data_2F4Y # _model_server_result.job_id B5gmOvmF795WU_FhAdhC_g _model_server_result.datetime_utc '2024-11-05 01:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 2F4Y # _exptl.entry_id 2F4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2F4Y _cell.length_a 58.97 _cell.length_b 58.97 _cell.length_c 82.14 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,D,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ND1 HIS 16 C HIS 16 3_455 D ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 C OE2 GLU 58 C GLU 58 1_555 D ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc3 C OE1 GLU 58 C GLU 58 1_555 D ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 C NZ LYS 60 C LYS 60 1_555 D ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 D ZN ZN . C ZN 1001 1_555 G O HOH . C HOH 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2F4Y _atom_sites.fract_transf_matrix[1][1] 0.016958 _atom_sites.fract_transf_matrix[1][2] 0.009791 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ZN C 1 1001 1 ZN ZN . E 3 HOH A 1 109 4 HOH HOH . E 3 HOH A 2 110 6 HOH HOH . E 3 HOH A 3 111 7 HOH HOH . E 3 HOH A 4 112 8 HOH HOH . E 3 HOH A 5 113 17 HOH HOH . E 3 HOH A 6 114 20 HOH HOH . E 3 HOH A 7 115 24 HOH HOH . E 3 HOH A 8 116 26 HOH HOH . E 3 HOH A 9 117 27 HOH HOH . E 3 HOH A 10 118 28 HOH HOH . E 3 HOH A 11 119 31 HOH HOH . E 3 HOH A 12 120 34 HOH HOH . E 3 HOH A 13 121 37 HOH HOH . E 3 HOH A 14 122 40 HOH HOH . E 3 HOH A 15 123 41 HOH HOH . E 3 HOH A 16 124 42 HOH HOH . E 3 HOH A 17 125 46 HOH HOH . E 3 HOH A 18 126 48 HOH HOH . E 3 HOH A 19 127 52 HOH HOH . E 3 HOH A 20 128 53 HOH HOH . E 3 HOH A 21 129 58 HOH HOH . E 3 HOH A 22 130 59 HOH HOH . E 3 HOH A 23 131 60 HOH HOH . E 3 HOH A 24 132 68 HOH HOH . E 3 HOH A 25 133 74 HOH HOH . E 3 HOH A 26 134 80 HOH HOH . E 3 HOH A 27 135 83 HOH HOH . E 3 HOH A 28 136 85 HOH HOH . E 3 HOH A 29 137 89 HOH HOH . E 3 HOH A 30 138 97 HOH HOH . E 3 HOH A 31 139 100 HOH HOH . E 3 HOH A 32 140 102 HOH HOH . E 3 HOH A 33 141 107 HOH HOH . E 3 HOH A 34 142 109 HOH HOH . E 3 HOH A 35 143 110 HOH HOH . E 3 HOH A 36 144 119 HOH HOH . E 3 HOH A 37 145 120 HOH HOH . E 3 HOH A 38 146 123 HOH HOH . E 3 HOH A 39 147 126 HOH HOH . E 3 HOH A 40 148 134 HOH HOH . E 3 HOH A 41 149 136 HOH HOH . E 3 HOH A 42 150 138 HOH HOH . E 3 HOH A 43 151 140 HOH HOH . E 3 HOH A 44 152 143 HOH HOH . E 3 HOH A 45 153 146 HOH HOH . E 3 HOH A 46 154 150 HOH HOH . E 3 HOH A 47 155 152 HOH HOH . E 3 HOH A 48 156 154 HOH HOH . E 3 HOH A 49 157 156 HOH HOH . E 3 HOH A 50 158 158 HOH HOH . E 3 HOH A 51 159 159 HOH HOH . E 3 HOH A 52 160 160 HOH HOH . E 3 HOH A 53 161 165 HOH HOH . E 3 HOH A 54 162 167 HOH HOH . E 3 HOH A 55 163 169 HOH HOH . E 3 HOH A 56 164 170 HOH HOH . E 3 HOH A 57 165 173 HOH HOH . E 3 HOH A 58 166 176 HOH HOH . E 3 HOH A 59 167 177 HOH HOH . E 3 HOH A 60 168 178 HOH HOH . E 3 HOH A 61 169 179 HOH HOH . E 3 HOH A 62 170 183 HOH HOH . E 3 HOH A 63 171 185 HOH HOH . E 3 HOH A 64 172 186 HOH HOH . E 3 HOH A 65 173 189 HOH HOH . E 3 HOH A 66 174 191 HOH HOH . E 3 HOH A 67 175 194 HOH HOH . E 3 HOH A 68 176 195 HOH HOH . E 3 HOH A 69 177 200 HOH HOH . E 3 HOH A 70 178 202 HOH HOH . E 3 HOH A 71 179 206 HOH HOH . E 3 HOH A 72 180 208 HOH HOH . E 3 HOH A 73 181 216 HOH HOH . E 3 HOH A 74 182 218 HOH HOH . E 3 HOH A 75 183 219 HOH HOH . E 3 HOH A 76 184 221 HOH HOH . E 3 HOH A 77 185 222 HOH HOH . E 3 HOH A 78 186 223 HOH HOH . E 3 HOH A 79 187 228 HOH HOH . E 3 HOH A 80 188 229 HOH HOH . E 3 HOH A 81 189 232 HOH HOH . E 3 HOH A 82 190 237 HOH HOH . E 3 HOH A 83 191 238 HOH HOH . E 3 HOH A 84 192 241 HOH HOH . E 3 HOH A 85 193 242 HOH HOH . E 3 HOH A 86 194 243 HOH HOH . E 3 HOH A 87 195 249 HOH HOH . E 3 HOH A 88 196 257 HOH HOH . E 3 HOH A 89 197 259 HOH HOH . E 3 HOH A 90 198 262 HOH HOH . E 3 HOH A 91 199 263 HOH HOH . E 3 HOH A 92 200 264 HOH HOH . E 3 HOH A 93 201 266 HOH HOH . E 3 HOH A 94 202 271 HOH HOH . E 3 HOH A 95 203 275 HOH HOH . E 3 HOH A 96 204 278 HOH HOH . E 3 HOH A 97 205 283 HOH HOH . E 3 HOH A 98 206 284 HOH HOH . E 3 HOH A 99 207 287 HOH HOH . E 3 HOH A 100 208 289 HOH HOH . E 3 HOH A 101 209 290 HOH HOH . E 3 HOH A 102 210 292 HOH HOH . E 3 HOH A 103 211 295 HOH HOH . E 3 HOH A 104 212 298 HOH HOH . E 3 HOH A 105 213 302 HOH HOH . E 3 HOH A 106 214 303 HOH HOH . F 3 HOH B 1 109 1 HOH HOH . F 3 HOH B 2 110 2 HOH HOH . F 3 HOH B 3 111 3 HOH HOH . F 3 HOH B 4 112 5 HOH HOH . F 3 HOH B 5 113 11 HOH HOH . F 3 HOH B 6 114 16 HOH HOH . F 3 HOH B 7 115 18 HOH HOH . F 3 HOH B 8 116 21 HOH HOH . F 3 HOH B 9 117 22 HOH HOH . F 3 HOH B 10 118 23 HOH HOH . F 3 HOH B 11 119 25 HOH HOH . F 3 HOH B 12 120 29 HOH HOH . F 3 HOH B 13 121 32 HOH HOH . F 3 HOH B 14 122 33 HOH HOH . F 3 HOH B 15 123 39 HOH HOH . F 3 HOH B 16 124 43 HOH HOH . F 3 HOH B 17 125 47 HOH HOH . F 3 HOH B 18 126 50 HOH HOH . F 3 HOH B 19 127 51 HOH HOH . F 3 HOH B 20 128 55 HOH HOH . F 3 HOH B 21 129 61 HOH HOH . F 3 HOH B 22 130 63 HOH HOH . F 3 HOH B 23 131 67 HOH HOH . F 3 HOH B 24 132 70 HOH HOH . F 3 HOH B 25 133 72 HOH HOH . F 3 HOH B 26 134 75 HOH HOH . F 3 HOH B 27 135 78 HOH HOH . F 3 HOH B 28 136 79 HOH HOH . F 3 HOH B 29 137 82 HOH HOH . F 3 HOH B 30 138 84 HOH HOH . F 3 HOH B 31 139 86 HOH HOH . F 3 HOH B 32 140 87 HOH HOH . F 3 HOH B 33 141 91 HOH HOH . F 3 HOH B 34 142 92 HOH HOH . F 3 HOH B 35 143 94 HOH HOH . F 3 HOH B 36 144 95 HOH HOH . F 3 HOH B 37 145 96 HOH HOH . F 3 HOH B 38 146 101 HOH HOH . F 3 HOH B 39 147 105 HOH HOH . F 3 HOH B 40 148 113 HOH HOH . F 3 HOH B 41 149 115 HOH HOH . F 3 HOH B 42 150 116 HOH HOH . F 3 HOH B 43 151 117 HOH HOH . F 3 HOH B 44 152 118 HOH HOH . F 3 HOH B 45 153 125 HOH HOH . F 3 HOH B 46 154 128 HOH HOH . F 3 HOH B 47 155 130 HOH HOH . F 3 HOH B 48 156 132 HOH HOH . F 3 HOH B 49 157 139 HOH HOH . F 3 HOH B 50 158 141 HOH HOH . F 3 HOH B 51 159 142 HOH HOH . F 3 HOH B 52 160 148 HOH HOH . F 3 HOH B 53 161 153 HOH HOH . F 3 HOH B 54 162 157 HOH HOH . F 3 HOH B 55 163 161 HOH HOH . F 3 HOH B 56 164 162 HOH HOH . F 3 HOH B 57 165 163 HOH HOH . F 3 HOH B 58 166 164 HOH HOH . F 3 HOH B 59 167 166 HOH HOH . F 3 HOH B 60 168 171 HOH HOH . F 3 HOH B 61 169 174 HOH HOH . F 3 HOH B 62 170 184 HOH HOH . F 3 HOH B 63 171 190 HOH HOH . F 3 HOH B 64 172 192 HOH HOH . F 3 HOH B 65 173 193 HOH HOH . F 3 HOH B 66 174 196 HOH HOH . F 3 HOH B 67 175 197 HOH HOH . F 3 HOH B 68 176 201 HOH HOH . F 3 HOH B 69 177 205 HOH HOH . F 3 HOH B 70 178 207 HOH HOH . F 3 HOH B 71 179 212 HOH HOH . F 3 HOH B 72 180 213 HOH HOH . F 3 HOH B 73 181 214 HOH HOH . F 3 HOH B 74 182 220 HOH HOH . F 3 HOH B 75 183 224 HOH HOH . F 3 HOH B 76 184 227 HOH HOH . F 3 HOH B 77 185 233 HOH HOH . F 3 HOH B 78 186 234 HOH HOH . F 3 HOH B 79 187 239 HOH HOH . F 3 HOH B 80 188 244 HOH HOH . F 3 HOH B 81 189 245 HOH HOH . F 3 HOH B 82 190 252 HOH HOH . F 3 HOH B 83 191 254 HOH HOH . F 3 HOH B 84 192 256 HOH HOH . F 3 HOH B 85 193 267 HOH HOH . F 3 HOH B 86 194 268 HOH HOH . F 3 HOH B 87 195 269 HOH HOH . F 3 HOH B 88 196 270 HOH HOH . F 3 HOH B 89 197 277 HOH HOH . F 3 HOH B 90 198 281 HOH HOH . F 3 HOH B 91 199 282 HOH HOH . F 3 HOH B 92 200 288 HOH HOH . F 3 HOH B 93 201 291 HOH HOH . F 3 HOH B 94 202 293 HOH HOH . F 3 HOH B 95 203 294 HOH HOH . F 3 HOH B 96 204 297 HOH HOH . F 3 HOH B 97 205 299 HOH HOH . F 3 HOH B 98 206 300 HOH HOH . G 3 HOH C 1 1002 9 HOH HOH . G 3 HOH C 2 1003 10 HOH HOH . G 3 HOH C 3 1004 12 HOH HOH . G 3 HOH C 4 1005 13 HOH HOH . G 3 HOH C 5 1006 14 HOH HOH . G 3 HOH C 6 1007 15 HOH HOH . G 3 HOH C 7 1008 19 HOH HOH . G 3 HOH C 8 1009 30 HOH HOH . G 3 HOH C 9 1010 35 HOH HOH . G 3 HOH C 10 1011 36 HOH HOH . G 3 HOH C 11 1012 38 HOH HOH . G 3 HOH C 12 1013 44 HOH HOH . G 3 HOH C 13 1014 45 HOH HOH . G 3 HOH C 14 1015 49 HOH HOH . G 3 HOH C 15 1016 54 HOH HOH . G 3 HOH C 16 1017 56 HOH HOH . G 3 HOH C 17 1018 57 HOH HOH . G 3 HOH C 18 1019 62 HOH HOH . G 3 HOH C 19 1020 64 HOH HOH . G 3 HOH C 20 1021 65 HOH HOH . G 3 HOH C 21 1022 66 HOH HOH . G 3 HOH C 22 1023 69 HOH HOH . G 3 HOH C 23 1024 71 HOH HOH . G 3 HOH C 24 1025 73 HOH HOH . G 3 HOH C 25 1026 76 HOH HOH . G 3 HOH C 26 1027 77 HOH HOH . G 3 HOH C 27 1028 81 HOH HOH . G 3 HOH C 28 1029 88 HOH HOH . G 3 HOH C 29 1030 90 HOH HOH . G 3 HOH C 30 1031 93 HOH HOH . G 3 HOH C 31 1032 98 HOH HOH . G 3 HOH C 32 1033 99 HOH HOH . G 3 HOH C 33 1034 103 HOH HOH . G 3 HOH C 34 1035 104 HOH HOH . G 3 HOH C 35 1036 106 HOH HOH . G 3 HOH C 36 1037 108 HOH HOH . G 3 HOH C 37 1038 111 HOH HOH . G 3 HOH C 38 1039 112 HOH HOH . G 3 HOH C 39 1040 114 HOH HOH . G 3 HOH C 40 1041 121 HOH HOH . G 3 HOH C 41 1042 122 HOH HOH . G 3 HOH C 42 1043 124 HOH HOH . G 3 HOH C 43 1044 127 HOH HOH . G 3 HOH C 44 1045 129 HOH HOH . G 3 HOH C 45 1046 131 HOH HOH . G 3 HOH C 46 1047 133 HOH HOH . G 3 HOH C 47 1048 135 HOH HOH . G 3 HOH C 48 1049 137 HOH HOH . G 3 HOH C 49 1050 144 HOH HOH . G 3 HOH C 50 1051 145 HOH HOH . G 3 HOH C 51 1052 147 HOH HOH . G 3 HOH C 52 1053 149 HOH HOH . G 3 HOH C 53 1054 151 HOH HOH . G 3 HOH C 54 1055 155 HOH HOH . G 3 HOH C 55 1056 168 HOH HOH . G 3 HOH C 56 1057 172 HOH HOH . G 3 HOH C 57 1058 175 HOH HOH . G 3 HOH C 58 1059 180 HOH HOH . G 3 HOH C 59 1060 181 HOH HOH . G 3 HOH C 60 1061 182 HOH HOH . G 3 HOH C 61 1062 187 HOH HOH . G 3 HOH C 62 1063 188 HOH HOH . G 3 HOH C 63 1064 198 HOH HOH . G 3 HOH C 64 1065 199 HOH HOH . G 3 HOH C 65 1066 203 HOH HOH . G 3 HOH C 66 1067 204 HOH HOH . G 3 HOH C 67 1068 209 HOH HOH . G 3 HOH C 68 1069 210 HOH HOH . G 3 HOH C 69 1070 211 HOH HOH . G 3 HOH C 70 1071 215 HOH HOH . G 3 HOH C 71 1072 217 HOH HOH . G 3 HOH C 72 1073 225 HOH HOH . G 3 HOH C 73 1074 226 HOH HOH . G 3 HOH C 74 1075 230 HOH HOH . G 3 HOH C 75 1076 231 HOH HOH . G 3 HOH C 76 1077 235 HOH HOH . G 3 HOH C 77 1078 236 HOH HOH . G 3 HOH C 78 1079 240 HOH HOH . G 3 HOH C 79 1080 246 HOH HOH . G 3 HOH C 80 1081 247 HOH HOH . G 3 HOH C 81 1082 248 HOH HOH . G 3 HOH C 82 1083 250 HOH HOH . G 3 HOH C 83 1084 251 HOH HOH . G 3 HOH C 84 1085 253 HOH HOH . G 3 HOH C 85 1086 255 HOH HOH . G 3 HOH C 86 1087 258 HOH HOH . G 3 HOH C 87 1088 260 HOH HOH . G 3 HOH C 88 1089 261 HOH HOH . G 3 HOH C 89 1090 265 HOH HOH . G 3 HOH C 90 1091 272 HOH HOH . G 3 HOH C 91 1092 273 HOH HOH . G 3 HOH C 92 1093 276 HOH HOH . G 3 HOH C 93 1094 279 HOH HOH . G 3 HOH C 94 1095 280 HOH HOH . G 3 HOH C 95 1096 285 HOH HOH . G 3 HOH C 96 1097 286 HOH HOH . G 3 HOH C 97 1098 296 HOH HOH . G 3 HOH C 98 1099 301 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -35.71 _atom_site.Cartn_y 9.202 _atom_site.Cartn_z 6.931 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #