data_2F92 # _model_server_result.job_id 00dyQrM2wK-b8gh_L82Vtw _model_server_result.datetime_utc '2024-11-05 23:52:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":9001}' # _entry.id 2F92 # _exptl.entry_id 2F92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.064 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F92 _cell.length_a 111.503 _cell.length_b 111.503 _cell.length_c 70.222 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.503 111.503 35.111 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 100 F ASP 103 1_555 B ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc2 A OD2 ASP 100 F ASP 103 1_555 D ZN ZN . F ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc3 A OD2 ASP 104 F ASP 107 1_555 B ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc4 A OD2 ASP 104 F ASP 107 1_555 D ZN ZN . F ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 A OD2 ASP 240 F ASP 243 1_555 C ZN ZN . F ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc6 B ZN ZN . F ZN 1001 1_555 F O11 AHD . F AHD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc7 B ZN ZN . F ZN 1001 1_555 F O15 AHD . F AHD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc8 B ZN ZN . F ZN 1001 1_555 G O HOH . F HOH 9002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc9 B ZN ZN . F ZN 1001 1_555 G O HOH . F HOH 9008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc10 C ZN ZN . F ZN 1002 1_555 F O12 AHD . F AHD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc11 C ZN ZN . F ZN 1002 1_555 F O16 AHD . F AHD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 C ZN ZN . F ZN 1002 1_555 G O HOH . F HOH 9007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc13 C ZN ZN . F ZN 1002 1_555 G O HOH . F HOH 9018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc14 C ZN ZN . F ZN 1002 1_555 G O HOH . F HOH 9034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc15 D ZN ZN . F ZN 1003 1_555 F O11 AHD . F AHD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc16 D ZN ZN . F ZN 1003 1_555 G O HOH . F HOH 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc17 D ZN ZN . F ZN 1003 1_555 G O HOH . F HOH 9011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc18 D ZN ZN . F ZN 1003 1_555 G O HOH . F HOH 9027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C4 H9 N O7 P2 -4' _chem_comp.formula_weight 245.064 _chem_comp.id AHD _chem_comp.mon_nstd_flag . _chem_comp.name 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ALENDRONATE;FOSAMAX (TM)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 AHD sing 1 n n C2 C7 AHD sing 2 n n C2 H21 AHD sing 3 n n C2 H22 AHD sing 4 n n C3 N4 AHD sing 5 n n C3 H31 AHD sing 6 n n C3 H32 AHD sing 7 n n C7 C8 AHD sing 8 n n C7 H71 AHD sing 9 n n C7 H72 AHD sing 10 n n C8 P9 AHD sing 11 n n C8 P14 AHD sing 12 n n C8 O13 AHD sing 13 n n O12 P9 AHD sing 14 n n P9 O10 AHD sing 15 n n P9 O11 AHD doub 16 n n P14 O15 AHD sing 17 n n P14 O16 AHD sing 18 n n P14 O17 AHD doub 19 n n O13 H13 AHD sing 20 n n N4 HN41 AHD sing 21 n n N4 HN42 AHD sing 22 n n # _atom_sites.entry_id 2F92 _atom_sites.fract_transf_matrix[1][1] 0.008968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN F 1 1001 1001 ZN ZN . C 2 ZN F 1 1002 1002 ZN ZN . D 2 ZN F 1 1003 1003 ZN ZN . E 3 PO4 F 1 5001 5001 PO4 PO4 . F 4 AHD F 1 9001 9001 AHD AHD . G 5 HOH F 1 9002 1 HOH HOH . G 5 HOH F 2 9003 2 HOH HOH . G 5 HOH F 3 9004 3 HOH HOH . G 5 HOH F 4 9005 4 HOH HOH . G 5 HOH F 5 9006 5 HOH HOH . G 5 HOH F 6 9007 6 HOH HOH . G 5 HOH F 7 9008 7 HOH HOH . G 5 HOH F 8 9009 8 HOH HOH . G 5 HOH F 9 9010 9 HOH HOH . G 5 HOH F 10 9011 10 HOH HOH . G 5 HOH F 11 9012 11 HOH HOH . G 5 HOH F 12 9013 12 HOH HOH . G 5 HOH F 13 9014 13 HOH HOH . G 5 HOH F 14 9015 14 HOH HOH . G 5 HOH F 15 9016 15 HOH HOH . G 5 HOH F 16 9017 16 HOH HOH . G 5 HOH F 17 9018 17 HOH HOH . G 5 HOH F 18 9019 18 HOH HOH . G 5 HOH F 19 9020 19 HOH HOH . G 5 HOH F 20 9021 20 HOH HOH . G 5 HOH F 21 9022 21 HOH HOH . G 5 HOH F 22 9023 22 HOH HOH . G 5 HOH F 23 9024 23 HOH HOH . G 5 HOH F 24 9025 24 HOH HOH . G 5 HOH F 25 9026 25 HOH HOH . G 5 HOH F 26 9027 26 HOH HOH . G 5 HOH F 27 9028 27 HOH HOH . G 5 HOH F 28 9029 28 HOH HOH . G 5 HOH F 29 9030 29 HOH HOH . G 5 HOH F 30 9031 30 HOH HOH . G 5 HOH F 31 9032 31 HOH HOH . G 5 HOH F 32 9033 32 HOH HOH . G 5 HOH F 33 9034 33 HOH HOH . G 5 HOH F 34 9035 34 HOH HOH . G 5 HOH F 35 9036 35 HOH HOH . G 5 HOH F 36 9037 36 HOH HOH . G 5 HOH F 37 9038 37 HOH HOH . G 5 HOH F 38 9039 38 HOH HOH . G 5 HOH F 39 9040 39 HOH HOH . G 5 HOH F 40 9041 40 HOH HOH . G 5 HOH F 41 9042 41 HOH HOH . G 5 HOH F 42 9043 42 HOH HOH . G 5 HOH F 43 9044 43 HOH HOH . G 5 HOH F 44 9045 44 HOH HOH . G 5 HOH F 45 9046 45 HOH HOH . G 5 HOH F 46 9047 46 HOH HOH . G 5 HOH F 47 9048 47 HOH HOH . G 5 HOH F 48 9049 48 HOH HOH . G 5 HOH F 49 9050 49 HOH HOH . G 5 HOH F 50 9051 50 HOH HOH . G 5 HOH F 51 9052 51 HOH HOH . G 5 HOH F 52 9053 52 HOH HOH . G 5 HOH F 53 9054 53 HOH HOH . G 5 HOH F 54 9055 54 HOH HOH . G 5 HOH F 55 9056 55 HOH HOH . G 5 HOH F 56 9057 56 HOH HOH . G 5 HOH F 57 9058 57 HOH HOH . G 5 HOH F 58 9059 58 HOH HOH . G 5 HOH F 59 9060 59 HOH HOH . G 5 HOH F 60 9061 60 HOH HOH . G 5 HOH F 61 9062 61 HOH HOH . G 5 HOH F 62 9063 62 HOH HOH . G 5 HOH F 63 9064 63 HOH HOH . G 5 HOH F 64 9065 64 HOH HOH . G 5 HOH F 65 9066 65 HOH HOH . G 5 HOH F 66 9067 66 HOH HOH . G 5 HOH F 67 9068 67 HOH HOH . G 5 HOH F 68 9069 68 HOH HOH . G 5 HOH F 69 9070 69 HOH HOH . G 5 HOH F 70 9071 70 HOH HOH . G 5 HOH F 71 9072 71 HOH HOH . G 5 HOH F 72 9073 72 HOH HOH . G 5 HOH F 73 9074 73 HOH HOH . G 5 HOH F 74 9075 74 HOH HOH . G 5 HOH F 75 9076 75 HOH HOH . G 5 HOH F 76 9077 76 HOH HOH . G 5 HOH F 77 9078 77 HOH HOH . G 5 HOH F 78 9079 78 HOH HOH . G 5 HOH F 79 9080 79 HOH HOH . G 5 HOH F 80 9081 80 HOH HOH . G 5 HOH F 81 9082 81 HOH HOH . G 5 HOH F 82 9083 82 HOH HOH . G 5 HOH F 83 9084 83 HOH HOH . G 5 HOH F 84 9085 84 HOH HOH . G 5 HOH F 85 9086 85 HOH HOH . G 5 HOH F 86 9087 86 HOH HOH . G 5 HOH F 87 9088 87 HOH HOH . G 5 HOH F 88 9089 88 HOH HOH . G 5 HOH F 89 9090 89 HOH HOH . G 5 HOH F 90 9091 90 HOH HOH . G 5 HOH F 91 9092 91 HOH HOH . G 5 HOH F 92 9093 92 HOH HOH . G 5 HOH F 93 9094 93 HOH HOH . G 5 HOH F 94 9095 94 HOH HOH . G 5 HOH F 95 9096 95 HOH HOH . G 5 HOH F 96 9097 96 HOH HOH . G 5 HOH F 97 9098 97 HOH HOH . G 5 HOH F 98 9099 98 HOH HOH . G 5 HOH F 99 9100 99 HOH HOH . G 5 HOH F 100 9101 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AHD . . . F 4 15.579 79.96 25.635 1 39.13 ? C2 AHD 9001 F 1 HETATM 2 C C3 AHD . . . F 4 14.189 80.568 25.99 1 41.88 ? C3 AHD 9001 F 1 HETATM 3 C C7 AHD . . . F 4 15.479 78.525 25.043 1 38.43 ? C7 AHD 9001 F 1 HETATM 4 C C8 AHD . . . F 4 15.43 77.31 26.027 1 37.57 ? C8 AHD 9001 F 1 HETATM 5 O O12 AHD . . . F 4 16.398 76.025 28.242 1 31.29 ? O12 AHD 9001 F 1 HETATM 6 P P9 AHD . . . F 4 16.679 77.339 27.361 1 34.9 ? P9 AHD 9001 F 1 HETATM 7 O O10 AHD . . . F 4 16.207 78.503 28.345 1 33.08 ? O10 AHD 9001 F 1 HETATM 8 O O11 AHD . . . F 4 18.102 77.453 26.898 1 34.47 ? O11 AHD 9001 F 1 HETATM 9 P P14 AHD . . . F 4 15.703 75.803 25.032 1 41.24 ? P14 AHD 9001 F 1 HETATM 10 O O15 AHD . . . F 4 17.116 75.779 24.539 1 44.81 ? O15 AHD 9001 F 1 HETATM 11 O O16 AHD . . . F 4 15.299 74.564 25.947 1 24.67 ? O16 AHD 9001 F 1 HETATM 12 O O17 AHD . . . F 4 14.574 75.753 23.892 1 29.01 ? O17 AHD 9001 F 1 HETATM 13 O O13 AHD . . . F 4 14.128 77.239 26.624 1 41.58 ? O13 AHD 9001 F 1 HETATM 14 N N4 AHD . . . F 4 13.737 80.046 27.298 1 35.53 ? N4 AHD 9001 F 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #