data_2F1H # _model_server_result.job_id rnijF-tZv3dZOLxamRbTDg _model_server_result.datetime_utc '2024-11-26 02:39:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 2F1H # _exptl.entry_id 2F1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2F1H _cell.length_a 84.453 _cell.length_b 84.453 _cell.length_c 105.484 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 98 A GLN 98 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc2 A OG1 THR 112 A THR 112 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A OD1 ASP 246 A ASP 246 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc4 A O GLY 279 A GLY 279 5_564 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc5 A O HIS 280 A HIS 280 5_564 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.688 ? metalc ? metalc6 A O HIS 280 A HIS 280 5_564 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc7 A O ALA 282 A ALA 282 5_564 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc8 A OD1 ASP 302 A ASP 302 5_564 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc9 F O1B ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc10 F O1G ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc11 F O2G ANP . A ANP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc12 F O2G ANP . A ANP 401 1_555 D K K . A K 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.53 ? metalc ? metalc13 F O2G ANP . A ANP 401 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2F1H _atom_sites.fract_transf_matrix[1][1] 0.011841 _atom_sites.fract_transf_matrix[1][2] 0.006836 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013673 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 2 MG A 1 502 502 MG MG . D 3 K A 1 503 503 K K . E 3 K A 1 504 504 K K . F 4 ANP A 1 401 401 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 4 28.49 59.587 -9.348 1 24.45 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . F 4 28.892 59.4 -7.997 1 27.22 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . F 4 27.009 59.678 -9.399 1 26.75 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . F 4 29.05 60.808 -9.842 1 26.44 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . F 4 28.632 56.809 -10.118 1 23.81 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . F 4 27.746 56.614 -8.942 1 22.36 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . F 4 29.845 56.037 -9.978 1 22.87 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . F 4 29.016 58.327 -10.311 1 25.05 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . F 4 27.033 54.964 -11.574 1 27.4 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . F 4 27.466 53.996 -10.471 1 27.09 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . F 4 25.595 55.226 -11.443 1 27.6 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . F 4 27.849 56.36 -11.449 1 26.07 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . F 4 27.335 54.301 -13.076 1 29.52 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . F 4 26.877 55.032 -14.343 1 33.84 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . F 4 26.898 54.23 -15.424 1 36.22 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . F 4 26.172 52.98 -15.154 1 36.39 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . F 4 26.022 54.856 -16.568 1 36.71 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . F 4 26.498 56.036 -17.099 1 39.26 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . F 4 25.582 53.635 -17.412 1 37.01 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . F 4 26.581 53.447 -18.569 1 40.54 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . F 4 25.699 52.47 -16.422 1 35.68 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . F 4 24.497 51.892 -16.305 1 34.47 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . F 4 23.499 52.187 -15.373 1 33.49 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . F 4 22.481 51.421 -15.589 1 33.59 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . F 4 22.746 50.613 -16.636 1 32 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . F 4 22.036 49.626 -17.291 1 30.74 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . F 4 20.788 49.305 -16.895 1 30.16 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . F 4 22.626 48.958 -18.38 1 31.58 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . F 4 23.945 49.287 -18.814 1 33.11 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . F 4 24.669 50.255 -18.193 1 33.9 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . F 4 24.014 50.898 -17.092 1 33.19 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #