data_2F81 # _model_server_result.job_id rb8-hH-U-uzHr5tGfXJCHw _model_server_result.datetime_utc '2024-11-13 11:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2F81 # _exptl.entry_id 2F81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F81 _cell.length_a 58.26 _cell.length_b 85.91 _cell.length_c 46.051 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc2 C NA NA . A NA 401 1_555 I O HOH . A HOH 1054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc3 C NA NA . A NA 401 1_555 I O HOH . A HOH 1069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 C NA NA . A NA 401 1_555 I O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc5 C NA NA . A NA 401 1_555 I O HOH . A HOH 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 C NA NA . A NA 401 1_555 I O HOH . A HOH 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2F81 _atom_sites.fract_transf_matrix[1][1] 0.017164 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 401 NA NA . D 3 CL A 1 403 403 CL CL . E 4 017 A 1 302 302 017 UIC . F 3 CL B 1 402 402 CL CL . G 5 GOL B 1 501 501 GOL GOL . H 5 GOL B 1 502 502 GOL GOL . I 6 HOH A 1 1002 1002 HOH HOH . I 6 HOH A 2 1004 1004 HOH HOH . I 6 HOH A 3 1007 1007 HOH HOH . I 6 HOH A 4 1008 1008 HOH HOH . I 6 HOH A 5 1009 1009 HOH HOH . I 6 HOH A 6 1010 1010 HOH HOH . I 6 HOH A 7 1012 1012 HOH HOH . I 6 HOH A 8 1023 1023 HOH HOH . I 6 HOH A 9 1027 1027 HOH HOH . I 6 HOH A 10 1028 1028 HOH HOH . I 6 HOH A 11 1029 1029 HOH HOH . I 6 HOH A 12 1032 1032 HOH HOH . I 6 HOH A 13 1033 1033 HOH HOH . I 6 HOH A 14 1037 1037 HOH HOH . I 6 HOH A 15 1038 1038 HOH HOH . I 6 HOH A 16 1040 1040 HOH HOH . I 6 HOH A 17 1043 1043 HOH HOH . I 6 HOH A 18 1045 1045 HOH HOH . I 6 HOH A 19 1047 1047 HOH HOH . I 6 HOH A 20 1051 1051 HOH HOH . I 6 HOH A 21 1053 1053 HOH HOH . I 6 HOH A 22 1054 1054 HOH HOH . I 6 HOH A 23 1055 1055 HOH HOH . I 6 HOH A 24 1056 1056 HOH HOH . I 6 HOH A 25 1060 1060 HOH HOH . I 6 HOH A 26 1062 1062 HOH HOH . I 6 HOH A 27 1064 1064 HOH HOH . I 6 HOH A 28 1065 1065 HOH HOH . I 6 HOH A 29 1066 1066 HOH HOH . I 6 HOH A 30 1069 1069 HOH HOH . I 6 HOH A 31 1070 1070 HOH HOH . I 6 HOH A 32 1078 1078 HOH HOH . I 6 HOH A 33 1079 1079 HOH HOH . I 6 HOH A 34 1081 1081 HOH HOH . I 6 HOH A 35 1082 1082 HOH HOH . I 6 HOH A 36 1084 1084 HOH HOH . I 6 HOH A 37 1086 1086 HOH HOH . I 6 HOH A 38 1087 1087 HOH HOH . I 6 HOH A 39 1088 1088 HOH HOH . I 6 HOH A 40 1092 1092 HOH HOH . I 6 HOH A 41 1093 1093 HOH HOH . I 6 HOH A 42 1094 1094 HOH HOH . I 6 HOH A 43 1097 1097 HOH HOH . I 6 HOH A 44 1101 1101 HOH HOH . I 6 HOH A 45 1102 1102 HOH HOH . I 6 HOH A 46 1103 1103 HOH HOH . I 6 HOH A 47 1104 1104 HOH HOH . I 6 HOH A 48 1106 1106 HOH HOH . I 6 HOH A 49 1109 1109 HOH HOH . I 6 HOH A 50 1113 1113 HOH HOH . I 6 HOH A 51 1116 1116 HOH HOH . I 6 HOH A 52 1117 1117 HOH HOH . I 6 HOH A 53 1121 1121 HOH HOH . I 6 HOH A 54 1123 1123 HOH HOH . I 6 HOH A 55 1125 1125 HOH HOH . I 6 HOH A 56 1129 1129 HOH HOH . I 6 HOH A 57 1132 1132 HOH HOH . I 6 HOH A 58 1133 1133 HOH HOH . I 6 HOH A 59 1135 1135 HOH HOH . I 6 HOH A 60 1139 1139 HOH HOH . I 6 HOH A 61 1140 1140 HOH HOH . I 6 HOH A 62 1141 1141 HOH HOH . I 6 HOH A 63 1142 1142 HOH HOH . I 6 HOH A 64 1143 1143 HOH HOH . I 6 HOH A 65 1145 1145 HOH HOH . I 6 HOH A 66 1149 1149 HOH HOH . I 6 HOH A 67 1151 1151 HOH HOH . I 6 HOH A 68 1152 1152 HOH HOH . I 6 HOH A 69 1157 1157 HOH HOH . I 6 HOH A 70 1161 1161 HOH HOH . I 6 HOH A 71 1162 1162 HOH HOH . I 6 HOH A 72 1165 1165 HOH HOH . I 6 HOH A 73 1167 1167 HOH HOH . I 6 HOH A 74 1170 1170 HOH HOH . I 6 HOH A 75 1172 1172 HOH HOH . I 6 HOH A 76 1176 1176 HOH HOH . I 6 HOH A 77 1177 1177 HOH HOH . I 6 HOH A 78 1185 1185 HOH HOH . I 6 HOH A 79 1186 1186 HOH HOH . I 6 HOH A 80 1187 1187 HOH HOH . I 6 HOH A 81 1188 1188 HOH HOH . I 6 HOH A 82 1189 1189 HOH HOH . I 6 HOH A 83 1191 1191 HOH HOH . I 6 HOH A 84 1192 1192 HOH HOH . I 6 HOH A 85 1195 1195 HOH HOH . I 6 HOH A 86 1196 1196 HOH HOH . I 6 HOH A 87 1199 1199 HOH HOH . I 6 HOH A 88 1200 1200 HOH HOH . I 6 HOH A 89 1204 1204 HOH HOH . I 6 HOH A 90 1206 1206 HOH HOH . I 6 HOH A 91 1207 1207 HOH HOH . I 6 HOH A 92 1208 1208 HOH HOH . I 6 HOH A 93 1212 1212 HOH HOH . J 6 HOH B 1 1001 1001 HOH HOH . J 6 HOH B 2 1003 1003 HOH HOH . J 6 HOH B 3 1005 1005 HOH HOH . J 6 HOH B 4 1006 1006 HOH HOH . J 6 HOH B 5 1011 1011 HOH HOH . J 6 HOH B 6 1013 1013 HOH HOH . J 6 HOH B 7 1014 1014 HOH HOH . J 6 HOH B 8 1015 1015 HOH HOH . J 6 HOH B 9 1016 1016 HOH HOH . J 6 HOH B 10 1017 1017 HOH HOH . J 6 HOH B 11 1018 1018 HOH HOH . J 6 HOH B 12 1019 1019 HOH HOH . J 6 HOH B 13 1020 1020 HOH HOH . J 6 HOH B 14 1021 1021 HOH HOH . J 6 HOH B 15 1022 1022 HOH HOH . J 6 HOH B 16 1024 1024 HOH HOH . J 6 HOH B 17 1025 1025 HOH HOH . J 6 HOH B 18 1026 1026 HOH HOH . J 6 HOH B 19 1030 1030 HOH HOH . J 6 HOH B 20 1031 1031 HOH HOH . J 6 HOH B 21 1034 1034 HOH HOH . J 6 HOH B 22 1035 1035 HOH HOH . J 6 HOH B 23 1036 1036 HOH HOH . J 6 HOH B 24 1039 1039 HOH HOH . J 6 HOH B 25 1041 1041 HOH HOH . J 6 HOH B 26 1042 1042 HOH HOH . J 6 HOH B 27 1044 1044 HOH HOH . J 6 HOH B 28 1046 1046 HOH HOH . J 6 HOH B 29 1048 1048 HOH HOH . J 6 HOH B 30 1049 1049 HOH HOH . J 6 HOH B 31 1050 1050 HOH HOH . J 6 HOH B 32 1052 1052 HOH HOH . J 6 HOH B 33 1057 1057 HOH HOH . J 6 HOH B 34 1058 1058 HOH HOH . J 6 HOH B 35 1059 1059 HOH HOH . J 6 HOH B 36 1061 1061 HOH HOH . J 6 HOH B 37 1063 1063 HOH HOH . J 6 HOH B 38 1067 1067 HOH HOH . J 6 HOH B 39 1068 1068 HOH HOH . J 6 HOH B 40 1071 1071 HOH HOH . J 6 HOH B 41 1072 1072 HOH HOH . J 6 HOH B 42 1073 1073 HOH HOH . J 6 HOH B 43 1074 1074 HOH HOH . J 6 HOH B 44 1075 1075 HOH HOH . J 6 HOH B 45 1076 1076 HOH HOH . J 6 HOH B 46 1077 1077 HOH HOH . J 6 HOH B 47 1080 1080 HOH HOH . J 6 HOH B 48 1083 1083 HOH HOH . J 6 HOH B 49 1085 1085 HOH HOH . J 6 HOH B 50 1089 1089 HOH HOH . J 6 HOH B 51 1090 1090 HOH HOH . J 6 HOH B 52 1091 1091 HOH HOH . J 6 HOH B 53 1095 1095 HOH HOH . J 6 HOH B 54 1096 1096 HOH HOH . J 6 HOH B 55 1098 1098 HOH HOH . J 6 HOH B 56 1099 1099 HOH HOH . J 6 HOH B 57 1100 1100 HOH HOH . J 6 HOH B 58 1105 1105 HOH HOH . J 6 HOH B 59 1107 1107 HOH HOH . J 6 HOH B 60 1108 1108 HOH HOH . J 6 HOH B 61 1110 1110 HOH HOH . J 6 HOH B 62 1111 1111 HOH HOH . J 6 HOH B 63 1112 1112 HOH HOH . J 6 HOH B 64 1114 1114 HOH HOH . J 6 HOH B 65 1115 1115 HOH HOH . J 6 HOH B 66 1118 1118 HOH HOH . J 6 HOH B 67 1119 1119 HOH HOH . J 6 HOH B 68 1120 1120 HOH HOH . J 6 HOH B 69 1122 1122 HOH HOH . J 6 HOH B 70 1124 1124 HOH HOH . J 6 HOH B 71 1126 1126 HOH HOH . J 6 HOH B 72 1127 1127 HOH HOH . J 6 HOH B 73 1128 1128 HOH HOH . J 6 HOH B 74 1130 1130 HOH HOH . J 6 HOH B 75 1131 1131 HOH HOH . J 6 HOH B 76 1134 1134 HOH HOH . J 6 HOH B 77 1136 1136 HOH HOH . J 6 HOH B 78 1137 1137 HOH HOH . J 6 HOH B 79 1138 1138 HOH HOH . J 6 HOH B 80 1144 1144 HOH HOH . J 6 HOH B 81 1146 1146 HOH HOH . J 6 HOH B 82 1147 1147 HOH HOH . J 6 HOH B 83 1148 1148 HOH HOH . J 6 HOH B 84 1150 1150 HOH HOH . J 6 HOH B 85 1153 1153 HOH HOH . J 6 HOH B 86 1154 1154 HOH HOH . J 6 HOH B 87 1155 1155 HOH HOH . J 6 HOH B 88 1156 1156 HOH HOH . J 6 HOH B 89 1158 1158 HOH HOH . J 6 HOH B 90 1159 1159 HOH HOH . J 6 HOH B 91 1160 1160 HOH HOH . J 6 HOH B 92 1163 1163 HOH HOH . J 6 HOH B 93 1164 1164 HOH HOH . J 6 HOH B 94 1166 1166 HOH HOH . J 6 HOH B 95 1168 1168 HOH HOH . J 6 HOH B 96 1169 1169 HOH HOH . J 6 HOH B 97 1171 1171 HOH HOH . J 6 HOH B 98 1173 1173 HOH HOH . J 6 HOH B 99 1174 1174 HOH HOH . J 6 HOH B 100 1175 1175 HOH HOH . J 6 HOH B 101 1178 1178 HOH HOH . J 6 HOH B 102 1179 1179 HOH HOH . J 6 HOH B 103 1180 1180 HOH HOH . J 6 HOH B 104 1181 1181 HOH HOH . J 6 HOH B 105 1182 1182 HOH HOH . J 6 HOH B 106 1183 1183 HOH HOH . J 6 HOH B 107 1184 1184 HOH HOH . J 6 HOH B 108 1190 1190 HOH HOH . J 6 HOH B 109 1193 1193 HOH HOH . J 6 HOH B 110 1194 1194 HOH HOH . J 6 HOH B 111 1197 1197 HOH HOH . J 6 HOH B 112 1198 1198 HOH HOH . J 6 HOH B 113 1201 1201 HOH HOH . J 6 HOH B 114 1202 1202 HOH HOH . J 6 HOH B 115 1203 1203 HOH HOH . J 6 HOH B 116 1205 1205 HOH HOH . J 6 HOH B 117 1209 1209 HOH HOH . J 6 HOH B 118 1210 1210 HOH HOH . J 6 HOH B 119 1211 1211 HOH HOH . J 6 HOH B 120 1213 1213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.235 _atom_site.Cartn_y 46.158 _atom_site.Cartn_z 1.388 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #