data_2F59 # _model_server_result.job_id LBoMZ-rY0UGDD9PiNSLY3Q _model_server_result.datetime_utc '2025-03-04 08:48:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 2F59 # _exptl.entry_id 2F59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2F59 _cell.length_a 95.317 _cell.length_b 95.317 _cell.length_c 171.743 _cell.Z_PDB 30 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS pentameric 5 author_and_software_defined_assembly 1 PISA decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_644 y+1,x-1,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 142.9755 -82.546943 -171.743 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 67 A ALA 67 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc2 A OE1 GLU 73 A GLU 73 1_555 F CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc3 A OE1 GLU 124 A GLU 124 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc4 A OE2 GLU 124 A GLU 124 1_555 G CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc5 F CA CA . A CA 301 1_555 E O ALA 67 E ALA 67 4_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc6 F CA CA . A CA 301 1_555 E OE1 GLU 73 E GLU 73 4_644 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc7 B O ALA 67 B ALA 67 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc8 B OE1 GLU 73 B GLU 73 1_555 I CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc9 I CA CA . B CA 302 1_555 D O ALA 67 D ALA 67 4_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc10 I CA CA . B CA 302 1_555 D OE1 GLU 73 D GLU 73 4_644 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc11 C O ALA 67 C ALA 67 1_555 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc12 C O ALA 67 C ALA 67 4_644 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc13 C OE1 GLU 73 C GLU 73 1_555 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc14 C OE1 GLU 73 C GLU 73 4_644 K CA CA . C CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc15 C OE1 GLU 124 C GLU 124 1_555 L CA CA . C CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc16 C OE2 GLU 124 C GLU 124 1_555 L CA CA . C CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc17 D OD1 ASP 24 D ASP 24 6_763 N CA CA . D CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc18 D OD1 ASP 25 D ASP 25 1_555 N CA CA . D CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc19 D OD2 ASP 28 D ASP 28 1_555 N CA CA . D CA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2F59 _atom_sites.fract_transf_matrix[1][1] 0.010491 _atom_sites.fract_transf_matrix[1][2] 0.006057 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CA A 1 301 301 CA CA . G 2 CA A 1 304 304 CA CA . H 3 INI A 1 201 201 INI INI . I 2 CA B 1 302 302 CA CA . J 3 INI B 1 202 202 INI INI . K 2 CA C 1 303 303 CA CA . L 2 CA C 1 305 305 CA CA . M 3 INI C 1 203 203 INI INI . N 2 CA D 1 306 306 CA CA . O 3 INI D 1 204 204 INI INI . P 3 INI E 1 205 205 INI INI . Q 4 HOH A 1 305 401 HOH HOH . Q 4 HOH A 2 306 402 HOH HOH . Q 4 HOH A 3 307 403 HOH HOH . Q 4 HOH A 4 308 404 HOH HOH . Q 4 HOH A 5 309 405 HOH HOH . Q 4 HOH A 6 310 406 HOH HOH . Q 4 HOH A 7 311 407 HOH HOH . Q 4 HOH A 8 312 408 HOH HOH . Q 4 HOH A 9 313 409 HOH HOH . Q 4 HOH A 10 314 429 HOH HOH . Q 4 HOH A 11 315 430 HOH HOH . Q 4 HOH A 12 316 431 HOH HOH . Q 4 HOH A 13 317 432 HOH HOH . Q 4 HOH A 14 318 433 HOH HOH . Q 4 HOH A 15 319 435 HOH HOH . Q 4 HOH A 16 320 436 HOH HOH . Q 4 HOH A 17 321 437 HOH HOH . Q 4 HOH A 18 322 438 HOH HOH . Q 4 HOH A 19 323 439 HOH HOH . Q 4 HOH A 20 324 440 HOH HOH . Q 4 HOH A 21 325 441 HOH HOH . Q 4 HOH A 22 326 442 HOH HOH . Q 4 HOH A 23 327 486 HOH HOH . Q 4 HOH A 24 328 494 HOH HOH . Q 4 HOH A 25 329 495 HOH HOH . Q 4 HOH A 26 330 496 HOH HOH . Q 4 HOH A 27 331 497 HOH HOH . Q 4 HOH A 28 332 498 HOH HOH . Q 4 HOH A 29 333 499 HOH HOH . Q 4 HOH A 30 334 500 HOH HOH . Q 4 HOH A 31 335 501 HOH HOH . Q 4 HOH A 32 336 502 HOH HOH . Q 4 HOH A 33 337 504 HOH HOH . Q 4 HOH A 34 338 505 HOH HOH . Q 4 HOH A 35 339 506 HOH HOH . Q 4 HOH A 36 340 507 HOH HOH . Q 4 HOH A 37 341 508 HOH HOH . Q 4 HOH A 38 342 509 HOH HOH . Q 4 HOH A 39 343 511 HOH HOH . Q 4 HOH A 40 344 512 HOH HOH . Q 4 HOH A 41 345 513 HOH HOH . Q 4 HOH A 42 346 514 HOH HOH . Q 4 HOH A 43 347 523 HOH HOH . Q 4 HOH A 44 348 587 HOH HOH . Q 4 HOH A 45 349 588 HOH HOH . Q 4 HOH A 46 350 598 HOH HOH . Q 4 HOH A 47 351 599 HOH HOH . Q 4 HOH A 48 352 604 HOH HOH . Q 4 HOH A 49 353 609 HOH HOH . Q 4 HOH A 50 354 610 HOH HOH . Q 4 HOH A 51 355 611 HOH HOH . Q 4 HOH A 52 356 612 HOH HOH . Q 4 HOH A 53 357 613 HOH HOH . R 4 HOH B 1 303 410 HOH HOH . R 4 HOH B 2 304 411 HOH HOH . R 4 HOH B 3 305 412 HOH HOH . R 4 HOH B 4 306 413 HOH HOH . R 4 HOH B 5 307 414 HOH HOH . R 4 HOH B 6 308 415 HOH HOH . R 4 HOH B 7 309 443 HOH HOH . R 4 HOH B 8 310 444 HOH HOH . R 4 HOH B 9 311 445 HOH HOH . R 4 HOH B 10 312 446 HOH HOH . R 4 HOH B 11 313 447 HOH HOH . R 4 HOH B 12 314 448 HOH HOH . R 4 HOH B 13 315 449 HOH HOH . R 4 HOH B 14 316 450 HOH HOH . R 4 HOH B 15 317 452 HOH HOH . R 4 HOH B 16 318 454 HOH HOH . R 4 HOH B 17 319 510 HOH HOH . R 4 HOH B 18 320 515 HOH HOH . R 4 HOH B 19 321 516 HOH HOH . R 4 HOH B 20 322 517 HOH HOH . R 4 HOH B 21 323 518 HOH HOH . R 4 HOH B 22 324 519 HOH HOH . R 4 HOH B 23 325 520 HOH HOH . R 4 HOH B 24 326 521 HOH HOH . R 4 HOH B 25 327 522 HOH HOH . R 4 HOH B 26 328 524 HOH HOH . R 4 HOH B 27 329 525 HOH HOH . R 4 HOH B 28 330 528 HOH HOH . R 4 HOH B 29 331 529 HOH HOH . R 4 HOH B 30 332 530 HOH HOH . R 4 HOH B 31 333 531 HOH HOH . R 4 HOH B 32 334 532 HOH HOH . R 4 HOH B 33 335 533 HOH HOH . R 4 HOH B 34 336 534 HOH HOH . R 4 HOH B 35 337 577 HOH HOH . R 4 HOH B 36 338 583 HOH HOH . R 4 HOH B 37 339 589 HOH HOH . R 4 HOH B 38 340 607 HOH HOH . R 4 HOH B 39 341 614 HOH HOH . R 4 HOH B 40 342 615 HOH HOH . R 4 HOH B 41 343 616 HOH HOH . R 4 HOH B 42 344 617 HOH HOH . S 4 HOH C 1 306 416 HOH HOH . S 4 HOH C 2 307 417 HOH HOH . S 4 HOH C 3 308 418 HOH HOH . S 4 HOH C 4 309 419 HOH HOH . S 4 HOH C 5 310 420 HOH HOH . S 4 HOH C 6 311 451 HOH HOH . S 4 HOH C 7 312 453 HOH HOH . S 4 HOH C 8 313 459 HOH HOH . S 4 HOH C 9 314 460 HOH HOH . S 4 HOH C 10 315 462 HOH HOH . S 4 HOH C 11 316 465 HOH HOH . S 4 HOH C 12 317 466 HOH HOH . S 4 HOH C 13 318 468 HOH HOH . S 4 HOH C 14 319 526 HOH HOH . S 4 HOH C 15 320 527 HOH HOH . S 4 HOH C 16 321 535 HOH HOH . S 4 HOH C 17 322 536 HOH HOH . S 4 HOH C 18 323 537 HOH HOH . S 4 HOH C 19 324 538 HOH HOH . S 4 HOH C 20 325 539 HOH HOH . S 4 HOH C 21 326 540 HOH HOH . S 4 HOH C 22 327 541 HOH HOH . S 4 HOH C 23 328 542 HOH HOH . S 4 HOH C 24 329 543 HOH HOH . S 4 HOH C 25 330 544 HOH HOH . S 4 HOH C 26 331 545 HOH HOH . S 4 HOH C 27 332 546 HOH HOH . S 4 HOH C 28 333 547 HOH HOH . S 4 HOH C 29 334 548 HOH HOH . S 4 HOH C 30 335 549 HOH HOH . S 4 HOH C 31 336 550 HOH HOH . S 4 HOH C 32 337 551 HOH HOH . S 4 HOH C 33 338 552 HOH HOH . S 4 HOH C 34 339 554 HOH HOH . S 4 HOH C 35 340 555 HOH HOH . S 4 HOH C 36 341 556 HOH HOH . S 4 HOH C 37 342 557 HOH HOH . S 4 HOH C 38 343 594 HOH HOH . S 4 HOH C 39 344 600 HOH HOH . S 4 HOH C 40 345 601 HOH HOH . S 4 HOH C 41 346 602 HOH HOH . S 4 HOH C 42 347 608 HOH HOH . S 4 HOH C 43 348 618 HOH HOH . T 4 HOH D 1 307 421 HOH HOH . T 4 HOH D 2 308 422 HOH HOH . T 4 HOH D 3 309 423 HOH HOH . T 4 HOH D 4 310 424 HOH HOH . T 4 HOH D 5 311 455 HOH HOH . T 4 HOH D 6 312 456 HOH HOH . T 4 HOH D 7 313 457 HOH HOH . T 4 HOH D 8 314 458 HOH HOH . T 4 HOH D 9 315 461 HOH HOH . T 4 HOH D 10 316 463 HOH HOH . T 4 HOH D 11 317 464 HOH HOH . T 4 HOH D 12 318 467 HOH HOH . T 4 HOH D 13 319 469 HOH HOH . T 4 HOH D 14 320 470 HOH HOH . T 4 HOH D 15 321 471 HOH HOH . T 4 HOH D 16 322 472 HOH HOH . T 4 HOH D 17 323 473 HOH HOH . T 4 HOH D 18 324 479 HOH HOH . T 4 HOH D 19 325 553 HOH HOH . T 4 HOH D 20 326 558 HOH HOH . T 4 HOH D 21 327 559 HOH HOH . T 4 HOH D 22 328 560 HOH HOH . T 4 HOH D 23 329 561 HOH HOH . T 4 HOH D 24 330 562 HOH HOH . T 4 HOH D 25 331 563 HOH HOH . T 4 HOH D 26 332 564 HOH HOH . T 4 HOH D 27 333 565 HOH HOH . T 4 HOH D 28 334 566 HOH HOH . T 4 HOH D 29 335 567 HOH HOH . T 4 HOH D 30 336 568 HOH HOH . T 4 HOH D 31 337 571 HOH HOH . T 4 HOH D 32 338 572 HOH HOH . T 4 HOH D 33 339 573 HOH HOH . T 4 HOH D 34 340 574 HOH HOH . T 4 HOH D 35 341 584 HOH HOH . T 4 HOH D 36 342 590 HOH HOH . T 4 HOH D 37 343 591 HOH HOH . T 4 HOH D 38 344 592 HOH HOH . T 4 HOH D 39 345 593 HOH HOH . T 4 HOH D 40 346 595 HOH HOH . T 4 HOH D 41 347 597 HOH HOH . T 4 HOH D 42 348 605 HOH HOH . T 4 HOH D 43 349 606 HOH HOH . U 4 HOH E 1 206 425 HOH HOH . U 4 HOH E 2 207 426 HOH HOH . U 4 HOH E 3 208 427 HOH HOH . U 4 HOH E 4 209 428 HOH HOH . U 4 HOH E 5 210 434 HOH HOH . U 4 HOH E 6 211 474 HOH HOH . U 4 HOH E 7 212 475 HOH HOH . U 4 HOH E 8 213 476 HOH HOH . U 4 HOH E 9 214 477 HOH HOH . U 4 HOH E 10 215 478 HOH HOH . U 4 HOH E 11 216 480 HOH HOH . U 4 HOH E 12 217 481 HOH HOH . U 4 HOH E 13 218 482 HOH HOH . U 4 HOH E 14 219 483 HOH HOH . U 4 HOH E 15 220 484 HOH HOH . U 4 HOH E 16 221 485 HOH HOH . U 4 HOH E 17 222 487 HOH HOH . U 4 HOH E 18 223 488 HOH HOH . U 4 HOH E 19 224 489 HOH HOH . U 4 HOH E 20 225 490 HOH HOH . U 4 HOH E 21 226 491 HOH HOH . U 4 HOH E 22 227 492 HOH HOH . U 4 HOH E 23 228 493 HOH HOH . U 4 HOH E 24 229 503 HOH HOH . U 4 HOH E 25 230 569 HOH HOH . U 4 HOH E 26 231 570 HOH HOH . U 4 HOH E 27 232 575 HOH HOH . U 4 HOH E 28 233 576 HOH HOH . U 4 HOH E 29 234 578 HOH HOH . U 4 HOH E 30 235 579 HOH HOH . U 4 HOH E 31 236 580 HOH HOH . U 4 HOH E 32 237 581 HOH HOH . U 4 HOH E 33 238 582 HOH HOH . U 4 HOH E 34 239 585 HOH HOH . U 4 HOH E 35 240 586 HOH HOH . U 4 HOH E 36 241 596 HOH HOH . U 4 HOH E 37 242 603 HOH HOH . U 4 HOH E 38 243 619 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 106.428 _atom_site.Cartn_y 26.619 _atom_site.Cartn_z -66.24 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #