data_2F3X
#
_model_server_result.job_id            tjE3g0eUkrBDGyjK5Sekjg 
_model_server_result.datetime_utc      '2024-11-25 01:55:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":390}' 
#
_entry.id    2F3X 
#
_exptl.entry_id    2F3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              853.58 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONYL-COENZYME A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2F3X 
_cell.length_a            89.441 
_cell.length_b            89.441 
_cell.length_c            162.166 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H38 N7 O19 P3 S' 
_chem_comp.formula_weight    853.58 
_chem_comp.id                MLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 N9 MLC sing 224 n y 
C8 N7 MLC doub 225 n y 
C8 H8 MLC sing 226 n n 
N9 C4 MLC sing 227 n y 
N9 C1' MLC sing 228 n n 
C4 C5 MLC sing 229 n y 
C4 N3 MLC doub 230 n y 
C5 N7 MLC sing 231 n y 
C5 C6 MLC doub 232 n y 
N3 C2 MLC sing 233 n y 
C2 N1 MLC doub 234 n y 
C2 H2 MLC sing 235 n n 
N1 C6 MLC sing 236 n y 
C6 N6 MLC sing 237 n n 
N6 HN61 MLC sing 238 n n 
N6 HN62 MLC sing 239 n n 
C1' C2' MLC sing 240 n n 
C1' O4' MLC sing 241 n n 
C1' H1' MLC sing 242 n n 
C2' O2' MLC sing 243 n n 
C2' C3' MLC sing 244 n n 
C2' H2' MLC sing 245 n n 
O2' HO2 MLC sing 246 n n 
C3' O3' MLC sing 247 n n 
C3' C4' MLC sing 248 n n 
C3' H3' MLC sing 249 n n 
O3' P3 MLC sing 250 n n 
C4' O4' MLC sing 251 n n 
C4' C5' MLC sing 252 n n 
C4' H4' MLC sing 253 n n 
C5' O5' MLC sing 254 n n 
C5' "H5'1" MLC sing 255 n n 
C5' "H5'2" MLC sing 256 n n 
O5' P1 MLC sing 257 n n 
P1 O11 MLC doub 258 n n 
P1 O12 MLC sing 259 n n 
P1 O6 MLC sing 260 n n 
O12 H12 MLC sing 261 n n 
O6 P2 MLC sing 262 n n 
P2 O21 MLC doub 263 n n 
P2 O22 MLC sing 264 n n 
P2 O7 MLC sing 265 n n 
O22 H22 MLC sing 266 n n 
O7 CPB MLC sing 267 n n 
CPB CPA MLC sing 268 n n 
CPB HPB1 MLC sing 269 n n 
CPB HPB2 MLC sing 270 n n 
CPA CP7 MLC sing 271 n n 
CPA CP9 MLC sing 272 n n 
CPA CP8 MLC sing 273 n n 
CP7 OP3 MLC sing 274 n n 
CP7 CP6 MLC sing 275 n n 
CP7 HP7 MLC sing 276 n n 
CP9 HP91 MLC sing 277 n n 
CP9 HP92 MLC sing 278 n n 
CP9 HP93 MLC sing 279 n n 
CP8 HP81 MLC sing 280 n n 
CP8 HP82 MLC sing 281 n n 
CP8 HP83 MLC sing 282 n n 
OP3 HP3 MLC sing 283 n n 
CP6 OP2 MLC doub 284 n n 
CP6 NP2 MLC sing 285 n n 
NP2 CP5 MLC sing 286 n n 
NP2 HP2 MLC sing 287 n n 
CP5 CP4 MLC sing 288 n n 
CP5 HP51 MLC sing 289 n n 
CP5 HP52 MLC sing 290 n n 
CP4 CP3 MLC sing 291 n n 
CP4 HP41 MLC sing 292 n n 
CP4 HP42 MLC sing 293 n n 
CP3 OP1 MLC doub 294 n n 
CP3 NP1 MLC sing 295 n n 
NP1 CP2 MLC sing 296 n n 
NP1 HP1 MLC sing 297 n n 
CP2 CP1 MLC sing 298 n n 
CP2 HP21 MLC sing 299 n n 
CP2 HP22 MLC sing 300 n n 
CP1 S MLC sing 301 n n 
CP1 HP11 MLC sing 302 n n 
CP1 HP12 MLC sing 303 n n 
S CM1 MLC sing 304 n n 
P3 O31 MLC sing 305 n n 
P3 O32 MLC sing 306 n n 
P3 O33 MLC doub 307 n n 
O31 H31 MLC sing 308 n n 
O32 H32 MLC sing 309 n n 
CM1 CM2 MLC sing 310 n n 
CM1 OM2 MLC doub 311 n n 
CM2 CM3 MLC sing 312 n n 
CM2 HM21 MLC sing 313 n n 
CM2 HM22 MLC sing 314 n n 
CM3 OM3 MLC sing 315 n n 
CM3 OM4 MLC doub 316 n n 
OM3 HO3 MLC sing 317 n n 
#
_atom_sites.entry_id                     2F3X 
_atom_sites.fract_transf_matrix[1][1]    0.011181 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006167 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLC A 1 391 391 MLC MLC . 
D 2 MLC B 1 390 390 MLC MLC . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 4 4 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 6 6 HOH HOH . 
E 3 HOH A 6 7 7 HOH HOH . 
E 3 HOH A 7 9 9 HOH HOH . 
E 3 HOH A 8 10 10 HOH HOH . 
F 3 HOH B 1 2 2 HOH HOH . 
F 3 HOH B 2 8 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' MLC . . . D 2 -24.003 -33.497 66.552 1 86.35 ? O5' MLC 390 B 1 
HETATM 2 P P1 MLC . . . D 2 -25.25 -33.207 65.549 1 87.97 ? P1 MLC 390 B 1 
HETATM 3 O O11 MLC . . . D 2 -25.636 -31.725 65.699 1 87 ? O11 MLC 390 B 1 
HETATM 4 O O12 MLC . . . D 2 -26.321 -34.309 65.727 1 85.67 ? O12 MLC 390 B 1 
HETATM 5 O O6 MLC . . . D 2 -24.526 -33.312 64.087 1 84.59 ? O6 MLC 390 B 1 
HETATM 6 P P2 MLC . . . D 2 -23.034 -32.702 63.885 1 82.75 ? P2 MLC 390 B 1 
HETATM 7 O O21 MLC . . . D 2 -22.949 -31.32 64.515 1 81.48 ? O21 MLC 390 B 1 
HETATM 8 O O22 MLC . . . D 2 -22.427 -32.924 62.48 1 78.63 ? O22 MLC 390 B 1 
HETATM 9 O O7 MLC . . . D 2 -22.505 -33.752 65.007 1 78.05 ? O7 MLC 390 B 1 
HETATM 10 C CPB MLC . . . D 2 -21.357 -34.534 64.738 1 73.5 ? CPB MLC 390 B 1 
HETATM 11 C CPA MLC . . . D 2 -20.244 -34.105 65.667 1 69.11 ? CPA MLC 390 B 1 
HETATM 12 C CP7 MLC . . . D 2 -19.992 -35.344 66.406 1 64.58 ? CP7 MLC 390 B 1 
HETATM 13 C CP9 MLC . . . D 2 -20.68 -33.061 66.713 1 70.28 ? CP9 MLC 390 B 1 
HETATM 14 C CP8 MLC . . . D 2 -19.017 -33.656 64.871 1 69.06 ? CP8 MLC 390 B 1 
HETATM 15 O OP3 MLC . . . D 2 -21.313 -35.839 66.713 1 59.71 ? OP3 MLC 390 B 1 
HETATM 16 C CP6 MLC . . . D 2 -19.027 -36.178 65.59 1 62.66 ? CP6 MLC 390 B 1 
HETATM 17 O OP2 MLC . . . D 2 -19.265 -36.844 64.597 1 61.12 ? OP2 MLC 390 B 1 
HETATM 18 N NP2 MLC . . . D 2 -17.829 -36.011 66.115 1 61.41 ? NP2 MLC 390 B 1 
HETATM 19 C CP5 MLC . . . D 2 -16.514 -36.583 65.965 1 60.3 ? CP5 MLC 390 B 1 
HETATM 20 C CP4 MLC . . . D 2 -16.51 -37.154 67.404 1 58.97 ? CP4 MLC 390 B 1 
HETATM 21 C CP3 MLC . . . D 2 -15.255 -37.85 67.796 1 58.94 ? CP3 MLC 390 B 1 
HETATM 22 O OP1 MLC . . . D 2 -14.741 -38.649 67.06 1 60.64 ? OP1 MLC 390 B 1 
HETATM 23 N NP1 MLC . . . D 2 -14.741 -37.579 68.975 1 61.32 ? NP1 MLC 390 B 1 
HETATM 24 C CP2 MLC . . . D 2 -13.491 -38.12 69.525 1 62.6 ? CP2 MLC 390 B 1 
HETATM 25 C CP1 MLC . . . D 2 -13.581 -39.637 69.601 1 62.36 ? CP1 MLC 390 B 1 
HETATM 26 S S MLC . . . D 2 -14.503 -39.992 71.094 1 64.52 ? S MLC 390 B 1 
HETATM 27 C CM1 MLC . . . D 2 -13.484 -39.463 72.395 1 64.97 ? CM1 MLC 390 B 1 
HETATM 28 C CM2 MLC . . . D 2 -12.265 -40.247 72.613 1 67.36 ? CM2 MLC 390 B 1 
HETATM 29 C CM3 MLC . . . D 2 -12.256 -40.901 73.928 1 67.49 ? CM3 MLC 390 B 1 
HETATM 30 O OM2 MLC . . . D 2 -13.688 -38.498 73.067 1 65.41 ? OM2 MLC 390 B 1 
HETATM 31 O OM3 MLC . . . D 2 -13.335 -40.959 74.536 1 66.82 ? OM3 MLC 390 B 1 
HETATM 32 O OM4 MLC . . . D 2 -11.13 -41.281 74.304 1 68.63 ? OM4 MLC 390 B 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#