data_2F29 # _model_server_result.job_id l1EIxYrP2mFzz4CYOnEBKQ _model_server_result.datetime_utc '2024-12-22 06:00:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f29 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":381}' # _entry.id 2F29 # _exptl.entry_id 2F29 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.255 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.14 _cell.angle_gamma 90 _cell.entry_id 2F29 _cell.length_a 157.29 _cell.length_b 73.98 _cell.length_c 77.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F29 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C11 H17 N O8' _chem_comp.formula_weight 291.255 _chem_comp.id DAN _chem_comp.mon_nstd_flag . _chem_comp.name '2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms Neu5Ac2en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DAN sing 83 n n C1 O1A DAN doub 84 n n C1 O1B DAN sing 85 n n C2 C3 DAN doub 86 n n C2 O6 DAN sing 87 n n C3 C4 DAN sing 88 n n C3 H3 DAN sing 89 n n C4 C5 DAN sing 90 n n C4 O4 DAN sing 91 n n C4 H4 DAN sing 92 n n C5 C6 DAN sing 93 n n C5 N5 DAN sing 94 n n C5 H5 DAN sing 95 n n C6 C7 DAN sing 96 n n C6 O6 DAN sing 97 n n C6 H6 DAN sing 98 n n C7 C8 DAN sing 99 n n C7 O7 DAN sing 100 n n C7 H7 DAN sing 101 n n C8 C9 DAN sing 102 n n C8 O8 DAN sing 103 n n C8 H8 DAN sing 104 n n C9 O9 DAN sing 105 n n C9 H91 DAN sing 106 n n C9 H92 DAN sing 107 n n C10 C11 DAN sing 108 n n C10 N5 DAN sing 109 n n C10 O10 DAN doub 110 n n C11 H111 DAN sing 111 n n C11 H112 DAN sing 112 n n C11 H113 DAN sing 113 n n N5 HN5 DAN sing 114 n n O1B HO1B DAN sing 115 n n O4 HO4 DAN sing 116 n n O7 HO7 DAN sing 117 n n O8 HO8 DAN sing 118 n n O9 HO9 DAN sing 119 n n # _atom_sites.entry_id 2F29 _atom_sites.fract_transf_matrix[1][1] 0.006358 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000349 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAN A 1 381 1 DAN DAN . D 3 EPE A 1 382 2 EPE EPE . E 3 EPE A 1 383 3 EPE EPE . F 2 DAN B 1 381 4 DAN DAN . G 3 EPE B 1 382 5 EPE EPE . H 3 EPE B 1 383 6 EPE EPE . I 4 HOH A 1 384 1 HOH HOH . I 4 HOH A 2 385 2 HOH HOH . I 4 HOH A 3 386 3 HOH HOH . I 4 HOH A 4 387 8 HOH HOH . I 4 HOH A 5 388 10 HOH HOH . I 4 HOH A 6 389 11 HOH HOH . I 4 HOH A 7 390 13 HOH HOH . I 4 HOH A 8 391 14 HOH HOH . I 4 HOH A 9 392 15 HOH HOH . I 4 HOH A 10 393 16 HOH HOH . I 4 HOH A 11 394 18 HOH HOH . I 4 HOH A 12 395 23 HOH HOH . I 4 HOH A 13 396 24 HOH HOH . I 4 HOH A 14 397 25 HOH HOH . I 4 HOH A 15 398 26 HOH HOH . I 4 HOH A 16 399 28 HOH HOH . I 4 HOH A 17 400 31 HOH HOH . I 4 HOH A 18 401 32 HOH HOH . I 4 HOH A 19 402 35 HOH HOH . I 4 HOH A 20 403 36 HOH HOH . I 4 HOH A 21 404 37 HOH HOH . I 4 HOH A 22 405 39 HOH HOH . I 4 HOH A 23 406 41 HOH HOH . I 4 HOH A 24 407 45 HOH HOH . I 4 HOH A 25 408 46 HOH HOH . I 4 HOH A 26 409 47 HOH HOH . I 4 HOH A 27 410 48 HOH HOH . I 4 HOH A 28 411 50 HOH HOH . I 4 HOH A 29 412 51 HOH HOH . I 4 HOH A 30 413 53 HOH HOH . I 4 HOH A 31 414 54 HOH HOH . I 4 HOH A 32 415 55 HOH HOH . I 4 HOH A 33 416 57 HOH HOH . I 4 HOH A 34 417 62 HOH HOH . I 4 HOH A 35 418 64 HOH HOH . I 4 HOH A 36 419 71 HOH HOH . I 4 HOH A 37 420 75 HOH HOH . J 4 HOH B 1 384 4 HOH HOH . J 4 HOH B 2 385 5 HOH HOH . J 4 HOH B 3 386 6 HOH HOH . J 4 HOH B 4 387 7 HOH HOH . J 4 HOH B 5 388 9 HOH HOH . J 4 HOH B 6 389 12 HOH HOH . J 4 HOH B 7 390 17 HOH HOH . J 4 HOH B 8 391 19 HOH HOH . J 4 HOH B 9 392 20 HOH HOH . J 4 HOH B 10 393 21 HOH HOH . J 4 HOH B 11 394 22 HOH HOH . J 4 HOH B 12 395 27 HOH HOH . J 4 HOH B 13 396 29 HOH HOH . J 4 HOH B 14 397 30 HOH HOH . J 4 HOH B 15 398 33 HOH HOH . J 4 HOH B 16 399 34 HOH HOH . J 4 HOH B 17 400 38 HOH HOH . J 4 HOH B 18 401 40 HOH HOH . J 4 HOH B 19 402 42 HOH HOH . J 4 HOH B 20 403 43 HOH HOH . J 4 HOH B 21 404 44 HOH HOH . J 4 HOH B 22 405 49 HOH HOH . J 4 HOH B 23 406 52 HOH HOH . J 4 HOH B 24 407 56 HOH HOH . J 4 HOH B 25 408 58 HOH HOH . J 4 HOH B 26 409 59 HOH HOH . J 4 HOH B 27 410 60 HOH HOH . J 4 HOH B 28 411 61 HOH HOH . J 4 HOH B 29 412 63 HOH HOH . J 4 HOH B 30 413 65 HOH HOH . J 4 HOH B 31 414 66 HOH HOH . J 4 HOH B 32 415 67 HOH HOH . J 4 HOH B 33 416 68 HOH HOH . J 4 HOH B 34 417 69 HOH HOH . J 4 HOH B 35 418 70 HOH HOH . J 4 HOH B 36 419 72 HOH HOH . J 4 HOH B 37 420 73 HOH HOH . J 4 HOH B 38 421 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DAN . . . C 2 67.735 -3.035 6.983 1 18.9 ? C1 DAN 381 A 1 HETATM 2 C C2 DAN . . . C 2 67.585 -4.251 7.714 1 17.04 ? C2 DAN 381 A 1 HETATM 3 C C3 DAN . . . C 2 68.56 -4.579 8.804 1 14.13 ? C3 DAN 381 A 1 HETATM 4 C C4 DAN . . . C 2 68.058 -5.732 9.693 1 16.19 ? C4 DAN 381 A 1 HETATM 5 C C5 DAN . . . C 2 67.261 -6.756 8.912 1 16.1 ? C5 DAN 381 A 1 HETATM 6 C C6 DAN . . . C 2 66.07 -6.033 8.246 1 16.94 ? C6 DAN 381 A 1 HETATM 7 C C7 DAN . . . C 2 65.195 -6.985 7.389 1 17.21 ? C7 DAN 381 A 1 HETATM 8 C C8 DAN . . . C 2 63.993 -6.291 6.719 1 17.25 ? C8 DAN 381 A 1 HETATM 9 C C9 DAN . . . C 2 63.133 -7.236 5.855 1 15.84 ? C9 DAN 381 A 1 HETATM 10 C C10 DAN . . . C 2 67.261 -9.061 9.849 1 17.42 ? C10 DAN 381 A 1 HETATM 11 C C11 DAN . . . C 2 66.759 -10.016 10.9 1 15.79 ? C11 DAN 381 A 1 HETATM 12 N N5 DAN . . . C 2 66.851 -7.791 9.871 1 17.86 ? N5 DAN 381 A 1 HETATM 13 O O1A DAN . . . C 2 66.853 -2.664 5.999 1 21.19 ? O1A DAN 381 A 1 HETATM 14 O O1B DAN . . . C 2 68.725 -2.24 7.243 1 17.72 ? O1B DAN 381 A 1 HETATM 15 O O4 DAN . . . C 2 69.199 -6.339 10.314 1 18.21 ? O4 DAN 381 A 1 HETATM 16 O O6 DAN . . . C 2 66.586 -5.007 7.362 1 17.56 ? O6 DAN 381 A 1 HETATM 17 O O7 DAN . . . C 2 65.977 -7.548 6.33 1 18.87 ? O7 DAN 381 A 1 HETATM 18 O O8 DAN . . . C 2 63.146 -5.723 7.716 1 18.65 ? O8 DAN 381 A 1 HETATM 19 O O9 DAN . . . C 2 63.162 -8.583 6.263 1 16.52 ? O9 DAN 381 A 1 HETATM 20 O O10 DAN . . . C 2 68.129 -9.546 8.902 1 20.89 ? O10 DAN 381 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #