data_2F38 # _model_server_result.job_id jLuSWeju54up5AVyKxEwXA _model_server_result.datetime_utc '2024-12-27 03:52:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":324}' # _entry.id 2F38 # _exptl.entry_id 2F38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.2 _cell.angle_gamma 90 _cell.entry_id 2F38 _cell.length_a 44.27 _cell.length_b 78.16 _cell.length_c 48.89 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 305 n n PA O2A NAP sing 306 n n PA O5B NAP sing 307 n n PA O3 NAP sing 308 n n O2A HOA2 NAP sing 309 n n O5B C5B NAP sing 310 n n C5B C4B NAP sing 311 n n C5B H51A NAP sing 312 n n C5B H52A NAP sing 313 n n C4B O4B NAP sing 314 n n C4B C3B NAP sing 315 n n C4B H4B NAP sing 316 n n O4B C1B NAP sing 317 n n C3B O3B NAP sing 318 n n C3B C2B NAP sing 319 n n C3B H3B NAP sing 320 n n O3B HO3A NAP sing 321 n n C2B O2B NAP sing 322 n n C2B C1B NAP sing 323 n n C2B H2B NAP sing 324 n n O2B P2B NAP sing 325 n n C1B N9A NAP sing 326 n n C1B H1B NAP sing 327 n n N9A C8A NAP sing 328 n y N9A C4A NAP sing 329 n y C8A N7A NAP doub 330 n y C8A H8A NAP sing 331 n n N7A C5A NAP sing 332 n y C5A C6A NAP sing 333 n y C5A C4A NAP doub 334 n y C6A N6A NAP sing 335 n n C6A N1A NAP doub 336 n y N6A H61A NAP sing 337 n n N6A H62A NAP sing 338 n n N1A C2A NAP sing 339 n y C2A N3A NAP doub 340 n y C2A H2A NAP sing 341 n n N3A C4A NAP sing 342 n y O3 PN NAP sing 343 n n PN O1N NAP doub 344 n n PN O2N NAP sing 345 n n PN O5D NAP sing 346 n n O5D C5D NAP sing 347 n n C5D C4D NAP sing 348 n n C5D H51N NAP sing 349 n n C5D H52N NAP sing 350 n n C4D O4D NAP sing 351 n n C4D C3D NAP sing 352 n n C4D H4D NAP sing 353 n n O4D C1D NAP sing 354 n n C3D O3D NAP sing 355 n n C3D C2D NAP sing 356 n n C3D H3D NAP sing 357 n n O3D HO3N NAP sing 358 n n C2D O2D NAP sing 359 n n C2D C1D NAP sing 360 n n C2D H2D NAP sing 361 n n O2D HO2N NAP sing 362 n n C1D N1N NAP sing 363 n n C1D H1D NAP sing 364 n n N1N C2N NAP sing 365 n y N1N C6N NAP doub 366 n y C2N C3N NAP doub 367 n y C2N H2N NAP sing 368 n n C3N C7N NAP sing 369 n n C3N C4N NAP sing 370 n y C7N O7N NAP doub 371 n n C7N N7N NAP sing 372 n n N7N H71N NAP sing 373 n n N7N H72N NAP sing 374 n n C4N C5N NAP doub 375 n y C4N H4N NAP sing 376 n n C5N C6N NAP sing 377 n y C5N H5N NAP sing 378 n n C6N H6N NAP sing 379 n n P2B O1X NAP doub 380 n n P2B O2X NAP sing 381 n n P2B O3X NAP sing 382 n n O2X HOP2 NAP sing 383 n n O3X HOP3 NAP sing 384 n n # _atom_sites.entry_id 2F38 _atom_sites.fract_transf_matrix[1][1] 0.022589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004064 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 324 324 NAP NAP . C 3 15M A 1 325 325 15M BMP . D 4 HOH A 1 1001 1001 HOH H2O . D 4 HOH A 2 1002 1002 HOH H2O . D 4 HOH A 3 1003 1003 HOH H2O . D 4 HOH A 4 1004 1004 HOH H2O . D 4 HOH A 5 1005 1005 HOH H2O . D 4 HOH A 6 1006 1006 HOH H2O . D 4 HOH A 7 1007 1007 HOH H2O . D 4 HOH A 8 1008 1008 HOH H2O . D 4 HOH A 9 1009 1009 HOH H2O . D 4 HOH A 10 1010 1010 HOH H2O . D 4 HOH A 11 1011 1011 HOH H2O . D 4 HOH A 12 1012 1012 HOH H2O . D 4 HOH A 13 1013 1013 HOH H2O . D 4 HOH A 14 1014 1014 HOH H2O . D 4 HOH A 15 1015 1015 HOH H2O . D 4 HOH A 16 1016 1016 HOH H2O . D 4 HOH A 17 1017 1017 HOH H2O . D 4 HOH A 18 1018 1018 HOH H2O . D 4 HOH A 19 1019 1019 HOH H2O . D 4 HOH A 20 1020 1020 HOH H2O . D 4 HOH A 21 1021 1021 HOH H2O . D 4 HOH A 22 1022 1022 HOH H2O . D 4 HOH A 23 1023 1023 HOH H2O . D 4 HOH A 24 1024 1024 HOH H2O . D 4 HOH A 25 1025 1025 HOH H2O . D 4 HOH A 26 1026 1026 HOH H2O . D 4 HOH A 27 1027 1027 HOH H2O . D 4 HOH A 28 1028 1028 HOH H2O . D 4 HOH A 29 1029 1029 HOH H2O . D 4 HOH A 30 1030 1030 HOH H2O . D 4 HOH A 31 1031 1031 HOH H2O . D 4 HOH A 32 1032 1032 HOH H2O . D 4 HOH A 33 1033 1033 HOH H2O . D 4 HOH A 34 1034 1034 HOH H2O . D 4 HOH A 35 1035 1035 HOH H2O . D 4 HOH A 36 1036 1036 HOH H2O . D 4 HOH A 37 1037 1037 HOH H2O . D 4 HOH A 38 1038 1038 HOH H2O . D 4 HOH A 39 1039 1039 HOH H2O . D 4 HOH A 40 1040 1040 HOH H2O . D 4 HOH A 41 1041 1041 HOH H2O . D 4 HOH A 42 1042 1042 HOH H2O . D 4 HOH A 43 1043 1043 HOH H2O . D 4 HOH A 44 1044 1044 HOH H2O . D 4 HOH A 45 1045 1045 HOH H2O . D 4 HOH A 46 1046 1046 HOH H2O . D 4 HOH A 47 1047 1047 HOH H2O . D 4 HOH A 48 1048 1048 HOH H2O . D 4 HOH A 49 1049 1049 HOH H2O . D 4 HOH A 50 1050 1050 HOH H2O . D 4 HOH A 51 1051 1051 HOH H2O . D 4 HOH A 52 1052 1052 HOH H2O . D 4 HOH A 53 1053 1053 HOH H2O . D 4 HOH A 54 1054 1054 HOH H2O . D 4 HOH A 55 1055 1055 HOH H2O . D 4 HOH A 56 1056 1056 HOH H2O . D 4 HOH A 57 1057 1057 HOH H2O . D 4 HOH A 58 1058 1058 HOH H2O . D 4 HOH A 59 1059 1059 HOH H2O . D 4 HOH A 60 1060 1060 HOH H2O . D 4 HOH A 61 1061 1061 HOH H2O . D 4 HOH A 62 1062 1062 HOH H2O . D 4 HOH A 63 1063 1063 HOH H2O . D 4 HOH A 64 1064 1064 HOH H2O . D 4 HOH A 65 1065 1065 HOH H2O . D 4 HOH A 66 1066 1066 HOH H2O . D 4 HOH A 67 1067 1067 HOH H2O . D 4 HOH A 68 1068 1068 HOH H2O . D 4 HOH A 69 1069 1069 HOH H2O . D 4 HOH A 70 1070 1070 HOH H2O . D 4 HOH A 71 1071 1071 HOH H2O . D 4 HOH A 72 1072 1072 HOH H2O . D 4 HOH A 73 1073 1073 HOH H2O . D 4 HOH A 74 1074 1074 HOH H2O . D 4 HOH A 75 1075 1075 HOH H2O . D 4 HOH A 76 1076 1076 HOH H2O . D 4 HOH A 77 1077 1077 HOH H2O . D 4 HOH A 78 1078 1078 HOH H2O . D 4 HOH A 79 1079 1079 HOH H2O . D 4 HOH A 80 1080 1080 HOH H2O . D 4 HOH A 81 1081 1081 HOH H2O . D 4 HOH A 82 1082 1082 HOH H2O . D 4 HOH A 83 1083 1083 HOH H2O . D 4 HOH A 84 1084 1084 HOH H2O . D 4 HOH A 85 1085 1085 HOH H2O . D 4 HOH A 86 1086 1086 HOH H2O . D 4 HOH A 87 1087 1087 HOH H2O . D 4 HOH A 88 1088 1088 HOH H2O . D 4 HOH A 89 1089 1089 HOH H2O . D 4 HOH A 90 1090 1090 HOH H2O . D 4 HOH A 91 1091 1091 HOH H2O . D 4 HOH A 92 1092 1092 HOH H2O . D 4 HOH A 93 1093 1093 HOH H2O . D 4 HOH A 94 1094 1094 HOH H2O . D 4 HOH A 95 1095 1095 HOH H2O . D 4 HOH A 96 1096 1096 HOH H2O . D 4 HOH A 97 1097 1097 HOH H2O . D 4 HOH A 98 1098 1098 HOH H2O . D 4 HOH A 99 1099 1099 HOH H2O . D 4 HOH A 100 1100 1100 HOH H2O . D 4 HOH A 101 1101 1101 HOH H2O . D 4 HOH A 102 1102 1102 HOH H2O . D 4 HOH A 103 1103 1103 HOH H2O . D 4 HOH A 104 1104 1104 HOH H2O . D 4 HOH A 105 1105 1105 HOH H2O . D 4 HOH A 106 1106 1106 HOH H2O . D 4 HOH A 107 1107 1107 HOH H2O . D 4 HOH A 108 1108 1108 HOH H2O . D 4 HOH A 109 1109 1109 HOH H2O . D 4 HOH A 110 1110 1110 HOH H2O . D 4 HOH A 111 1111 1111 HOH H2O . D 4 HOH A 112 1112 1112 HOH H2O . D 4 HOH A 113 1113 1113 HOH H2O . D 4 HOH A 114 1114 1114 HOH H2O . D 4 HOH A 115 1115 1115 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 22.012 -12.635 51.791 1 9.31 ? PA NAP 324 A 1 HETATM 2 O O1A NAP . . . B 2 22.955 -13.609 51.414 1 4.31 ? O1A NAP 324 A 1 HETATM 3 O O2A NAP . . . B 2 22.281 -11.378 52.578 1 3.12 ? O2A NAP 324 A 1 HETATM 4 O O5B NAP . . . B 2 20.834 -13.352 52.513 1 4.47 ? O5B NAP 324 A 1 HETATM 5 C C5B NAP . . . B 2 20.999 -13.812 53.816 1 9.16 ? C5B NAP 324 A 1 HETATM 6 C C4B NAP . . . B 2 19.72 -14.661 53.977 1 5.58 ? C4B NAP 324 A 1 HETATM 7 O O4B NAP . . . B 2 19.912 -15.113 55.358 1 5.28 ? O4B NAP 324 A 1 HETATM 8 C C3B NAP . . . B 2 18.411 -13.819 53.988 1 5.34 ? C3B NAP 324 A 1 HETATM 9 O O3B NAP . . . B 2 17.517 -14.434 53.057 1 2.5 ? O3B NAP 324 A 1 HETATM 10 C C2B NAP . . . B 2 17.882 -13.856 55.403 1 4.98 ? C2B NAP 324 A 1 HETATM 11 O O2B NAP . . . B 2 16.593 -14.419 55.581 1 4.6 ? O2B NAP 324 A 1 HETATM 12 C C1B NAP . . . B 2 18.916 -14.662 56.238 1 6.49 ? C1B NAP 324 A 1 HETATM 13 N N9A NAP . . . B 2 19.481 -13.833 57.287 1 3.81 ? N9A NAP 324 A 1 HETATM 14 C C8A NAP . . . B 2 19.736 -12.481 57.377 1 3.6 ? C8A NAP 324 A 1 HETATM 15 N N7A NAP . . . B 2 20.272 -12.11 58.523 1 5.07 ? N7A NAP 324 A 1 HETATM 16 C C5A NAP . . . B 2 20.37 -13.305 59.218 1 2 ? C5A NAP 324 A 1 HETATM 17 C C6A NAP . . . B 2 20.862 -13.57 60.509 1 2.57 ? C6A NAP 324 A 1 HETATM 18 N N6A NAP . . . B 2 21.367 -12.687 61.39 1 3.85 ? N6A NAP 324 A 1 HETATM 19 N N1A NAP . . . B 2 20.825 -14.904 60.941 1 3.83 ? N1A NAP 324 A 1 HETATM 20 C C2A NAP . . . B 2 20.318 -15.927 60.115 1 4.47 ? C2A NAP 324 A 1 HETATM 21 N N3A NAP . . . B 2 19.829 -15.691 58.842 1 2.3 ? N3A NAP 324 A 1 HETATM 22 C C4A NAP . . . B 2 19.876 -14.365 58.444 1 3.14 ? C4A NAP 324 A 1 HETATM 23 O O3 NAP . . . B 2 21.13 -12.161 50.569 1 5.37 ? O3 NAP 324 A 1 HETATM 24 P PN NAP . . . B 2 21.298 -11.928 49.024 1 6.83 ? PN NAP 324 A 1 HETATM 25 O O1N NAP . . . B 2 20.003 -11.459 48.502 1 5.48 ? O1N NAP 324 A 1 HETATM 26 O O2N NAP . . . B 2 21.836 -13.188 48.438 1 5.26 ? O2N NAP 324 A 1 HETATM 27 O O5D NAP . . . B 2 22.32 -10.722 48.941 1 5 ? O5D NAP 324 A 1 HETATM 28 C C5D NAP . . . B 2 22.118 -9.584 49.808 1 2.48 ? C5D NAP 324 A 1 HETATM 29 C C4D NAP . . . B 2 21.756 -8.368 49.006 1 3.33 ? C4D NAP 324 A 1 HETATM 30 O O4D NAP . . . B 2 22.752 -7.977 48.017 1 4.94 ? O4D NAP 324 A 1 HETATM 31 C C3D NAP . . . B 2 20.391 -8.36 48.221 1 2.84 ? C3D NAP 324 A 1 HETATM 32 O O3D NAP . . . B 2 19.267 -8.024 49.03 1 2 ? O3D NAP 324 A 1 HETATM 33 C C2D NAP . . . B 2 20.644 -7.384 47.105 1 4.01 ? C2D NAP 324 A 1 HETATM 34 O O2D NAP . . . B 2 20.396 -6.061 47.528 1 2 ? O2D NAP 324 A 1 HETATM 35 C C1D NAP . . . B 2 22.087 -7.572 46.771 1 2.67 ? C1D NAP 324 A 1 HETATM 36 N N1N NAP . . . B 2 22.419 -8.536 45.648 1 2 ? N1N NAP 324 A 1 HETATM 37 C C2N NAP . . . B 2 23.079 -8.075 44.485 1 2 ? C2N NAP 324 A 1 HETATM 38 C C3N NAP . . . B 2 23.345 -8.975 43.454 1 2 ? C3N NAP 324 A 1 HETATM 39 C C7N NAP . . . B 2 24.05 -8.461 42.195 1 3.38 ? C7N NAP 324 A 1 HETATM 40 O O7N NAP . . . B 2 24.236 -9.271 41.301 1 2 ? O7N NAP 324 A 1 HETATM 41 N N7N NAP . . . B 2 24.414 -7.203 42.096 1 2 ? N7N NAP 324 A 1 HETATM 42 C C4N NAP . . . B 2 22.95 -10.39 43.547 1 3.16 ? C4N NAP 324 A 1 HETATM 43 C C5N NAP . . . B 2 22.295 -10.821 44.73 1 2 ? C5N NAP 324 A 1 HETATM 44 C C6N NAP . . . B 2 22.015 -9.917 45.795 1 4.96 ? C6N NAP 324 A 1 HETATM 45 P P2B NAP . . . B 2 15.419 -13.636 56.388 1 6.16 ? P2B NAP 324 A 1 HETATM 46 O O1X NAP . . . B 2 14.912 -12.568 55.425 1 2 ? O1X NAP 324 A 1 HETATM 47 O O2X NAP . . . B 2 14.457 -14.732 56.634 1 2 ? O2X NAP 324 A 1 HETATM 48 O O3X NAP . . . B 2 16.067 -13.017 57.619 1 4.15 ? O3X NAP 324 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #