data_2F8W
#
_model_server_result.job_id            oZM60F_Uz-LZaLT4XY4X1A 
_model_server_result.datetime_utc      '2025-01-11 12:48:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":13}' 
#
_entry.id    2F8W 
#
_exptl.entry_id    2F8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2F8W 
_cell.length_a            18.42 
_cell.length_b            30.74 
_cell.length_c            43.18 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DA 2 A DA 2 1_555 B N3 DT 5 B DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N6 DA 2 A DA 2 1_555 B O4 DT 5 B DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 2 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 5 1_555 B N6 DA 2 B DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 166 n n 
N1 HN11 SPM sing 167 n n 
N1 HN12 SPM sing 168 n n 
C2 C3 SPM sing 169 n n 
C2 H21 SPM sing 170 n n 
C2 H22 SPM sing 171 n n 
C3 C4 SPM sing 172 n n 
C3 H31 SPM sing 173 n n 
C3 H32 SPM sing 174 n n 
C4 N5 SPM sing 175 n n 
C4 H41 SPM sing 176 n n 
C4 H42 SPM sing 177 n n 
N5 C6 SPM sing 178 n n 
N5 HN5 SPM sing 179 n n 
C6 C7 SPM sing 180 n n 
C6 H61 SPM sing 181 n n 
C6 H62 SPM sing 182 n n 
C7 C8 SPM sing 183 n n 
C7 H71 SPM sing 184 n n 
C7 H72 SPM sing 185 n n 
C8 C9 SPM sing 186 n n 
C8 H81 SPM sing 187 n n 
C8 H82 SPM sing 188 n n 
C9 N10 SPM sing 189 n n 
C9 H91 SPM sing 190 n n 
C9 H92 SPM sing 191 n n 
N10 C11 SPM sing 192 n n 
N10 HN0 SPM sing 193 n n 
C11 C12 SPM sing 194 n n 
C11 H111 SPM sing 195 n n 
C11 H112 SPM sing 196 n n 
C12 C13 SPM sing 197 n n 
C12 H121 SPM sing 198 n n 
C12 H122 SPM sing 199 n n 
C13 N14 SPM sing 200 n n 
C13 H131 SPM sing 201 n n 
C13 H132 SPM sing 202 n n 
N14 HN41 SPM sing 203 n n 
N14 HN42 SPM sing 204 n n 
#
_atom_sites.entry_id                     2F8W 
_atom_sites.fract_transf_matrix[1][1]    0.05429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032531 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023159 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SPM A 1 13 13 SPM SP . 
D 3 13D B 1 85 85 13D Z5 . 
E 4 HOH A 1 14 14 HOH WAT . 
E 4 HOH A 2 15 15 HOH WAT . 
E 4 HOH A 3 17 17 HOH WAT . 
E 4 HOH A 4 18 18 HOH WAT . 
E 4 HOH A 5 19 19 HOH WAT . 
E 4 HOH A 6 21 21 HOH WAT . 
E 4 HOH A 7 26 26 HOH WAT . 
E 4 HOH A 8 28 28 HOH WAT . 
E 4 HOH A 9 29 29 HOH WAT . 
E 4 HOH A 10 30 30 HOH WAT . 
E 4 HOH A 11 33 33 HOH WAT . 
E 4 HOH A 12 34 34 HOH WAT . 
E 4 HOH A 13 35 35 HOH WAT . 
E 4 HOH A 14 36 36 HOH WAT . 
E 4 HOH A 15 37 37 HOH WAT . 
E 4 HOH A 16 39 39 HOH WAT . 
E 4 HOH A 17 41 41 HOH WAT . 
E 4 HOH A 18 42 42 HOH WAT . 
E 4 HOH A 19 45 45 HOH WAT . 
E 4 HOH A 20 46 46 HOH WAT . 
E 4 HOH A 21 50 50 HOH WAT . 
E 4 HOH A 22 51 51 HOH WAT . 
E 4 HOH A 23 52 52 HOH WAT . 
E 4 HOH A 24 54 54 HOH WAT . 
E 4 HOH A 25 56 56 HOH WAT . 
E 4 HOH A 26 59 59 HOH WAT . 
E 4 HOH A 27 63 63 HOH WAT . 
E 4 HOH A 28 64 64 HOH WAT . 
E 4 HOH A 29 65 65 HOH WAT . 
E 4 HOH A 30 71 71 HOH WAT . 
E 4 HOH A 31 73 73 HOH WAT . 
E 4 HOH A 32 74 74 HOH WAT . 
E 4 HOH A 33 75 75 HOH WAT . 
E 4 HOH A 34 77 77 HOH WAT . 
E 4 HOH A 35 78 78 HOH WAT . 
E 4 HOH A 36 79 79 HOH WAT . 
E 4 HOH A 37 80 80 HOH WAT . 
E 4 HOH A 38 81 81 HOH WAT . 
F 4 HOH B 1 16 16 HOH WAT . 
F 4 HOH B 2 20 20 HOH WAT . 
F 4 HOH B 3 22 22 HOH WAT . 
F 4 HOH B 4 23 23 HOH WAT . 
F 4 HOH B 5 24 24 HOH WAT . 
F 4 HOH B 6 25 25 HOH WAT . 
F 4 HOH B 7 27 27 HOH WAT . 
F 4 HOH B 8 31 31 HOH WAT . 
F 4 HOH B 9 32 32 HOH WAT . 
F 4 HOH B 10 38 38 HOH WAT . 
F 4 HOH B 11 40 40 HOH WAT . 
F 4 HOH B 12 43 43 HOH WAT . 
F 4 HOH B 13 44 44 HOH WAT . 
F 4 HOH B 14 47 47 HOH WAT . 
F 4 HOH B 15 48 48 HOH WAT . 
F 4 HOH B 16 49 49 HOH WAT . 
F 4 HOH B 17 53 53 HOH WAT . 
F 4 HOH B 18 55 55 HOH WAT . 
F 4 HOH B 19 57 57 HOH WAT . 
F 4 HOH B 20 58 58 HOH WAT . 
F 4 HOH B 21 60 60 HOH WAT . 
F 4 HOH B 22 61 61 HOH WAT . 
F 4 HOH B 23 62 62 HOH WAT . 
F 4 HOH B 24 66 66 HOH WAT . 
F 4 HOH B 25 67 67 HOH WAT . 
F 4 HOH B 26 68 68 HOH WAT . 
F 4 HOH B 27 69 69 HOH WAT . 
F 4 HOH B 28 70 70 HOH WAT . 
F 4 HOH B 29 72 72 HOH WAT . 
F 4 HOH B 30 76 76 HOH WAT . 
F 4 HOH B 31 82 82 HOH WAT . 
F 4 HOH B 32 83 83 HOH WAT . 
F 4 HOH B 33 84 84 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . C 2 24.198 18.643 27.429 1 10.61 ? N1 SPM 13 A 1 
HETATM 2 C C2 SPM . . . C 2 23.969 17.332 26.95 1 8.15 ? C2 SPM 13 A 1 
HETATM 3 C C3 SPM . . . C 2 22.902 17.025 25.923 1 7.32 ? C3 SPM 13 A 1 
HETATM 4 C C4 SPM . . . C 2 22.634 15.642 25.319 1 7.48 ? C4 SPM 13 A 1 
HETATM 5 N N5 SPM . . . C 2 23.607 15.155 24.425 1 5.05 ? N5 SPM 13 A 1 
HETATM 6 C C6 SPM . . . C 2 23.032 14.074 23.762 1 5.78 ? C6 SPM 13 A 1 
HETATM 7 C C7 SPM . . . C 2 24.065 13.287 22.995 1 9.39 ? C7 SPM 13 A 1 
HETATM 8 C C8 SPM . . . C 2 23.588 12.471 21.819 1 4.56 ? C8 SPM 13 A 1 
HETATM 9 C C9 SPM . . . C 2 24.628 11.756 20.979 1 16.02 ? C9 SPM 13 A 1 
HETATM 10 N N10 SPM . . . C 2 23.974 11.078 19.96 1 9.96 ? N10 SPM 13 A 1 
HETATM 11 C C11 SPM . . . C 2 24.913 10.415 19.171 1 19.79 ? C11 SPM 13 A 1 
HETATM 12 C C12 SPM . . . C 2 24.256 9.595 18.053 1 14.37 ? C12 SPM 13 A 1 
HETATM 13 C C13 SPM . . . C 2 25.005 9.474 16.725 1 29.15 ? C13 SPM 13 A 1 
HETATM 14 N N14 SPM . . . C 2 25.266 8.242 16.104 1 20.92 ? N14 SPM 13 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           14 
#