data_2F95 # _model_server_result.job_id KozOUosVCZJ2UoUMUK9ThA _model_server_result.datetime_utc '2024-12-26 10:19:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2F95 # _exptl.entry_id 2F95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F95 _cell.length_a 124.62 _cell.length_b 46.9 _cell.length_c 53.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.62 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 204 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.481 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 312 n n C1 C6 RET sing 313 n n C1 C16 RET sing 314 n n C1 C17 RET sing 315 n n C2 C3 RET sing 316 n n C2 H21 RET sing 317 n n C2 H22 RET sing 318 n n C3 C4 RET sing 319 n n C3 H31 RET sing 320 n n C3 H32 RET sing 321 n n C4 C5 RET sing 322 n n C4 H41 RET sing 323 n n C4 H42 RET sing 324 n n C5 C6 RET doub 325 n n C5 C18 RET sing 326 n n C6 C7 RET sing 327 n n C7 C8 RET doub 328 e n C7 H7 RET sing 329 n n C8 C9 RET sing 330 n n C8 H8 RET sing 331 n n C9 C10 RET doub 332 e n C9 C19 RET sing 333 n n C10 C11 RET sing 334 n n C10 H10 RET sing 335 n n C11 C12 RET doub 336 e n C11 H11 RET sing 337 n n C12 C13 RET sing 338 n n C12 H12 RET sing 339 n n C13 C14 RET doub 340 e n C13 C20 RET sing 341 n n C14 C15 RET sing 342 n n C14 H14 RET sing 343 n n C15 O1 RET doub 344 n n C15 H15 RET sing 345 n n C16 H161 RET sing 346 n n C16 H162 RET sing 347 n n C16 H163 RET sing 348 n n C17 H171 RET sing 349 n n C17 H172 RET sing 350 n n C17 H173 RET sing 351 n n C18 H181 RET sing 352 n n C18 H182 RET sing 353 n n C18 H183 RET sing 354 n n C19 H191 RET sing 355 n n C19 H192 RET sing 356 n n C19 H193 RET sing 357 n n C20 H201 RET sing 358 n n C20 H202 RET sing 359 n n C20 H203 RET sing 360 n n # _atom_sites.entry_id 2F95 _atom_sites.fract_transf_matrix[1][1] 0.008024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BOG A 1 300 300 BOG BOG . D 4 RET A 1 301 301 RET RET . E 5 HOH A 1 302 1 HOH HOH . E 5 HOH A 2 303 2 HOH HOH . E 5 HOH A 3 304 3 HOH HOH . E 5 HOH A 4 305 4 HOH HOH . E 5 HOH A 5 306 5 HOH HOH . E 5 HOH A 6 307 6 HOH HOH . E 5 HOH A 7 308 7 HOH HOH . E 5 HOH A 8 309 8 HOH HOH . E 5 HOH A 9 310 9 HOH HOH . E 5 HOH A 10 311 10 HOH HOH . E 5 HOH A 11 312 11 HOH HOH . E 5 HOH A 12 313 12 HOH HOH . E 5 HOH A 13 314 13 HOH HOH . E 5 HOH A 14 315 14 HOH HOH . E 5 HOH A 15 316 15 HOH HOH . E 5 HOH A 16 317 16 HOH HOH . E 5 HOH A 17 318 17 HOH HOH . E 5 HOH A 18 319 18 HOH HOH . E 5 HOH A 19 320 19 HOH HOH . E 5 HOH A 20 321 20 HOH HOH . E 5 HOH A 21 322 21 HOH HOH . E 5 HOH A 22 323 22 HOH HOH . E 5 HOH A 23 324 23 HOH HOH . E 5 HOH A 24 325 24 HOH HOH . E 5 HOH A 25 326 25 HOH HOH . E 5 HOH A 26 327 26 HOH HOH . E 5 HOH A 27 328 27 HOH HOH . E 5 HOH A 28 329 28 HOH HOH . E 5 HOH A 29 330 29 HOH HOH . E 5 HOH A 30 331 30 HOH HOH . E 5 HOH A 31 332 31 HOH HOH . E 5 HOH A 32 333 32 HOH HOH . F 5 HOH B 1 167 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . D 4 85.653 0.215 26.46 0.5 14.9 ? C1 RET 301 A 1 HETATM 2 C C2 RET . A . D 4 86.116 -0.833 25.431 0.5 15.87 ? C2 RET 301 A 1 HETATM 3 C C3 RET . A . D 4 86.932 -1.952 25.983 0.5 17.19 ? C3 RET 301 A 1 HETATM 4 C C4 RET . A . D 4 86.267 -2.657 27.15 0.5 15.83 ? C4 RET 301 A 1 HETATM 5 C C5 RET . A . D 4 85.671 -1.707 28.21 0.5 16.61 ? C5 RET 301 A 1 HETATM 6 C C6 RET . A . D 4 85.441 -0.369 27.904 0.5 14.83 ? C6 RET 301 A 1 HETATM 7 C C7 RET . A . D 4 84.987 0.443 29.051 0.5 13.38 ? C7 RET 301 A 1 HETATM 8 C C8 RET . A . D 4 84.684 1.775 29.136 0.5 15.37 ? C8 RET 301 A 1 HETATM 9 C C9 RET . A . D 4 84.233 2.495 30.307 0.5 16.03 ? C9 RET 301 A 1 HETATM 10 C C10 RET . A . D 4 84.039 3.834 30.071 0.5 11.88 ? C10 RET 301 A 1 HETATM 11 C C11 RET . A . D 4 83.589 4.733 31.151 0.5 12.61 ? C11 RET 301 A 1 HETATM 12 C C12 RET . A . D 4 83.454 6.056 30.767 0.5 10.53 ? C12 RET 301 A 1 HETATM 13 C C13 RET . A . D 4 83.026 7.088 31.735 0.5 14.36 ? C13 RET 301 A 1 HETATM 14 C C14 RET . A . D 4 82.957 8.34 31.195 0.5 14.51 ? C14 RET 301 A 1 HETATM 15 C C15 RET . A . D 4 83.108 9.52 32.044 0.5 14.22 ? C15 RET 301 A 1 HETATM 16 C C16 RET . A . D 4 86.744 1.354 26.493 0.5 13.35 ? C16 RET 301 A 1 HETATM 17 C C17 RET . A . D 4 84.321 0.773 25.788 0.5 13.69 ? C17 RET 301 A 1 HETATM 18 C C18 RET . A . D 4 85.514 -2.452 29.501 0.5 11.47 ? C18 RET 301 A 1 HETATM 19 C C19 RET . A . D 4 84.027 1.801 31.626 0.5 14.12 ? C19 RET 301 A 1 HETATM 20 C C20 RET . A . D 4 82.723 6.755 33.158 0.5 15.61 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 532 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #