data_2F8L # _model_server_result.job_id BncSVN_3U2EEyPzIza50GA _model_server_result.datetime_utc '2024-11-14 01:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 2F8L # _exptl.entry_id 2F8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F8L _cell.length_a 99.595 _cell.length_b 99.595 _cell.length_c 117.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 98 A GLY 86 1_555 A N MSE 99 A MSE 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 99 A MSE 87 1_555 A N LYS 100 A LYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 A C GLN 108 A GLN 96 1_555 A N MSE 109 A MSE 97 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C GLN 108 A GLN 96 1_555 A N MSE 109 A MSE 97 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale5 A C MSE 109 A MSE 97 1_555 A N THR 110 A THR 98 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 109 A MSE 97 1_555 A N THR 110 A THR 98 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 A C LYS 185 A LYS 173 1_555 A N MSE 186 A MSE 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C MSE 186 A MSE 174 1_555 A N THR 187 A THR 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale9 A C GLY 242 A GLY 230 1_555 A N MSE 243 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 243 A MSE 231 1_555 A N ARG 244 A ARG 232 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C MSE 243 A MSE 231 1_555 A N ARG 244 A ARG 232 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale12 A C ALA 259 A ALA 247 1_555 A N MSE 260 A MSE 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale13 A C MSE 260 A MSE 248 1_555 A N PHE 261 A PHE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 2F8L _atom_sites.fract_transf_matrix[1][1] 0.010041 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 333 1 CL CL . C 3 SO4 A 1 334 7 SO4 SO4 . D 4 SAM A 1 400 400 SAM SAM . E 5 GOL A 1 401 2 GOL GOL . F 5 GOL A 1 402 3 GOL GOL . G 5 GOL A 1 403 4 GOL GOL . H 5 GOL A 1 404 5 GOL GOL . I 5 GOL A 1 405 6 GOL GOL . J 6 HOH A 1 406 8 HOH HOH . J 6 HOH A 2 407 9 HOH HOH . J 6 HOH A 3 408 10 HOH HOH . J 6 HOH A 4 409 11 HOH HOH . J 6 HOH A 5 410 12 HOH HOH . J 6 HOH A 6 411 13 HOH HOH . J 6 HOH A 7 412 14 HOH HOH . J 6 HOH A 8 413 15 HOH HOH . J 6 HOH A 9 414 16 HOH HOH . J 6 HOH A 10 415 17 HOH HOH . J 6 HOH A 11 416 18 HOH HOH . J 6 HOH A 12 417 19 HOH HOH . J 6 HOH A 13 418 20 HOH HOH . J 6 HOH A 14 419 21 HOH HOH . J 6 HOH A 15 420 22 HOH HOH . J 6 HOH A 16 421 23 HOH HOH . J 6 HOH A 17 422 24 HOH HOH . J 6 HOH A 18 423 25 HOH HOH . J 6 HOH A 19 424 26 HOH HOH . J 6 HOH A 20 425 27 HOH HOH . J 6 HOH A 21 426 28 HOH HOH . J 6 HOH A 22 427 29 HOH HOH . J 6 HOH A 23 428 30 HOH HOH . J 6 HOH A 24 429 31 HOH HOH . J 6 HOH A 25 430 32 HOH HOH . J 6 HOH A 26 431 33 HOH HOH . J 6 HOH A 27 432 34 HOH HOH . J 6 HOH A 28 433 35 HOH HOH . J 6 HOH A 29 434 36 HOH HOH . J 6 HOH A 30 435 37 HOH HOH . J 6 HOH A 31 436 38 HOH HOH . J 6 HOH A 32 437 39 HOH HOH . J 6 HOH A 33 438 40 HOH HOH . J 6 HOH A 34 439 41 HOH HOH . J 6 HOH A 35 440 42 HOH HOH . J 6 HOH A 36 441 43 HOH HOH . J 6 HOH A 37 442 44 HOH HOH . J 6 HOH A 38 443 45 HOH HOH . J 6 HOH A 39 444 46 HOH HOH . J 6 HOH A 40 445 47 HOH HOH . J 6 HOH A 41 446 48 HOH HOH . J 6 HOH A 42 447 49 HOH HOH . J 6 HOH A 43 448 50 HOH HOH . J 6 HOH A 44 449 51 HOH HOH . J 6 HOH A 45 450 52 HOH HOH . J 6 HOH A 46 451 53 HOH HOH . J 6 HOH A 47 452 54 HOH HOH . J 6 HOH A 48 453 55 HOH HOH . J 6 HOH A 49 454 56 HOH HOH . J 6 HOH A 50 455 57 HOH HOH . J 6 HOH A 51 456 58 HOH HOH . J 6 HOH A 52 457 59 HOH HOH . J 6 HOH A 53 458 60 HOH HOH . J 6 HOH A 54 459 61 HOH HOH . J 6 HOH A 55 460 62 HOH HOH . J 6 HOH A 56 461 63 HOH HOH . J 6 HOH A 57 462 64 HOH HOH . J 6 HOH A 58 463 65 HOH HOH . J 6 HOH A 59 464 66 HOH HOH . J 6 HOH A 60 465 67 HOH HOH . J 6 HOH A 61 466 68 HOH HOH . J 6 HOH A 62 467 69 HOH HOH . J 6 HOH A 63 468 70 HOH HOH . J 6 HOH A 64 469 71 HOH HOH . J 6 HOH A 65 470 72 HOH HOH . J 6 HOH A 66 471 73 HOH HOH . J 6 HOH A 67 472 74 HOH HOH . J 6 HOH A 68 473 75 HOH HOH . J 6 HOH A 69 474 76 HOH HOH . J 6 HOH A 70 475 77 HOH HOH . J 6 HOH A 71 476 78 HOH HOH . J 6 HOH A 72 477 79 HOH HOH . J 6 HOH A 73 478 80 HOH HOH . J 6 HOH A 74 479 81 HOH HOH . J 6 HOH A 75 480 82 HOH HOH . J 6 HOH A 76 481 83 HOH HOH . J 6 HOH A 77 482 84 HOH HOH . J 6 HOH A 78 483 85 HOH HOH . J 6 HOH A 79 484 86 HOH HOH . J 6 HOH A 80 485 87 HOH HOH . J 6 HOH A 81 486 88 HOH HOH . J 6 HOH A 82 487 89 HOH HOH . J 6 HOH A 83 488 90 HOH HOH . J 6 HOH A 84 489 91 HOH HOH . J 6 HOH A 85 490 92 HOH HOH . J 6 HOH A 86 491 93 HOH HOH . J 6 HOH A 87 492 94 HOH HOH . J 6 HOH A 88 493 95 HOH HOH . J 6 HOH A 89 494 96 HOH HOH . J 6 HOH A 90 495 97 HOH HOH . J 6 HOH A 91 496 98 HOH HOH . J 6 HOH A 92 497 99 HOH HOH . J 6 HOH A 93 498 100 HOH HOH . J 6 HOH A 94 499 101 HOH HOH . J 6 HOH A 95 500 102 HOH HOH . J 6 HOH A 96 501 103 HOH HOH . J 6 HOH A 97 502 104 HOH HOH . J 6 HOH A 98 503 105 HOH HOH . J 6 HOH A 99 504 106 HOH HOH . J 6 HOH A 100 505 107 HOH HOH . J 6 HOH A 101 506 108 HOH HOH . J 6 HOH A 102 507 109 HOH HOH . J 6 HOH A 103 508 110 HOH HOH . J 6 HOH A 104 509 111 HOH HOH . J 6 HOH A 105 510 112 HOH HOH . J 6 HOH A 106 511 113 HOH HOH . J 6 HOH A 107 512 114 HOH HOH . J 6 HOH A 108 513 115 HOH HOH . J 6 HOH A 109 514 116 HOH HOH . J 6 HOH A 110 515 117 HOH HOH . J 6 HOH A 111 516 118 HOH HOH . J 6 HOH A 112 517 119 HOH HOH . J 6 HOH A 113 518 120 HOH HOH . J 6 HOH A 114 519 121 HOH HOH . J 6 HOH A 115 520 122 HOH HOH . J 6 HOH A 116 521 123 HOH HOH . J 6 HOH A 117 522 124 HOH HOH . J 6 HOH A 118 523 125 HOH HOH . J 6 HOH A 119 524 126 HOH HOH . J 6 HOH A 120 525 127 HOH HOH . J 6 HOH A 121 526 128 HOH HOH . J 6 HOH A 122 527 129 HOH HOH . J 6 HOH A 123 528 130 HOH HOH . J 6 HOH A 124 529 131 HOH HOH . J 6 HOH A 125 530 132 HOH HOH . J 6 HOH A 126 531 133 HOH HOH . J 6 HOH A 127 532 134 HOH HOH . J 6 HOH A 128 533 135 HOH HOH . J 6 HOH A 129 534 136 HOH HOH . J 6 HOH A 130 535 137 HOH HOH . J 6 HOH A 131 536 138 HOH HOH . J 6 HOH A 132 537 139 HOH HOH . J 6 HOH A 133 538 140 HOH HOH . J 6 HOH A 134 539 141 HOH HOH . J 6 HOH A 135 540 142 HOH HOH . J 6 HOH A 136 541 143 HOH HOH . J 6 HOH A 137 542 144 HOH HOH . J 6 HOH A 138 543 145 HOH HOH . J 6 HOH A 139 544 146 HOH HOH . J 6 HOH A 140 545 147 HOH HOH . J 6 HOH A 141 546 148 HOH HOH . J 6 HOH A 142 547 149 HOH HOH . J 6 HOH A 143 548 150 HOH HOH . J 6 HOH A 144 549 151 HOH HOH . J 6 HOH A 145 550 152 HOH HOH . J 6 HOH A 146 551 153 HOH HOH . J 6 HOH A 147 552 154 HOH HOH . J 6 HOH A 148 553 155 HOH HOH . J 6 HOH A 149 554 156 HOH HOH . J 6 HOH A 150 555 157 HOH HOH . J 6 HOH A 151 556 158 HOH HOH . J 6 HOH A 152 557 159 HOH HOH . J 6 HOH A 153 558 160 HOH HOH . J 6 HOH A 154 559 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 27.995 17.833 20.549 1 51.95 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . F 5 29.19 17.187 21.088 1 42.43 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . F 5 27.186 17.196 19.374 1 51.97 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . F 5 28.149 16.524 18.553 1 61.93 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . F 5 26.049 16.176 19.737 1 62.47 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . F 5 24.762 16.549 20.311 1 46.84 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #