data_2F43 # _model_server_result.job_id fc_4BiLXVnSj8ysbznFdgA _model_server_result.datetime_utc '2025-02-05 18:01:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 2F43 # _exptl.entry_id 2F43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2F43 _cell.length_a 144.567 _cell.length_b 144.567 _cell.length_c 362.982 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H 1 1,2 A,B,C,D,E,F,G,H 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 216.8505 125.198695 0 2 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 250.397389 0 3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc2 D MG MG . A MG 602 1_555 E O2G ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc3 D MG MG . A MG 602 1_555 E O3B ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc4 B OG1 THR 163 B THR 163 1_555 G MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc5 B NH1 ARG 189 B ARG 189 1_555 G MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc6 F V VO4 . B VO4 601 1_555 H O1B ADP . B ADP 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc7 F O2 VO4 . B VO4 601 1_555 G MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc8 H O2B ADP . B ADP 604 1_555 G MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.136 ? metalc ? metalc9 H O3B ADP . B ADP 604 1_555 G MG MG . B MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 2F43 _atom_sites.fract_transf_matrix[1][1] 0.006917 _atom_sites.fract_transf_matrix[1][2] 0.003994 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 602 602 MG MG . E 5 ATP A 1 603 603 ATP ATP . F 6 VO4 B 1 601 601 VO4 VO4 . G 4 MG B 1 605 605 MG MG . H 7 ADP B 1 604 604 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 45.173 117.363 87.912 1 61.42 ? PG ATP 603 A 1 HETATM 2 O O1G ATP . . . E 5 46.112 117.255 86.745 1 60.28 ? O1G ATP 603 A 1 HETATM 3 O O2G ATP . . . E 5 43.793 116.799 87.54 1 60.43 ? O2G ATP 603 A 1 HETATM 4 O O3G ATP . . . E 5 45.714 116.553 89.074 1 60.61 ? O3G ATP 603 A 1 HETATM 5 P PB ATP . . . E 5 44.614 119.425 89.835 1 58.57 ? PB ATP 603 A 1 HETATM 6 O O1B ATP . . . E 5 44.633 120.863 89.905 1 57.98 ? O1B ATP 603 A 1 HETATM 7 O O2B ATP . . . E 5 45.526 118.79 90.823 1 58.05 ? O2B ATP 603 A 1 HETATM 8 O O3B ATP . . . E 5 45.099 118.949 88.383 1 59.88 ? O3B ATP 603 A 1 HETATM 9 P PA ATP . . . E 5 42.564 117.7 90.743 1 63.65 ? PA ATP 603 A 1 HETATM 10 O O1A ATP . . . E 5 41.225 117.455 90.149 1 62.53 ? O1A ATP 603 A 1 HETATM 11 O O2A ATP . . . E 5 43.472 116.468 90.744 1 63.13 ? O2A ATP 603 A 1 HETATM 12 O O3A ATP . . . E 5 43.127 118.902 89.903 1 60.66 ? O3A ATP 603 A 1 HETATM 13 O O5' ATP . . . E 5 42.396 118.377 92.159 1 63.97 ? O5' ATP 603 A 1 HETATM 14 C C5' ATP . . . E 5 41.532 117.995 93.132 1 66.75 ? C5' ATP 603 A 1 HETATM 15 C C4' ATP . . . E 5 41.797 116.612 93.857 1 68.55 ? C4' ATP 603 A 1 HETATM 16 O O4' ATP . . . E 5 41.219 116.804 95.081 1 69.22 ? O4' ATP 603 A 1 HETATM 17 C C3' ATP . . . E 5 41.046 115.491 93.153 1 69.24 ? C3' ATP 603 A 1 HETATM 18 O O3' ATP . . . E 5 41.941 114.39 93.155 1 69.49 ? O3' ATP 603 A 1 HETATM 19 C C2' ATP . . . E 5 39.746 115.316 94.017 1 69.82 ? C2' ATP 603 A 1 HETATM 20 O O2' ATP . . . E 5 39.191 114.063 94.185 1 70.44 ? O2' ATP 603 A 1 HETATM 21 C C1' ATP . . . E 5 40.078 115.97 95.351 1 70.04 ? C1' ATP 603 A 1 HETATM 22 N N9 ATP . . . E 5 39.245 117.09 95.96 1 71.79 ? N9 ATP 603 A 1 HETATM 23 C C8 ATP . . . E 5 38.362 117.902 95.239 1 72.44 ? C8 ATP 603 A 1 HETATM 24 N N7 ATP . . . E 5 37.836 118.781 96.083 1 73.2 ? N7 ATP 603 A 1 HETATM 25 C C5 ATP . . . E 5 38.331 118.602 97.327 1 73.44 ? C5 ATP 603 A 1 HETATM 26 C C6 ATP . . . E 5 38.172 119.212 98.647 1 73.73 ? C6 ATP 603 A 1 HETATM 27 N N6 ATP . . . E 5 37.515 120.287 98.916 1 74.15 ? N6 ATP 603 A 1 HETATM 28 N N1 ATP . . . E 5 38.899 118.686 99.787 1 73.26 ? N1 ATP 603 A 1 HETATM 29 C C2 ATP . . . E 5 39.809 117.571 99.677 1 73.43 ? C2 ATP 603 A 1 HETATM 30 N N3 ATP . . . E 5 39.968 116.971 98.408 1 73.43 ? N3 ATP 603 A 1 HETATM 31 C C4 ATP . . . E 5 39.25 117.471 97.248 1 72.87 ? C4 ATP 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #