data_2F6M # _model_server_result.job_id X1yg1wcO-ZdUHz4KOJNh5Q _model_server_result.datetime_utc '2024-12-21 17:25:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":104}' # _entry.id 2F6M # _exptl.entry_id 2F6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.349 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECYLAMINE-N,N-DIMETHYL-N-OXIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F6M _cell.length_a 61.239 _cell.length_b 119.252 _cell.length_c 125.391 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,N,O 1 1 C,D,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C12 H27 N O' _chem_comp.formula_weight 201.349 _chem_comp.id DDQ _chem_comp.mon_nstd_flag . _chem_comp.name DECYLAMINE-N,N-DIMETHYL-N-OXIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 DDQ sing 83 n n N1 CM1 DDQ sing 84 n n N1 CM2 DDQ sing 85 n n N1 C1 DDQ sing 86 n n CM1 HM11 DDQ sing 87 n n CM1 HM12 DDQ sing 88 n n CM1 HM13 DDQ sing 89 n n CM2 HM21 DDQ sing 90 n n CM2 HM22 DDQ sing 91 n n CM2 HM23 DDQ sing 92 n n C1 C2 DDQ sing 93 n n C1 H11 DDQ sing 94 n n C1 H12 DDQ sing 95 n n C2 C3 DDQ sing 96 n n C2 H21 DDQ sing 97 n n C2 H22 DDQ sing 98 n n C3 C4 DDQ sing 99 n n C3 H31 DDQ sing 100 n n C3 H32 DDQ sing 101 n n C4 C5 DDQ sing 102 n n C4 H41 DDQ sing 103 n n C4 H42 DDQ sing 104 n n C5 C6 DDQ sing 105 n n C5 H51 DDQ sing 106 n n C5 H52 DDQ sing 107 n n C6 C7 DDQ sing 108 n n C6 H61 DDQ sing 109 n n C6 H62 DDQ sing 110 n n C7 C8 DDQ sing 111 n n C7 H71 DDQ sing 112 n n C7 H72 DDQ sing 113 n n C8 C9 DDQ sing 114 n n C8 H81 DDQ sing 115 n n C8 H82 DDQ sing 116 n n C9 C10 DDQ sing 117 n n C9 H91 DDQ sing 118 n n C9 H92 DDQ sing 119 n n C10 H101 DDQ sing 120 n n C10 H102 DDQ sing 121 n n C10 H103 DDQ sing 122 n n # _atom_sites.entry_id 2F6M _atom_sites.fract_transf_matrix[1][1] 0.016329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 109 1 MG MG . F 4 DDQ A 1 101 1 DDQ DDQ . G 4 DDQ A 1 102 2 DDQ DDQ . H 4 DDQ A 1 104 4 DDQ DDQ . I 4 DDQ B 1 119 3 DDQ DDQ . J 4 DDQ B 1 120 7 DDQ DDQ . K 4 DDQ C 1 105 5 DDQ DDQ . L 4 DDQ C 1 108 8 DDQ DDQ . M 4 DDQ D 1 119 6 DDQ DDQ . N 5 HOH A 1 2 2 HOH HOH . N 5 HOH A 2 5 5 HOH HOH . N 5 HOH A 3 9 9 HOH HOH . N 5 HOH A 4 12 12 HOH HOH . N 5 HOH A 5 14 14 HOH HOH . N 5 HOH A 6 16 16 HOH HOH . N 5 HOH A 7 22 22 HOH HOH . N 5 HOH A 8 23 23 HOH HOH . N 5 HOH A 9 25 25 HOH HOH . N 5 HOH A 10 33 33 HOH HOH . N 5 HOH A 11 37 37 HOH HOH . O 5 HOH B 1 121 4 HOH HOH . O 5 HOH B 2 122 18 HOH HOH . O 5 HOH B 3 123 20 HOH HOH . O 5 HOH B 4 124 26 HOH HOH . O 5 HOH B 5 125 28 HOH HOH . O 5 HOH B 6 126 30 HOH HOH . O 5 HOH B 7 127 31 HOH HOH . O 5 HOH B 8 128 34 HOH HOH . O 5 HOH B 9 129 36 HOH HOH . P 5 HOH C 1 1 1 HOH HOH . P 5 HOH C 2 3 3 HOH HOH . P 5 HOH C 3 6 6 HOH HOH . P 5 HOH C 4 7 7 HOH HOH . P 5 HOH C 5 8 8 HOH HOH . P 5 HOH C 6 10 10 HOH HOH . P 5 HOH C 7 11 11 HOH HOH . P 5 HOH C 8 13 13 HOH HOH . P 5 HOH C 9 15 15 HOH HOH . P 5 HOH C 10 17 17 HOH HOH . P 5 HOH C 11 19 19 HOH HOH . P 5 HOH C 12 27 27 HOH HOH . P 5 HOH C 13 29 29 HOH HOH . P 5 HOH C 14 35 35 HOH HOH . P 5 HOH C 15 38 38 HOH HOH . P 5 HOH C 16 40 40 HOH HOH . Q 5 HOH D 1 120 21 HOH HOH . Q 5 HOH D 2 121 24 HOH HOH . Q 5 HOH D 3 122 32 HOH HOH . Q 5 HOH D 4 123 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDQ . . . H 4 -0.962 16.921 56.416 1 90.83 ? N1 DDQ 104 A 1 HETATM 2 O O1 DDQ . . . H 4 0.194 16.725 55.536 1 91.25 ? O1 DDQ 104 A 1 HETATM 3 C CM1 DDQ . . . H 4 -1.886 17.894 55.802 1 91.25 ? CM1 DDQ 104 A 1 HETATM 4 C CM2 DDQ . . . H 4 -1.658 15.631 56.564 1 90.99 ? CM2 DDQ 104 A 1 HETATM 5 C C1 DDQ . . . H 4 -0.568 17.404 57.756 1 90.15 ? C1 DDQ 104 A 1 HETATM 6 C C2 DDQ . . . H 4 0.855 17.964 57.817 1 89.01 ? C2 DDQ 104 A 1 HETATM 7 C C3 DDQ . . . H 4 1.315 18.08 59.268 1 87.9 ? C3 DDQ 104 A 1 HETATM 8 C C4 DDQ . . . H 4 2.7 18.71 59.376 1 86.79 ? C4 DDQ 104 A 1 HETATM 9 C C5 DDQ . . . H 4 3.293 18.49 60.766 1 85.79 ? C5 DDQ 104 A 1 HETATM 10 C C6 DDQ . . . H 4 4.065 19.72 61.231 1 84.98 ? C6 DDQ 104 A 1 HETATM 11 C C7 DDQ . . . H 4 4.917 19.419 62.46 1 84.54 ? C7 DDQ 104 A 1 HETATM 12 C C8 DDQ . . . H 4 5.793 20.614 62.831 1 84.1 ? C8 DDQ 104 A 1 HETATM 13 C C9 DDQ . . . H 4 6.773 20.252 63.942 1 83.7 ? C9 DDQ 104 A 1 HETATM 14 C C10 DDQ . . . H 4 8.205 20.525 63.533 1 83.6 ? C10 DDQ 104 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 446 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #