data_2F3X # _model_server_result.job_id AtnYSNMeoo_gcemtlAyPhQ _model_server_result.datetime_utc '2024-10-10 02:25:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":391}' # _entry.id 2F3X # _exptl.entry_id 2F3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 853.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F3X _cell.length_a 89.441 _cell.length_b 89.441 _cell.length_c 162.166 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 224 n y C8 N7 MLC doub 225 n y C8 H8 MLC sing 226 n n N9 C4 MLC sing 227 n y N9 C1' MLC sing 228 n n C4 C5 MLC sing 229 n y C4 N3 MLC doub 230 n y C5 N7 MLC sing 231 n y C5 C6 MLC doub 232 n y N3 C2 MLC sing 233 n y C2 N1 MLC doub 234 n y C2 H2 MLC sing 235 n n N1 C6 MLC sing 236 n y C6 N6 MLC sing 237 n n N6 HN61 MLC sing 238 n n N6 HN62 MLC sing 239 n n C1' C2' MLC sing 240 n n C1' O4' MLC sing 241 n n C1' H1' MLC sing 242 n n C2' O2' MLC sing 243 n n C2' C3' MLC sing 244 n n C2' H2' MLC sing 245 n n O2' HO2 MLC sing 246 n n C3' O3' MLC sing 247 n n C3' C4' MLC sing 248 n n C3' H3' MLC sing 249 n n O3' P3 MLC sing 250 n n C4' O4' MLC sing 251 n n C4' C5' MLC sing 252 n n C4' H4' MLC sing 253 n n C5' O5' MLC sing 254 n n C5' "H5'1" MLC sing 255 n n C5' "H5'2" MLC sing 256 n n O5' P1 MLC sing 257 n n P1 O11 MLC doub 258 n n P1 O12 MLC sing 259 n n P1 O6 MLC sing 260 n n O12 H12 MLC sing 261 n n O6 P2 MLC sing 262 n n P2 O21 MLC doub 263 n n P2 O22 MLC sing 264 n n P2 O7 MLC sing 265 n n O22 H22 MLC sing 266 n n O7 CPB MLC sing 267 n n CPB CPA MLC sing 268 n n CPB HPB1 MLC sing 269 n n CPB HPB2 MLC sing 270 n n CPA CP7 MLC sing 271 n n CPA CP9 MLC sing 272 n n CPA CP8 MLC sing 273 n n CP7 OP3 MLC sing 274 n n CP7 CP6 MLC sing 275 n n CP7 HP7 MLC sing 276 n n CP9 HP91 MLC sing 277 n n CP9 HP92 MLC sing 278 n n CP9 HP93 MLC sing 279 n n CP8 HP81 MLC sing 280 n n CP8 HP82 MLC sing 281 n n CP8 HP83 MLC sing 282 n n OP3 HP3 MLC sing 283 n n CP6 OP2 MLC doub 284 n n CP6 NP2 MLC sing 285 n n NP2 CP5 MLC sing 286 n n NP2 HP2 MLC sing 287 n n CP5 CP4 MLC sing 288 n n CP5 HP51 MLC sing 289 n n CP5 HP52 MLC sing 290 n n CP4 CP3 MLC sing 291 n n CP4 HP41 MLC sing 292 n n CP4 HP42 MLC sing 293 n n CP3 OP1 MLC doub 294 n n CP3 NP1 MLC sing 295 n n NP1 CP2 MLC sing 296 n n NP1 HP1 MLC sing 297 n n CP2 CP1 MLC sing 298 n n CP2 HP21 MLC sing 299 n n CP2 HP22 MLC sing 300 n n CP1 S MLC sing 301 n n CP1 HP11 MLC sing 302 n n CP1 HP12 MLC sing 303 n n S CM1 MLC sing 304 n n P3 O31 MLC sing 305 n n P3 O32 MLC sing 306 n n P3 O33 MLC doub 307 n n O31 H31 MLC sing 308 n n O32 H32 MLC sing 309 n n CM1 CM2 MLC sing 310 n n CM1 OM2 MLC doub 311 n n CM2 CM3 MLC sing 312 n n CM2 HM21 MLC sing 313 n n CM2 HM22 MLC sing 314 n n CM3 OM3 MLC sing 315 n n CM3 OM4 MLC doub 316 n n OM3 HO3 MLC sing 317 n n # _atom_sites.entry_id 2F3X _atom_sites.fract_transf_matrix[1][1] 0.011181 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLC A 1 391 391 MLC MLC . D 2 MLC B 1 390 390 MLC MLC . E 3 HOH A 1 1 1 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 4 4 HOH HOH . E 3 HOH A 4 5 5 HOH HOH . E 3 HOH A 5 6 6 HOH HOH . E 3 HOH A 6 7 7 HOH HOH . E 3 HOH A 7 9 9 HOH HOH . E 3 HOH A 8 10 10 HOH HOH . F 3 HOH B 1 2 2 HOH HOH . F 3 HOH B 2 8 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' MLC . . . C 2 3.696 -19.599 86.832 1 102.05 ? O5' MLC 391 A 1 HETATM 2 P P1 MLC . . . C 2 2.9 -18.806 85.639 1 103.17 ? P1 MLC 391 A 1 HETATM 3 O O11 MLC . . . C 2 3.007 -19.492 84.289 1 102.22 ? O11 MLC 391 A 1 HETATM 4 O O12 MLC . . . C 2 3.119 -17.291 85.554 1 104.17 ? O12 MLC 391 A 1 HETATM 5 O O6 MLC . . . C 2 1.451 -19.039 86.269 1 100.02 ? O6 MLC 391 A 1 HETATM 6 P P2 MLC . . . C 2 0.361 -18.715 85.161 1 99.12 ? P2 MLC 391 A 1 HETATM 7 O O21 MLC . . . C 2 0.843 -17.456 84.4 1 99.2 ? O21 MLC 391 A 1 HETATM 8 O O22 MLC . . . C 2 -1.011 -18.826 85.827 1 98.35 ? O22 MLC 391 A 1 HETATM 9 O O7 MLC . . . C 2 0.67 -20.022 84.226 1 93.58 ? O7 MLC 391 A 1 HETATM 10 C CPB MLC . . . C 2 0.785 -21.34 84.806 1 86.2 ? CPB MLC 391 A 1 HETATM 11 C CPA MLC . . . C 2 0.475 -22.513 83.868 1 78.74 ? CPA MLC 391 A 1 HETATM 12 C CP7 MLC . . . C 2 1.765 -22.931 83.199 1 71.56 ? CP7 MLC 391 A 1 HETATM 13 C CP9 MLC . . . C 2 -0.637 -22.231 82.821 1 79.09 ? CP9 MLC 391 A 1 HETATM 14 C CP8 MLC . . . C 2 -0.051 -23.598 84.791 1 78.4 ? CP8 MLC 391 A 1 HETATM 15 O OP3 MLC . . . C 2 2.688 -21.835 83.086 1 66.15 ? OP3 MLC 391 A 1 HETATM 16 C CP6 MLC . . . C 2 2.294 -24.222 83.806 1 67.48 ? CP6 MLC 391 A 1 HETATM 17 O OP2 MLC . . . C 2 3.312 -24.363 84.457 1 64.15 ? OP2 MLC 391 A 1 HETATM 18 N NP2 MLC . . . C 2 1.487 -25.226 83.479 1 64.1 ? NP2 MLC 391 A 1 HETATM 19 C CP5 MLC . . . C 2 1.553 -26.648 83.658 1 62.52 ? CP5 MLC 391 A 1 HETATM 20 C CP4 MLC . . . C 2 2.139 -26.942 82.271 1 61.28 ? CP4 MLC 391 A 1 HETATM 21 C CP3 MLC . . . C 2 1.934 -28.325 81.726 1 59.95 ? CP3 MLC 391 A 1 HETATM 22 O OP1 MLC . . . C 2 2.416 -29.315 82.259 1 59.31 ? OP1 MLC 391 A 1 HETATM 23 N NP1 MLC . . . C 2 1.253 -28.352 80.599 1 59.55 ? NP1 MLC 391 A 1 HETATM 24 C CP2 MLC . . . C 2 0.856 -29.503 79.792 1 62.53 ? CP2 MLC 391 A 1 HETATM 25 C CP1 MLC . . . C 2 1.974 -30.541 79.707 1 64.05 ? CP1 MLC 391 A 1 HETATM 26 S S MLC . . . C 2 3.094 -30.058 78.393 1 67.22 ? S MLC 391 A 1 HETATM 27 C CM1 MLC . . . C 2 2.421 -30.687 76.905 1 66.07 ? CM1 MLC 391 A 1 HETATM 28 C CM2 MLC . . . C 2 3.316 -31.761 76.36 1 64.6 ? CM2 MLC 391 A 1 HETATM 29 C CM3 MLC . . . C 2 2.82 -32.468 75.16 1 63.18 ? CM3 MLC 391 A 1 HETATM 30 O OM2 MLC . . . C 2 1.368 -30.289 76.421 1 64.74 ? OM2 MLC 391 A 1 HETATM 31 O OM3 MLC . . . C 2 1.884 -33.305 75.244 1 63.88 ? OM3 MLC 391 A 1 HETATM 32 O OM4 MLC . . . C 2 3.438 -32.158 74.138 1 61.13 ? OM4 MLC 391 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #