data_2F7Z
#
_model_server_result.job_id            tLreWpHaMmzCr7Q9soiH_g 
_model_server_result.datetime_utc      '2025-01-18 09:15:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f7z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    2F7Z 
#
_exptl.entry_id    2F7Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.456 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-1-(1H-INDOL-3-YLMETHYL)-2-(2-PYRIDIN-4-YL-[1,7]NAPHTYRIDIN-5-YLOXY)-EHYLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2F7Z 
_cell.length_a            73.134 
_cell.length_b            75.031 
_cell.length_c            80.112 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F7Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H21 N5 O' 
_chem_comp.formula_weight    395.456 
_chem_comp.id                6EA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-1-(1H-INDOL-3-YLMETHYL)-2-(2-PYRIDIN-4-YL-[1,7]NAPHTYRIDIN-5-YLOXY)-EHYLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 6EA sing 1 n y 
N1 C6 6EA doub 2 n y 
C2 C3 6EA doub 3 n y 
C2 H2 6EA sing 4 n n 
C3 C4 6EA sing 5 n y 
C3 H3 6EA sing 6 n n 
C4 C5 6EA doub 7 n y 
C4 C11 6EA sing 8 n y 
C5 C6 6EA sing 9 n y 
C5 H5 6EA sing 10 n n 
C6 H6 6EA sing 11 n n 
C11 C12 6EA sing 12 n y 
C11 N16 6EA doub 13 n y 
C12 C13 6EA doub 14 n y 
C12 H12 6EA sing 15 n n 
C13 C14 6EA sing 16 n y 
C13 H13 6EA sing 17 n n 
C14 C15 6EA sing 18 n y 
C14 C19 6EA doub 19 n y 
C15 N16 6EA sing 20 n y 
C15 C22 6EA doub 21 n y 
C19 C20 6EA sing 22 n y 
C19 O25 6EA sing 23 n n 
C20 N21 6EA doub 24 n y 
C20 H20 6EA sing 25 n n 
N21 C22 6EA sing 26 n y 
C22 H22 6EA sing 27 n n 
O25 C26 6EA sing 28 n n 
C26 C27 6EA sing 29 n n 
C26 H261 6EA sing 30 n n 
C26 H262 6EA sing 31 n n 
C27 N30 6EA sing 32 n n 
C27 C31 6EA sing 33 n n 
C27 H27 6EA sing 34 n n 
N30 H301 6EA sing 35 n n 
N30 H302 6EA sing 36 n n 
C31 C33 6EA sing 37 n n 
C31 H311 6EA sing 38 n n 
C31 H312 6EA sing 39 n n 
C33 C36 6EA doub 40 n y 
C33 C39 6EA sing 41 n y 
C36 N37 6EA sing 42 n y 
C36 H36 6EA sing 43 n n 
N37 C38 6EA sing 44 n y 
N37 H37 6EA sing 45 n n 
C38 C39 6EA doub 46 n y 
C38 C43 6EA sing 47 n y 
C39 C46 6EA sing 48 n y 
C43 C44 6EA doub 49 n y 
C43 H43 6EA sing 50 n n 
C44 C45 6EA sing 51 n y 
C44 H44 6EA sing 52 n n 
C45 C46 6EA doub 53 n y 
C45 H45 6EA sing 54 n n 
C46 H46 6EA sing 55 n n 
#
_atom_sites.entry_id                     2F7Z 
_atom_sites.fract_transf_matrix[1][1]    0.013674 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013328 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           6EA 
_pdbx_nonpoly_scheme.pdb_strand_id    E 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1000 
_pdbx_nonpoly_scheme.auth_seq_num     1000 
_pdbx_nonpoly_scheme.pdb_mon_id       6EA 
_pdbx_nonpoly_scheme.auth_mon_id      6EA 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 6EA . . . C 3 2.902 10.06 4.368 1 22.37 ? N1 6EA 1000 E 1 
HETATM 2 C C2 6EA . . . C 3 3.231 10.165 3.048 1 22.37 ? C2 6EA 1000 E 1 
HETATM 3 C C3 6EA . . . C 3 4.541 10.011 2.576 1 22.37 ? C3 6EA 1000 E 1 
HETATM 4 C C4 6EA . . . C 3 5.58 9.73 3.483 1 22.37 ? C4 6EA 1000 E 1 
HETATM 5 C C5 6EA . . . C 3 5.241 9.619 4.848 1 22.37 ? C5 6EA 1000 E 1 
HETATM 6 C C6 6EA . . . C 3 3.902 9.792 5.245 1 22.37 ? C6 6EA 1000 E 1 
HETATM 7 C C11 6EA . . . C 3 6.972 9.554 2.954 1 22.37 ? C11 6EA 1000 E 1 
HETATM 8 C C12 6EA . . . C 3 8.096 9.249 3.744 1 22.37 ? C12 6EA 1000 E 1 
HETATM 9 C C13 6EA . . . C 3 9.361 9.088 3.127 1 22.37 ? C13 6EA 1000 E 1 
HETATM 10 C C14 6EA . . . C 3 9.517 9.237 1.71 1 22.37 ? C14 6EA 1000 E 1 
HETATM 11 C C15 6EA . . . C 3 8.361 9.56 0.916 1 22.37 ? C15 6EA 1000 E 1 
HETATM 12 N N16 6EA . . . C 3 7.144 9.7 1.57 1 22.37 ? N16 6EA 1000 E 1 
HETATM 13 C C19 6EA . . . C 3 10.793 9.062 1.089 1 22.37 ? C19 6EA 1000 E 1 
HETATM 14 C C20 6EA . . . C 3 10.832 9.239 -0.331 1 22.37 ? C20 6EA 1000 E 1 
HETATM 15 N N21 6EA . . . C 3 9.74 9.554 -1.086 1 22.37 ? N21 6EA 1000 E 1 
HETATM 16 C C22 6EA . . . C 3 8.511 9.713 -0.495 1 22.37 ? C22 6EA 1000 E 1 
HETATM 17 O O25 6EA . . . C 3 11.88 8.724 1.919 1 22.37 ? O25 6EA 1000 E 1 
HETATM 18 C C26 6EA . . . C 3 13.143 8.515 1.351 1 22.37 ? C26 6EA 1000 E 1 
HETATM 19 C C27 6EA . . . C 3 14.039 8.19 2.535 1 22.37 ? C27 6EA 1000 E 1 
HETATM 20 N N30 6EA . . . C 3 14.904 7.093 2.147 1 22.37 ? N30 6EA 1000 E 1 
HETATM 21 C C31 6EA . . . C 3 14.91 9.374 3.04 1 22.37 ? C31 6EA 1000 E 1 
HETATM 22 C C33 6EA . . . C 3 15.505 10.303 1.994 1 22.37 ? C33 6EA 1000 E 1 
HETATM 23 C C36 6EA . . . C 3 16.768 10.149 1.452 1 22.37 ? C36 6EA 1000 E 1 
HETATM 24 N N37 6EA . . . C 3 17.005 11.143 0.54 1 22.37 ? N37 6EA 1000 E 1 
HETATM 25 C C38 6EA . . . C 3 15.895 11.962 0.476 1 22.37 ? C38 6EA 1000 E 1 
HETATM 26 C C39 6EA . . . C 3 14.92 11.465 1.38 1 22.37 ? C39 6EA 1000 E 1 
HETATM 27 C C43 6EA . . . C 3 15.691 13.093 -0.315 1 22.37 ? C43 6EA 1000 E 1 
HETATM 28 C C44 6EA . . . C 3 14.455 13.786 -0.221 1 22.37 ? C44 6EA 1000 E 1 
HETATM 29 C C45 6EA . . . C 3 13.435 13.333 0.672 1 22.37 ? C45 6EA 1000 E 1 
HETATM 30 C C46 6EA . . . C 3 13.648 12.179 1.48 1 22.37 ? C46 6EA 1000 E 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           30 
#