data_2F2C # _model_server_result.job_id 7sBv-T22K8z01ADEqogh-Q _model_server_result.datetime_utc '2024-11-25 10:00:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 2F2C # _exptl.entry_id 2F2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.909 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({6-[(3-AMINO-5-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)-3-METHYLBUTAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2F2C _cell.length_a 71.517 _cell.length_b 71.517 _cell.length_c 449.297 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H26 Cl N7 O' _chem_comp.formula_weight 403.909 _chem_comp.id AP9 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({6-[(3-AMINO-5-CHLOROPHENYL)AMINO]-9-ISOPROPYL-9H-PURIN-2-YL}AMINO)-3-METHYLBUTAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AMINOPURVALANOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 AP9 sing 13 n n O1 HO1 AP9 sing 14 n n C15 C12 AP9 sing 15 n n C15 H151 AP9 sing 16 n n C15 H152 AP9 sing 17 n n C12 C13 AP9 sing 18 n n C12 N2 AP9 sing 19 n n C12 H12 AP9 sing 20 n n C13 C14 AP9 sing 21 n n C13 C16 AP9 sing 22 n n C13 H13 AP9 sing 23 n n C14 H141 AP9 sing 24 n n C14 H142 AP9 sing 25 n n C14 H143 AP9 sing 26 n n C16 H161 AP9 sing 27 n n C16 H162 AP9 sing 28 n n C16 H163 AP9 sing 29 n n N2 C2 AP9 sing 30 n n N2 HN2 AP9 sing 31 n n C2 N3 AP9 doub 32 n y C2 N1 AP9 sing 33 n y N3 C4 AP9 sing 34 n y C4 C5 AP9 doub 35 n y C4 N9 AP9 sing 36 n y C5 N7 AP9 sing 37 n y C5 C6 AP9 sing 38 n y N7 C8 AP9 doub 39 n y C8 N9 AP9 sing 40 n y C8 H8 AP9 sing 41 n n N9 C9 AP9 sing 42 n n C9 C10 AP9 sing 43 n n C9 C11 AP9 sing 44 n n C9 H9 AP9 sing 45 n n C10 H101 AP9 sing 46 n n C10 H102 AP9 sing 47 n n C10 H103 AP9 sing 48 n n C11 H111 AP9 sing 49 n n C11 H112 AP9 sing 50 n n C11 H113 AP9 sing 51 n n C6 N1 AP9 doub 52 n y C6 N6 AP9 sing 53 n n N6 C1A AP9 sing 54 n n N6 HN6 AP9 sing 55 n n C1A C2A AP9 sing 56 n y C1A C6A AP9 doub 57 n y C2A C3A AP9 doub 58 n y C2A H2A AP9 sing 59 n n C3A N10 AP9 sing 60 n n C3A C4A AP9 sing 61 n y N10 H11 AP9 sing 62 n n N10 H12A AP9 sing 63 n n C4A C5A AP9 doub 64 n y C4A H4A AP9 sing 65 n n C5A CL1 AP9 sing 66 n n C5A C6A AP9 sing 67 n y C6A H6A AP9 sing 68 n n # _atom_sites.entry_id 2F2C _atom_sites.fract_transf_matrix[1][1] 0.013983 _atom_sites.fract_transf_matrix[1][2] 0.008073 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 402 402 SO4 SO4 . D 4 AP9 B 1 401 401 AP9 AP . E 5 DMS B 1 403 403 DMS DMS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AP9 . . . D 4 27.499 22.774 58.014 1 81.03 ? O1 AP9 401 B 1 HETATM 2 C C15 AP9 . . . D 4 28.438 22.074 58.84 1 80.56 ? C15 AP9 401 B 1 HETATM 3 C C12 AP9 . . . D 4 29.823 22.126 58.186 1 80.41 ? C12 AP9 401 B 1 HETATM 4 C C13 AP9 . . . D 4 30.419 20.761 57.85 1 79.66 ? C13 AP9 401 B 1 HETATM 5 C C14 AP9 . . . D 4 31.892 20.905 57.482 1 78.72 ? C14 AP9 401 B 1 HETATM 6 C C16 AP9 . . . D 4 29.65 20.082 56.72 1 79.74 ? C16 AP9 401 B 1 HETATM 7 N N2 AP9 . . . D 4 30.774 22.902 58.976 1 81.13 ? N2 AP9 401 B 1 HETATM 8 C C2 AP9 . . . D 4 30.978 22.865 60.321 1 81.17 ? C2 AP9 401 B 1 HETATM 9 N N3 AP9 . . . D 4 31.858 23.789 60.788 1 81.02 ? N3 AP9 401 B 1 HETATM 10 C C4 AP9 . . . D 4 32.181 23.896 62.098 1 80.95 ? C4 AP9 401 B 1 HETATM 11 C C5 AP9 . . . D 4 31.544 22.963 63.039 1 81.25 ? C5 AP9 401 B 1 HETATM 12 N N7 AP9 . . . D 4 32.029 23.278 64.254 1 81.52 ? N7 AP9 401 B 1 HETATM 13 C C8 AP9 . . . D 4 32.893 24.314 64.105 1 80.86 ? C8 AP9 401 B 1 HETATM 14 N N9 AP9 . . . D 4 32.995 24.691 62.817 1 80.93 ? N9 AP9 401 B 1 HETATM 15 C C9 AP9 . . . D 4 33.867 25.813 62.334 1 80.54 ? C9 AP9 401 B 1 HETATM 16 C C10 AP9 . . . D 4 33.353 27.099 62.977 1 80.23 ? C10 AP9 401 B 1 HETATM 17 C C11 AP9 . . . D 4 33.796 26.027 60.819 1 79.43 ? C11 AP9 401 B 1 HETATM 18 C C6 AP9 . . . D 4 30.592 21.948 62.495 1 81.3 ? C6 AP9 401 B 1 HETATM 19 N N1 AP9 . . . D 4 30.358 21.966 61.151 1 81.28 ? N1 AP9 401 B 1 HETATM 20 N N6 AP9 . . . D 4 29.98 21.091 63.356 1 80.3 ? N6 AP9 401 B 1 HETATM 21 C C1A AP9 . . . D 4 29.603 19.81 63.153 1 79.86 ? C1A AP9 401 B 1 HETATM 22 C C2A AP9 . . . D 4 30.182 18.813 63.945 1 80.4 ? C2A AP9 401 B 1 HETATM 23 C C3A AP9 . . . D 4 29.809 17.475 63.806 1 79.95 ? C3A AP9 401 B 1 HETATM 24 N N10 AP9 . . . D 4 30.392 16.526 64.573 1 79.87 ? N10 AP9 401 B 1 HETATM 25 C C4A AP9 . . . D 4 28.835 17.125 62.875 1 79.92 ? C4A AP9 401 B 1 HETATM 26 C C5A AP9 . . . D 4 28.244 18.119 62.091 1 80.15 ? C5A AP9 401 B 1 HETATM 27 CL CL1 AP9 . . . D 4 27.203 17.723 61.085 1 80.11 ? CL1 AP9 401 B 1 HETATM 28 C C6A AP9 . . . D 4 28.615 19.464 62.229 1 79.75 ? C6A AP9 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #