data_2F5N # _model_server_result.job_id VgLvh6kv4zrf0b4eIevQnw _model_server_result.datetime_utc '2025-03-06 06:14:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 2F5N # _exptl.entry_id 2F5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F5N _cell.length_a 45.379 _cell.length_b 92.947 _cell.length_c 105.195 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SG CYS 249 A CYS 249 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 C SG CYS 252 A CYS 252 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 C SG CYS 269 A CYS 269 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 C SG CYS 272 A CYS 272 1_555 D ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 B DG 2 1_555 B N3 DC 16 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 B DG 2 1_555 B O2 DC 16 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 B DG 2 1_555 B N4 DC 16 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 3 B DG 3 1_555 B N3 DC 15 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 3 B DG 3 1_555 B O2 DC 15 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 3 B DG 3 1_555 B N4 DC 15 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 4 B DT 4 1_555 B N1 DA 14 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 4 B DT 4 1_555 B N6 DA 14 C DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 5 B DA 5 1_555 B N3 DT 13 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 5 B DA 5 1_555 B O4 DT 13 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 6 B DG 6 1_555 B N3 DC 12 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 6 B DG 6 1_555 B O2 DC 12 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 6 B DG 6 1_555 B N4 DC 12 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 7 B DA 7 1_555 B N3 DT 11 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 7 B DA 7 1_555 B O4 DT 11 C DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 B DC 8 1_555 B N1 DG 10 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 B DC 8 1_555 B O6 DG 10 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 B DC 8 1_555 B N2 DG 10 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 9 B DC 9 1_555 B N1 DG 9 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 9 B DC 9 1_555 B O6 DG 9 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 9 B DC 9 1_555 B N2 DG 9 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 10 B DT 10 1_555 B N1 DA 8 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 10 B DT 10 1_555 B N6 DA 8 C DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 11 B DG 11 1_555 B N3 DC 7 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 11 B DG 11 1_555 B O2 DC 7 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 11 B DG 11 1_555 B N4 DC 7 C DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DG 12 B DG 12 1_555 B N3 DC 6 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N2 DG 12 B DG 12 1_555 B O2 DC 6 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O6 DG 12 B DG 12 1_555 B N4 DC 6 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DA 13 B DA 13 1_555 B N3 DT 5 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N6 DA 13 B DA 13 1_555 B O4 DT 5 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DC 14 B DC 14 1_555 B N1 DG 4 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N4 DC 14 B DC 14 1_555 B O6 DG 4 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O2 DC 14 B DC 14 1_555 B N2 DG 4 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 278 n n C1 C2 GOL sing 279 n n C1 H11 GOL sing 280 n n C1 H12 GOL sing 281 n n O1 HO1 GOL sing 282 n n C2 O2 GOL sing 283 n n C2 C3 GOL sing 284 n n C2 H2 GOL sing 285 n n O2 HO2 GOL sing 286 n n C3 O3 GOL sing 287 n n C3 H31 GOL sing 288 n n C3 H32 GOL sing 289 n n O3 HO3 GOL sing 290 n n # _atom_sites.entry_id 2F5N _atom_sites.fract_transf_matrix[1][1] 0.022037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 300 300 ZN ZN . E 5 GOL A 1 301 1 GOL GOL . F 5 GOL A 1 302 2 GOL GOL . G 6 HOH B 1 114 114 HOH HOH . H 6 HOH C 1 36 36 HOH HOH . H 6 HOH C 2 43 43 HOH HOH . H 6 HOH C 3 56 56 HOH HOH . H 6 HOH C 4 89 89 HOH HOH . I 6 HOH A 1 303 1 HOH HOH . I 6 HOH A 2 304 2 HOH HOH . I 6 HOH A 3 305 3 HOH HOH . I 6 HOH A 4 306 4 HOH HOH . I 6 HOH A 5 307 5 HOH HOH . I 6 HOH A 6 308 6 HOH HOH . I 6 HOH A 7 309 7 HOH HOH . I 6 HOH A 8 310 8 HOH HOH . I 6 HOH A 9 311 9 HOH HOH . I 6 HOH A 10 312 10 HOH HOH . I 6 HOH A 11 313 12 HOH HOH . I 6 HOH A 12 314 13 HOH HOH . I 6 HOH A 13 315 14 HOH HOH . I 6 HOH A 14 316 15 HOH HOH . I 6 HOH A 15 317 16 HOH HOH . I 6 HOH A 16 318 17 HOH HOH . I 6 HOH A 17 319 18 HOH HOH . I 6 HOH A 18 320 19 HOH HOH . I 6 HOH A 19 321 20 HOH HOH . I 6 HOH A 20 322 21 HOH HOH . I 6 HOH A 21 323 22 HOH HOH . I 6 HOH A 22 324 23 HOH HOH . I 6 HOH A 23 325 24 HOH HOH . I 6 HOH A 24 326 25 HOH HOH . I 6 HOH A 25 327 26 HOH HOH . I 6 HOH A 26 328 27 HOH HOH . I 6 HOH A 27 329 28 HOH HOH . I 6 HOH A 28 330 29 HOH HOH . I 6 HOH A 29 331 30 HOH HOH . I 6 HOH A 30 332 31 HOH HOH . I 6 HOH A 31 333 32 HOH HOH . I 6 HOH A 32 334 33 HOH HOH . I 6 HOH A 33 335 35 HOH HOH . I 6 HOH A 34 336 38 HOH HOH . I 6 HOH A 35 337 39 HOH HOH . I 6 HOH A 36 338 40 HOH HOH . I 6 HOH A 37 339 41 HOH HOH . I 6 HOH A 38 340 42 HOH HOH . I 6 HOH A 39 341 44 HOH HOH . I 6 HOH A 40 342 45 HOH HOH . I 6 HOH A 41 343 46 HOH HOH . I 6 HOH A 42 344 47 HOH HOH . I 6 HOH A 43 345 48 HOH HOH . I 6 HOH A 44 346 49 HOH HOH . I 6 HOH A 45 347 50 HOH HOH . I 6 HOH A 46 348 51 HOH HOH . I 6 HOH A 47 349 53 HOH HOH . I 6 HOH A 48 350 54 HOH HOH . I 6 HOH A 49 351 55 HOH HOH . I 6 HOH A 50 352 57 HOH HOH . I 6 HOH A 51 353 58 HOH HOH . I 6 HOH A 52 354 59 HOH HOH . I 6 HOH A 53 355 60 HOH HOH . I 6 HOH A 54 356 61 HOH HOH . I 6 HOH A 55 357 62 HOH HOH . I 6 HOH A 56 358 63 HOH HOH . I 6 HOH A 57 359 64 HOH HOH . I 6 HOH A 58 360 65 HOH HOH . I 6 HOH A 59 361 66 HOH HOH . I 6 HOH A 60 362 67 HOH HOH . I 6 HOH A 61 363 68 HOH HOH . I 6 HOH A 62 364 69 HOH HOH . I 6 HOH A 63 365 70 HOH HOH . I 6 HOH A 64 366 71 HOH HOH . I 6 HOH A 65 367 72 HOH HOH . I 6 HOH A 66 368 73 HOH HOH . I 6 HOH A 67 369 74 HOH HOH . I 6 HOH A 68 370 75 HOH HOH . I 6 HOH A 69 371 76 HOH HOH . I 6 HOH A 70 372 77 HOH HOH . I 6 HOH A 71 373 78 HOH HOH . I 6 HOH A 72 374 79 HOH HOH . I 6 HOH A 73 375 80 HOH HOH . I 6 HOH A 74 376 81 HOH HOH . I 6 HOH A 75 377 82 HOH HOH . I 6 HOH A 76 378 83 HOH HOH . I 6 HOH A 77 379 84 HOH HOH . I 6 HOH A 78 380 85 HOH HOH . I 6 HOH A 79 381 86 HOH HOH . I 6 HOH A 80 382 87 HOH HOH . I 6 HOH A 81 383 88 HOH HOH . I 6 HOH A 82 384 90 HOH HOH . I 6 HOH A 83 385 91 HOH HOH . I 6 HOH A 84 386 92 HOH HOH . I 6 HOH A 85 387 93 HOH HOH . I 6 HOH A 86 388 94 HOH HOH . I 6 HOH A 87 389 95 HOH HOH . I 6 HOH A 88 390 96 HOH HOH . I 6 HOH A 89 391 97 HOH HOH . I 6 HOH A 90 392 98 HOH HOH . I 6 HOH A 91 393 99 HOH HOH . I 6 HOH A 92 394 100 HOH HOH . I 6 HOH A 93 395 101 HOH HOH . I 6 HOH A 94 396 102 HOH HOH . I 6 HOH A 95 397 103 HOH HOH . I 6 HOH A 96 398 104 HOH HOH . I 6 HOH A 97 399 105 HOH HOH . I 6 HOH A 98 400 106 HOH HOH . I 6 HOH A 99 401 107 HOH HOH . I 6 HOH A 100 402 108 HOH HOH . I 6 HOH A 101 403 109 HOH HOH . I 6 HOH A 102 404 110 HOH HOH . I 6 HOH A 103 405 111 HOH HOH . I 6 HOH A 104 406 112 HOH HOH . I 6 HOH A 105 407 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -19.103 50.556 -0.903 1 63.25 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . F 5 -19.714 50.562 0.641 1 37.8 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . F 5 -17.729 50.628 -1.295 1 62.51 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . F 5 -16.987 49.975 -0.424 1 60.51 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . F 5 -17.553 51.273 -2.356 1 67.78 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . F 5 -17.778 52.131 -3.669 1 68.14 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #