data_2F95 # _model_server_result.job_id Dw-eOf6QHtXkf6Do6WprnQ _model_server_result.datetime_utc '2024-12-26 10:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 2F95 # _exptl.entry_id 2F95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F95 _cell.length_a 124.62 _cell.length_b 46.9 _cell.length_c 53.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.62 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 204 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.481 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2F95 _atom_sites.fract_transf_matrix[1][1] 0.008024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BOG A 1 300 300 BOG BOG . D 4 RET A 1 301 301 RET RET . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 10 HOH HOH . E 5 HOH A 11 312 11 HOH HOH . E 5 HOH A 12 313 12 HOH HOH . E 5 HOH A 13 314 13 HOH HOH . E 5 HOH A 14 315 14 HOH HOH . E 5 HOH A 15 316 15 HOH HOH . E 5 HOH A 16 317 16 HOH HOH . E 5 HOH A 17 318 17 HOH HOH . E 5 HOH A 18 319 18 HOH HOH . E 5 HOH A 19 320 19 HOH HOH . E 5 HOH A 20 321 20 HOH HOH . E 5 HOH A 21 322 21 HOH HOH . E 5 HOH A 22 323 22 HOH HOH . E 5 HOH A 23 324 23 HOH HOH . E 5 HOH A 24 325 24 HOH HOH . E 5 HOH A 25 326 25 HOH HOH . E 5 HOH A 26 327 26 HOH HOH . E 5 HOH A 27 328 27 HOH HOH . E 5 HOH A 28 329 28 HOH HOH . E 5 HOH A 29 330 29 HOH HOH . E 5 HOH A 30 331 30 HOH HOH . E 5 HOH A 31 332 31 HOH HOH . E 5 HOH A 32 333 32 HOH HOH . F 5 HOH B 1 167 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . A . C 3 87.8 13.576 54.484 0.5 62.58 ? C1 BOG 300 A 1 HETATM 2 O O1 BOG . A . C 3 86.518 12.954 54.442 0.5 59.7 ? O1 BOG 300 A 1 HETATM 3 C C2 BOG . A . C 3 88.174 13.848 55.96 0.5 63.79 ? C2 BOG 300 A 1 HETATM 4 O O2 BOG . A . C 3 87.182 14.698 56.534 0.5 66.25 ? O2 BOG 300 A 1 HETATM 5 C C3 BOG . A . C 3 89.572 14.514 56.018 0.5 64.74 ? C3 BOG 300 A 1 HETATM 6 O O3 BOG . A . C 3 89.917 14.783 57.366 0.5 64.88 ? O3 BOG 300 A 1 HETATM 7 C C4 BOG . A . C 3 90.588 13.544 55.38 0.5 64.63 ? C4 BOG 300 A 1 HETATM 8 O O4 BOG . A . C 3 91.901 14.118 55.432 0.5 64.43 ? O4 BOG 300 A 1 HETATM 9 C C5 BOG . A . C 3 90.17 13.262 53.881 0.5 64.91 ? C5 BOG 300 A 1 HETATM 10 O O5 BOG . A . C 3 88.824 12.704 53.875 0.5 64.16 ? O5 BOG 300 A 1 HETATM 11 C C6 BOG . A . C 3 91.113 12.256 53.192 0.5 65.15 ? C6 BOG 300 A 1 HETATM 12 O O6 BOG . A . C 3 92.471 12.688 53.184 0.5 68.68 ? O6 BOG 300 A 1 HETATM 13 C C1' BOG . A . C 3 86.05 12.691 53.134 0.5 54.01 ? C1' BOG 300 A 1 HETATM 14 C C2' BOG . A . C 3 85.063 13.779 52.846 0.5 51.39 ? C2' BOG 300 A 1 HETATM 15 C C3' BOG . A . C 3 84.735 13.764 51.398 0.5 49.12 ? C3' BOG 300 A 1 HETATM 16 C C4' BOG . A . C 3 83.765 14.854 51.08 0.5 49.14 ? C4' BOG 300 A 1 HETATM 17 C C5' BOG . A . C 3 83.446 14.837 49.617 0.5 46.38 ? C5' BOG 300 A 1 HETATM 18 C C6' BOG . A . C 3 82.469 15.936 49.261 0.5 43.61 ? C6' BOG 300 A 1 HETATM 19 C C7' BOG . A . C 3 82.214 15.87 47.791 0.5 44.73 ? C7' BOG 300 A 1 HETATM 20 C C8' BOG . A . C 3 81.243 16.91 47.412 0.5 44.49 ? C8' BOG 300 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #