2242 68 HOH TIP . 
P 7 HOH B 41 2243 69 HOH TIP . 
P 7 HOH B 42 2244 71 HOH TIP . 
P 7 HOH B 43 2245 74 HOH TIP . 
P 7 HOH B 44 2246 77 HOH TIP . 
P 7 HOH B 45 2247 81 HOH TIP . 
P 7 HOH B 46 2248 82 HOH TIP . 
P 7 HOH B 47 2249 83 HOH TIP . 
P 7 HOH B 48 2250 87 HOH TIP . 
P 7 HOH B 49 2251 91 HOH TIP . 
P 7 HOH B 50 2252 92 HOH TIP . 
P 7 HOH B 51 2253 93 HOH TIP . 
P 7 HOH B 52 2254 95 HOH TIP . 
P 7 HOH B 53 2255 97 HOH TIP . 
P 7 HOH B 54 2256 101 HOH TIP . 
P 7 HOH B 55 2257 102 HOH TIP . 
P 7 HOH B 56 2258 103 HOH TIP . 
P 7 HOH B 57 2259 104 HOH TIP . 
P 7 HOH B 58 2260 105 HOH TIP . 
P 7 HOH B 59 2261 108 HOH TIP . 
P 7 HOH B 60 2262 110 HOH TIP . 
P 7 HOH B 61 2263 111 HOH TIP . 
P 7 HOH B 62 2264 117 HOH TIP . 
P 7 HOH B 63 2265 118 HOH TIP . 
P 7 HOH B 64 2266 119 HOH TIP . 
P 7 HOH B 65 2267 121 HOH TIP . 
P 7 HOH B 66 2268 123 HOH TIP . 
P 7 HOH B 67 2269 124 HOH TIP . 
P 7 HOH B 68 2270 125 HOH TIP . 
P 7 HOH B 69 2271 128 HOH TIP . 
P 7 HOH B 70 2272 129 HOH TIP . 
P 7 HOH B 71 2273 131 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . J 5 30.299 47.972 11.858 1 76.93 ? P AMP 301 A 1 
HETATM 2 O O1P AMP . . . J 5 30.811 48.063 10.47 1 77.71 ? O1P AMP 301 A 1 
HETATM 3 O O2P AMP . . . J 5 28.854 47.532 11.874 1 76.93 ? O2P AMP 301 A 1 
HETATM 4 O O3P AMP . . . J 5 31.205 46.976 12.648 1 76.94 ? O3P AMP 301 A 1 
HETATM 5 O O5' AMP . . . J 5 30.503 49.421 12.598 1 76.85 ? O5' AMP 301 A 1 
HETATM 6 C C5' AMP . . . J 5 31.028 49.604 13.934 1 75.67 ? C5' AMP 301 A 1 
HETATM 7 C C4' AMP . . . J 5 30.055 50.573 14.647 1 75.32 ? C4' AMP 301 A 1 
HETATM 8 O O4' AMP . . . J 5 29.449 51.511 13.71 1 75.29 ? O4' AMP 301 A 1 
HETATM 9 C C3' AMP . . . J 5 28.894 49.774 15.304 1 75.02 ? C3' AMP 301 A 1 
HETATM 10 O O3' AMP . . . J 5 29.288 49.308 16.626 1 74.41 ? O3' AMP 301 A 1 
HETATM 11 C C2' AMP . . . J 5 27.741 50.792 15.296 1 75.03 ? C2' AMP 301 A 1 
HETATM 12 O O2' AMP . . . J 5 27.687 51.489 16.57 1 74.62 ? O2' AMP 301 A 1 
HETATM 13 C C1' AMP . . . J 5 28.067 51.693 14.1 1 75.26 ? C1' AMP 301 A 1 
HETATM 14 N N9 AMP . . . J 5 27.21 51.402 12.93 1 75.54 ? N9 AMP 301 A 1 
HETATM 15 C C8 AMP . . . J 5 27.343 50.465 11.964 1 75.65 ? C8 AMP 301 A 1 
HETATM 16 N N7 AMP . . . J 5 26.37 50.45 10.99 1 75.45 ? N7 AMP 301 A 1 
HETATM 17 C C5 AMP . . . J 5 25.57 51.468 11.415 1 75.45 ? C5 AMP 301 A 1 
HETATM 18 C C6 AMP . . . J 5 24.395 52.004 10.853 1 75.42 ? C6 AMP 301 A 1 
HETATM 19 N N6 AMP . . . J 5 23.819 51.532 9.747 1 74.5 ? N6 AMP 301 A 1 
HETATM 20 N N1 AMP . . . J 5 23.804 53.052 11.515 1 75.52 ? N1 AMP 301 A 1 
HETATM 21 C C2 AMP . . . J 5 24.374 53.543 12.639 1 75.24 ? C2 AMP 301 A 1 
HETATM 22 N N3 AMP . . . J 5 25.49 53.125 13.26 1 75.55 ? N3 AMP 301 A 1 
HETATM 23 C C4 AMP . . . J 5 26.065 52.078 12.573 1 75.39 ? C4 AMP 301 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           23 
#