data_2F89 # _model_server_result.job_id ykMB7SDqNpnf1TLkTKxovA _model_server_result.datetime_utc '2024-11-05 23:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f89 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 2F89 # _exptl.entry_id 2F89 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F89 _cell.length_a 111.569 _cell.length_b 111.569 _cell.length_c 66.482 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F89 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.569 111.569 33.241 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 100 F ASP 103 1_555 C MN MN . F MN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc2 A OD2 ASP 100 F ASP 103 1_555 E MN MN . F MN 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 A OD2 ASP 104 F ASP 107 1_555 C MN MN . F MN 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc4 A OD2 ASP 104 F ASP 107 1_555 E MN MN . F MN 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OD2 ASP 240 F ASP 243 1_555 D MN MN . F MN 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 C MN MN . F MN 5001 1_555 F O2 210 . F 210 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 C MN MN . F MN 5001 1_555 F O9 210 . F 210 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc8 C MN MN . F MN 5001 1_555 G O HOH . F HOH 9005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc9 C MN MN . F MN 5001 1_555 G O HOH . F HOH 9028 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc10 D MN MN . F MN 5002 1_555 F O3 210 . F 210 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc11 D MN MN . F MN 5002 1_555 F O10 210 . F 210 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc12 D MN MN . F MN 5002 1_555 G O HOH . F HOH 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc13 D MN MN . F MN 5002 1_555 G O HOH . F HOH 9004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc14 D MN MN . F MN 5002 1_555 G O HOH . F HOH 9034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc15 E MN MN . F MN 5003 1_555 F O9 210 . F 210 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc16 E MN MN . F MN 5003 1_555 G O HOH . F HOH 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc17 E MN MN . F MN 5003 1_555 G O HOH . F HOH 9012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc18 E MN MN . F MN 5003 1_555 G O HOH . F HOH 9033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 283 n n P O2 PO4 sing 284 n n P O3 PO4 sing 285 n n P O4 PO4 sing 286 n n # _atom_sites.entry_id 2F89 _atom_sites.fract_transf_matrix[1][1] 0.008963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 F 1 1001 1001 PO4 PO4 . C 3 MN F 1 5001 5001 MN MN . D 3 MN F 1 5002 5002 MN MN . E 3 MN F 1 5003 5003 MN MN . F 4 210 F 1 9001 9001 210 210 . G 5 HOH F 1 9002 1 HOH HOH . G 5 HOH F 2 9003 2 HOH HOH . G 5 HOH F 3 9004 3 HOH HOH . G 5 HOH F 4 9005 4 HOH HOH . G 5 HOH F 5 9006 5 HOH HOH . G 5 HOH F 6 9007 6 HOH HOH . G 5 HOH F 7 9008 7 HOH HOH . G 5 HOH F 8 9009 8 HOH HOH . G 5 HOH F 9 9010 9 HOH HOH . G 5 HOH F 10 9011 10 HOH HOH . G 5 HOH F 11 9012 11 HOH HOH . G 5 HOH F 12 9013 12 HOH HOH . G 5 HOH F 13 9014 13 HOH HOH . G 5 HOH F 14 9015 14 HOH HOH . G 5 HOH F 15 9016 15 HOH HOH . G 5 HOH F 16 9017 16 HOH HOH . G 5 HOH F 17 9018 17 HOH HOH . G 5 HOH F 18 9019 18 HOH HOH . G 5 HOH F 19 9020 19 HOH HOH . G 5 HOH F 20 9021 20 HOH HOH . G 5 HOH F 21 9022 21 HOH HOH . G 5 HOH F 22 9023 22 HOH HOH . G 5 HOH F 23 9024 23 HOH HOH . G 5 HOH F 24 9025 24 HOH HOH . G 5 HOH F 25 9026 25 HOH HOH . G 5 HOH F 26 9027 26 HOH HOH . G 5 HOH F 27 9028 27 HOH HOH . G 5 HOH F 28 9029 28 HOH HOH . G 5 HOH F 29 9030 29 HOH HOH . G 5 HOH F 30 9031 30 HOH HOH . G 5 HOH F 31 9032 31 HOH HOH . G 5 HOH F 32 9033 32 HOH HOH . G 5 HOH F 33 9034 33 HOH HOH . G 5 HOH F 34 9035 34 HOH HOH . G 5 HOH F 35 9036 35 HOH HOH . G 5 HOH F 36 9037 36 HOH HOH . G 5 HOH F 37 9038 37 HOH HOH . G 5 HOH F 38 9039 38 HOH HOH . G 5 HOH F 39 9040 39 HOH HOH . G 5 HOH F 40 9041 40 HOH HOH . G 5 HOH F 41 9042 41 HOH HOH . G 5 HOH F 42 9043 42 HOH HOH . G 5 HOH F 43 9044 43 HOH HOH . G 5 HOH F 44 9045 44 HOH HOH . G 5 HOH F 45 9046 45 HOH HOH . G 5 HOH F 46 9047 46 HOH HOH . G 5 HOH F 47 9048 47 HOH HOH . G 5 HOH F 48 9049 48 HOH HOH . G 5 HOH F 49 9050 49 HOH HOH . G 5 HOH F 50 9051 50 HOH HOH . G 5 HOH F 51 9052 51 HOH HOH . G 5 HOH F 52 9053 52 HOH HOH . G 5 HOH F 53 9054 53 HOH HOH . G 5 HOH F 54 9055 54 HOH HOH . G 5 HOH F 55 9056 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 8.362 76.023 19.001 1 76.9 ? P PO4 1001 F 1 HETATM 2 O O1 PO4 . . . B 2 8.176 76.412 20.423 1 77.27 ? O1 PO4 1001 F 1 HETATM 3 O O2 PO4 . . . B 2 9.608 75.238 18.859 1 75.65 ? O2 PO4 1001 F 1 HETATM 4 O O3 PO4 . . . B 2 7.214 75.198 18.556 1 74.43 ? O3 PO4 1001 F 1 HETATM 5 O O4 PO4 . . . B 2 8.447 77.249 18.168 1 76.9 ? O4 PO4 1001 F 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #