data_2F6X
#
_model_server_result.job_id            qpydcyJbk7pNApA1deNS4A 
_model_server_result.datetime_utc      '2024-11-01 07:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f6x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3002}' 
#
_entry.id    2F6X 
#
_exptl.entry_id    2F6X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              172.074 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SN-GLYCEROL-1-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2F6X 
_cell.length_a            95.88 
_cell.length_b            95.88 
_cell.length_c            166.3 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F6X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H9 O6 P' 
_chem_comp.formula_weight    172.074 
_chem_comp.id                1GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SN-GLYCEROL-1-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 1GP sing 1 n n 
C3 O2 1GP sing 2 n n 
C3 H31 1GP sing 3 n n 
C3 H32 1GP sing 4 n n 
O3 C2 1GP sing 5 n n 
O3 HO3 1GP sing 6 n n 
C2 C1 1GP sing 7 n n 
C2 H2 1GP sing 8 n n 
O2 HO2 1GP sing 9 n n 
C1 O1P 1GP sing 10 n n 
C1 H11 1GP sing 11 n n 
C1 H12 1GP sing 12 n n 
O1P P 1GP sing 13 n n 
O2P P 1GP doub 14 n n 
O3P P 1GP sing 15 n n 
O3P HO3P 1GP sing 16 n n 
O4P P 1GP sing 17 n n 
O4P HO4P 1GP sing 18 n n 
#
_atom_sites.entry_id                     2F6X 
_atom_sites.fract_transf_matrix[1][1]    0.01043 
_atom_sites.fract_transf_matrix[1][2]    0.006022 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012043 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006013 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1GP A 1 3001 3001 1GP 1GP . 
D 3 MPD A 1 4001 4001 MPD MPD . 
E 2 1GP B 1 3002 3002 1GP 1GP . 
F 3 MPD B 1 4002 4002 MPD MPD . 
G 4 HOH A 1 1 1 HOH HOH . 
G 4 HOH A 2 2 2 HOH HOH . 
G 4 HOH A 3 6 6 HOH HOH . 
G 4 HOH A 4 7 7 HOH HOH . 
G 4 HOH A 5 9 9 HOH HOH . 
G 4 HOH A 6 10 10 HOH HOH . 
G 4 HOH A 7 13 13 HOH HOH . 
G 4 HOH A 8 17 17 HOH HOH . 
G 4 HOH A 9 18 18 HOH HOH . 
G 4 HOH A 10 19 19 HOH HOH . 
G 4 HOH A 11 20 20 HOH HOH . 
G 4 HOH A 12 23 23 HOH HOH . 
G 4 HOH A 13 25 25 HOH HOH . 
G 4 HOH A 14 27 27 HOH HOH . 
G 4 HOH A 15 28 28 HOH HOH . 
G 4 HOH A 16 29 29 HOH HOH . 
G 4 HOH A 17 30 30 HOH HOH . 
G 4 HOH A 18 31 31 HOH HOH . 
G 4 HOH A 19 32 32 HOH HOH . 
G 4 HOH A 20 33 33 HOH HOH . 
G 4 HOH A 21 34 34 HOH HOH . 
G 4 HOH A 22 38 38 HOH HOH . 
G 4 HOH A 23 39 39 HOH HOH . 
G 4 HOH A 24 40 40 HOH HOH . 
G 4 HOH A 25 41 41 HOH HOH . 
G 4 HOH A 26 42 42 HOH HOH . 
G 4 HOH A 27 44 44 HOH HOH . 
G 4 HOH A 28 45 45 HOH HOH . 
G 4 HOH A 29 46 46 HOH HOH . 
G 4 HOH A 30 48 48 HOH HOH . 
G 4 HOH A 31 50 50 HOH HOH . 
G 4 HOH A 32 54 54 HOH HOH . 
G 4 HOH A 33 55 55 HOH HOH . 
G 4 HOH A 34 57 57 HOH HOH . 
G 4 HOH A 35 59 59 HOH HOH . 
G 4 HOH A 36 61 61 HOH HOH . 
G 4 HOH A 37 62 62 HOH HOH . 
G 4 HOH A 38 65 65 HOH HOH . 
G 4 HOH A 39 67 67 HOH HOH . 
G 4 HOH A 40 68 68 HOH HOH . 
G 4 HOH A 41 73 73 HOH HOH . 
G 4 HOH A 42 77 77 HOH HOH . 
G 4 HOH A 43 78 78 HOH HOH . 
G 4 HOH A 44 79 79 HOH HOH . 
G 4 HOH A 45 83 83 HOH HOH . 
G 4 HOH A 46 84 84 HOH HOH . 
G 4 HOH A 47 85 85 HOH HOH . 
G 4 HOH A 48 87 87 HOH HOH . 
G 4 HOH A 49 88 88 HOH HOH . 
G 4 HOH A 50 89 89 HOH HOH . 
G 4 HOH A 51 92 92 HOH HOH . 
G 4 HOH A 52 93 93 HOH HOH . 
G 4 HOH A 53 96 96 HOH HOH . 
G 4 HOH A 54 99 99 HOH HOH . 
G 4 HOH A 55 100 100 HOH HOH . 
G 4 HOH A 56 101 101 HOH HOH . 
G 4 HOH A 57 105 105 HOH HOH . 
G 4 HOH A 58 106 106 HOH HOH . 
G 4 HOH A 59 109 109 HOH HOH . 
G 4 HOH A 60 111 111 HOH HOH . 
G 4 HOH A 61 113 113 HOH HOH . 
G 4 HOH A 62 118 118 HOH HOH . 
G 4 HOH A 63 119 119 HOH HOH . 
G 4 HOH A 64 122 122 HOH HOH . 
G 4 HOH A 65 124 124 HOH HOH . 
G 4 HOH A 66 126 126 HOH HOH . 
G 4 HOH A 67 128 128 HOH HOH . 
G 4 HOH A 68 130 130 HOH HOH . 
G 4 HOH A 69 135 135 HOH HOH . 
G 4 HOH A 70 136 136 HOH HOH . 
G 4 HOH A 71 137 137 HOH HOH . 
G 4 HOH A 72 139 139 HOH HOH . 
G 4 HOH A 73 141 141 HOH HOH . 
G 4 HOH A 74 142 142 HOH HOH . 
G 4 HOH A 75 143 143 HOH HOH . 
G 4 HOH A 76 144 144 HOH HOH . 
G 4 HOH A 77 145 145 HOH HOH . 
G 4 HOH A 78 148 148 HOH HOH . 
G 4 HOH A 79 149 149 HOH HOH . 
G 4 HOH A 80 150 150 HOH HOH . 
G 4 HOH A 81 152 152 HOH HOH . 
G 4 HOH A 82 153 153 HOH HOH . 
G 4 HOH A 83 156 156 HOH HOH . 
G 4 HOH A 84 159 159 HOH HOH . 
G 4 HOH A 85 163 163 HOH HOH . 
G 4 HOH A 86 166 166 HOH HOH . 
G 4 HOH A 87 167 167 HOH HOH . 
G 4 HOH A 88 168 168 HOH HOH . 
G 4 HOH A 89 169 169 HOH HOH . 
G 4 HOH A 90 170 170 HOH HOH . 
G 4 HOH A 91 172 172 HOH HOH . 
G 4 HOH A 92 176 176 HOH HOH . 
G 4 HOH A 93 177 177 HOH HOH . 
G 4 HOH A 94 178 178 HOH HOH . 
G 4 HOH A 95 180 180 HOH HOH . 
G 4 HOH A 96 181 181 HOH HOH . 
G 4 HOH A 97 183 183 HOH HOH . 
G 4 HOH A 98 184 184 HOH HOH . 
G 4 HOH A 99 185 185 HOH HOH . 
G 4 HOH A 100 187 187 HOH HOH . 
G 4 HOH A 101 191 191 HOH HOH . 
G 4 HOH A 102 194 194 HOH HOH . 
G 4 HOH A 103 195 195 HOH HOH . 
G 4 HOH A 104 197 197 HOH HOH . 
G 4 HOH A 105 201 201 HOH HOH . 
G 4 HOH A 106 202 202 HOH HOH . 
G 4 HOH A 107 204 204 HOH HOH . 
G 4 HOH A 108 207 207 HOH HOH . 
G 4 HOH A 109 208 208 HOH HOH . 
G 4 HOH A 110 209 209 HOH HOH . 
G 4 HOH A 111 211 211 HOH HOH . 
G 4 HOH A 112 212 212 HOH HOH . 
G 4 HOH A 113 214 214 HOH HOH . 
G 4 HOH A 114 215 215 HOH HOH . 
G 4 HOH A 115 216 216 HOH HOH . 
G 4 HOH A 116 217 217 HOH HOH . 
G 4 HOH A 117 218 218 HOH HOH . 
G 4 HOH A 118 219 219 HOH HOH . 
G 4 HOH A 119 220 220 HOH HOH . 
G 4 HOH A 120 221 221 HOH HOH . 
G 4 HOH A 121 222 222 HOH HOH . 
H 4 HOH B 1 3 3 HOH HOH . 
H 4 HOH B 2 4 4 HOH HOH . 
H 4 HOH B 3 5 5 HOH HOH . 
H 4 HOH B 4 8 8 HOH HOH . 
H 4 HOH B 5 11 11 HOH HOH . 
H 4 HOH B 6 12 12 HOH HOH . 
H 4 HOH B 7 14 14 HOH HOH . 
H 4 HOH B 8 15 15 HOH HOH . 
H 4 HOH B 9 16 16 HOH HOH . 
H 4 HOH B 10 21 21 HOH HOH . 
H 4 HOH B 11 22 22 HOH HOH . 
H 4 HOH B 12 24 24 HOH HOH . 
H 4 HOH B 13 26 26 HOH HOH . 
H 4 HOH B 14 35 35 HOH HOH . 
H 4 HOH B 15 36 36 HOH HOH . 
H 4 HOH B 16 37 37 HOH HOH . 
H 4 HOH B 17 43 43 HOH HOH . 
H 4 HOH B 18 47 47 HOH HOH . 
H 4 HOH B 19 49 49 HOH HOH . 
H 4 HOH B 20 51 51 HOH HOH . 
H 4 HOH B 21 52 52 HOH HOH . 
H 4 HOH B 22 53 53 HOH HOH . 
H 4 HOH B 23 56 56 HOH HOH . 
H 4 HOH B 24 58 58 HOH HOH . 
H 4 HOH B 25 60 60 HOH HOH . 
H 4 HOH B 26 63 63 HOH HOH . 
H 4 HOH B 27 64 64 HOH HOH . 
H 4 HOH B 28 66 66 HOH HOH . 
H 4 HOH B 29 69 69 HOH HOH . 
H 4 HOH B 30 70 70 HOH HOH . 
H 4 HOH B 31 71 71 HOH HOH . 
H 4 HOH B 32 72 72 HOH HOH . 
H 4 HOH B 33 74 74 HOH HOH . 
H 4 HOH B 34 75 75 HOH HOH . 
H 4 HOH B 35 76 76 HOH HOH . 
H 4 HOH B 36 80 80 HOH HOH . 
H 4 HOH B 37 81 81 HOH HOH . 
H 4 HOH B 38 82 82 HOH HOH . 
H 4 HOH B 39 86 86 HOH HOH . 
H 4 HOH B 40 90 90 HOH HOH . 
H 4 HOH B 41 91 91 HOH HOH . 
H 4 HOH B 42 94 94 HOH HOH . 
H 4 HOH B 43 95 95 HOH HOH . 
H 4 HOH B 44 97 97 HOH HOH . 
H 4 HOH B 45 98 98 HOH HOH . 
H 4 HOH B 46 102 102 HOH HOH . 
H 4 HOH B 47 103 103 HOH HOH . 
H 4 HOH B 48 104 104 HOH HOH . 
H 4 HOH B 49 107 107 HOH HOH . 
H 4 HOH B 50 108 108 HOH HOH . 
H 4 HOH B 51 110 110 HOH HOH . 
H 4 HOH B 52 112 112 HOH HOH . 
H 4 HOH B 53 114 114 HOH HOH . 
H 4 HOH B 54 115 115 HOH HOH . 
H 4 HOH B 55 116 116 HOH HOH . 
H 4 HOH B 56 117 117 HOH HOH . 
H 4 HOH B 57 120 120 HOH HOH . 
H 4 HOH B 58 121 121 HOH HOH . 
H 4 HOH B 59 123 123 HOH HOH . 
H 4 HOH B 60 125 125 HOH HOH . 
H 4 HOH B 61 127 127 HOH HOH . 
H 4 HOH B 62 129 129 HOH HOH . 
H 4 HOH B 63 131 131 HOH HOH . 
H 4 HOH B 64 132 132 HOH HOH . 
H 4 HOH B 65 133 133 HOH HOH . 
H 4 HOH B 66 134 134 HOH HOH . 
H 4 HOH B 67 138 138 HOH HOH . 
H 4 HOH B 68 140 140 HOH HOH . 
H 4 HOH B 69 146 146 HOH HOH . 
H 4 HOH B 70 147 147 HOH HOH . 
H 4 HOH B 71 151 151 HOH HOH . 
H 4 HOH B 72 154 154 HOH HOH . 
H 4 HOH B 73 155 155 HOH HOH . 
H 4 HOH B 74 157 157 HOH HOH . 
H 4 HOH B 75 158 158 HOH HOH . 
H 4 HOH B 76 160 160 HOH HOH . 
H 4 HOH B 77 161 161 HOH HOH . 
H 4 HOH B 78 162 162 HOH HOH . 
H 4 HOH B 79 164 164 HOH HOH . 
H 4 HOH B 80 165 165 HOH HOH . 
H 4 HOH B 81 171 171 HOH HOH . 
H 4 HOH B 82 173 173 HOH HOH . 
H 4 HOH B 83 174 174 HOH HOH . 
H 4 HOH B 84 175 175 HOH HOH . 
H 4 HOH B 85 179 179 HOH HOH . 
H 4 HOH B 86 182 182 HOH HOH . 
H 4 HOH B 87 186 186 HOH HOH . 
H 4 HOH B 88 188 188 HOH HOH . 
H 4 HOH B 89 189 189 HOH HOH . 
H 4 HOH B 90 190 190 HOH HOH . 
H 4 HOH B 91 192 192 HOH HOH . 
H 4 HOH B 92 193 193 HOH HOH . 
H 4 HOH B 93 196 196 HOH HOH . 
H 4 HOH B 94 198 198 HOH HOH . 
H 4 HOH B 95 199 199 HOH HOH . 
H 4 HOH B 96 200 200 HOH HOH . 
H 4 HOH B 97 203 203 HOH HOH . 
H 4 HOH B 98 205 205 HOH HOH . 
H 4 HOH B 99 206 206 HOH HOH . 
H 4 HOH B 100 210 210 HOH HOH . 
H 4 HOH B 101 213 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C3 1GP . . . E 2 36.504 5.063 14.514 1 57.9 ? C3 1GP 3002 B 1 
HETATM 2 O O3 1GP . . . E 2 34.723 6.129 13.27 1 32.53 ? O3 1GP 3002 B 1 
HETATM 3 C C2 1GP . . . E 2 35.605 6.344 14.385 1 57.94 ? C2 1GP 3002 B 1 
HETATM 4 O O2 1GP . . . E 2 35.973 4.108 15.488 1 49.99 ? O2 1GP 3002 B 1 
HETATM 5 C C1 1GP . . . E 2 36.456 7.69 14.181 1 44.98 ? C1 1GP 3002 B 1 
HETATM 6 O O1P 1GP . . . E 2 37.921 7.464 13.982 1 62.1 ? O1P 1GP 3002 B 1 
HETATM 7 O O2P 1GP . . . E 2 38.471 9.982 14.285 1 40.43 ? O2P 1GP 3002 B 1 
HETATM 8 O O3P 1GP . . . E 2 40.303 8.385 14.571 1 47.52 ? O3P 1GP 3002 B 1 
HETATM 9 O O4P 1GP . . . E 2 39.491 8.843 12.352 1 51 ? O4P 1GP 3002 B 1 
HETATM 10 P P 1GP . . . E 2 39.059 8.701 13.783 1 68.47 ? P 1GP 3002 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#