data_2F9B # _model_server_result.job_id jr_IHPWWxUTgxq3x4o-0Aw _model_server_result.datetime_utc '2024-11-22 08:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":258}' # _entry.id 2F9B # _exptl.entry_id 2F9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.376 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "{5-(5-AMINO-1H-PYRROLO[3,2-B]PYRIDIN-2-YL)-6-HYDROXY-3'-NITRO-BIPHENYL-3-YL]-ACETIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.17 _cell.angle_gamma 90 _cell.entry_id 2F9B _cell.length_a 78.07 _cell.length_b 68.94 _cell.length_c 78.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 50 L CYS 50 1_555 A SG CYS 61 L CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 55 L CYS 55 1_555 A SG CYS 70 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 72 L CYS 72 1_555 A SG CYS 81 L CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 91 L CYS 91 1_555 A SG CYS 102 L CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 98 L CYS 98 1_555 A SG CYS 112 L CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 114 L CYS 114 1_555 A SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 135 L CYS 135 1_555 B SG CYS 110 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 7 H CYS 22 1_555 B SG CYS 12 H CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 B SG CYS 26 H CYS 42 1_555 B SG CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf10 B SG CYS 158 H CYS 168 1_555 B SG CYS 177 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf11 B SG CYS 188 H CYS 191 1_555 B SG CYS 216 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf12 C SG CYS 48 T CYS 49 1_555 C SG CYS 56 T CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C21 H16 N4 O5' _chem_comp.formula_weight 404.376 _chem_comp.id N1H _chem_comp.mon_nstd_flag . _chem_comp.name "{5-(5-AMINO-1H-PYRROLO[3,2-B]PYRIDIN-2-YL)-6-HYDROXY-3'-NITRO-BIPHENYL-3-YL]-ACETIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 N1H doub 237 n y C1 N6 N1H sing 238 n y C1 N7 N1H sing 239 n n C2 C3 N1H sing 240 n y C2 H2 N1H sing 241 n n C3 C4 N1H doub 242 n y C3 H3 N1H sing 243 n n C4 C5 N1H sing 244 n y C4 N3 N1H sing 245 n y C5 N6 N1H doub 246 n y C5 CN4 N1H sing 247 n y N7 HN71 N1H sing 248 n n N7 HN72 N1H sing 249 n n N3 C8 N1H sing 250 n y N3 HN3 N1H sing 251 n n CN4 C8 N1H doub 252 n y CN4 HN4 N1H sing 253 n n C8 C1' N1H sing 254 n y C1' C2' N1H doub 255 n y C1' C6' N1H sing 256 n y C2' C3' N1H sing 257 n y C2' H2' N1H sing 258 n n C3' CV' N1H sing 259 n n C3' C4' N1H doub 260 n y CV' CW' N1H sing 261 n n CV' H311 N1H sing 262 n n CV' H312 N1H sing 263 n n CW' OX' N1H sing 264 n n CW' OY' N1H doub 265 n n OX' H33' N1H sing 266 n n C4' C5' N1H sing 267 n y C4' H4' N1H sing 268 n n C5' C6' N1H doub 269 n y C5' C1B N1H sing 270 n y C6' O6' N1H sing 271 n n O6' H6' N1H sing 272 n n C1B C2B N1H doub 273 n y C1B C6B N1H sing 274 n y C2B C3B N1H sing 275 n y C2B H2B N1H sing 276 n n C3B C4B N1H doub 277 n y C3B H3B N1H sing 278 n n C4B C5B N1H sing 279 n y C4B H4B N1H sing 280 n n C5B N5B N1H sing 281 n n C5B C6B N1H doub 282 n y N5B O51 N1H sing 283 n n N5B O52 N1H doub 284 n n C6B H6B N1H sing 285 n n # _atom_sites.entry_id 2F9B _atom_sites.fract_transf_matrix[1][1] 0.012809 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 N1H H 1 258 246 N1H N1H . E 5 HOH L 1 153 19 HOH HOH . E 5 HOH L 2 154 35 HOH HOH . E 5 HOH L 3 155 57 HOH HOH . E 5 HOH L 4 156 63 HOH HOH . E 5 HOH L 5 157 67 HOH HOH . E 5 HOH L 6 158 69 HOH HOH . E 5 HOH L 7 159 82 HOH HOH . E 5 HOH L 8 160 104 HOH HOH . E 5 HOH L 9 161 110 HOH HOH . E 5 HOH L 10 162 121 HOH HOH . E 5 HOH L 11 163 124 HOH HOH . E 5 HOH L 12 164 126 HOH HOH . E 5 HOH L 13 165 144 HOH HOH . E 5 HOH L 14 166 147 HOH HOH . E 5 HOH L 15 167 153 HOH HOH . E 5 HOH L 16 168 165 HOH HOH . E 5 HOH L 17 169 175 HOH HOH . E 5 HOH L 18 170 181 HOH HOH . E 5 HOH L 19 171 216 HOH HOH . E 5 HOH L 20 172 242 HOH HOH . E 5 HOH L 21 173 255 HOH HOH . E 5 HOH L 22 174 265 HOH HOH . E 5 HOH L 23 175 292 HOH HOH . E 5 HOH L 24 176 406 HOH HOH . E 5 HOH L 25 177 450 HOH HOH . F 5 HOH H 1 259 1 HOH HOH . F 5 HOH H 2 260 2 HOH HOH . F 5 HOH H 3 261 3 HOH HOH . F 5 HOH H 4 262 8 HOH HOH . F 5 HOH H 5 263 12 HOH HOH . F 5 HOH H 6 264 13 HOH HOH . F 5 HOH H 7 265 17 HOH HOH . F 5 HOH H 8 266 22 HOH HOH . F 5 HOH H 9 267 23 HOH HOH . F 5 HOH H 10 268 24 HOH HOH . F 5 HOH H 11 269 25 HOH HOH . F 5 HOH H 12 270 26 HOH HOH . F 5 HOH H 13 271 27 HOH HOH . F 5 HOH H 14 272 28 HOH HOH . F 5 HOH H 15 273 47 HOH HOH . F 5 HOH H 16 274 50 HOH HOH . F 5 HOH H 17 275 51 HOH HOH . F 5 HOH H 18 276 53 HOH HOH . F 5 HOH H 19 277 54 HOH HOH . F 5 HOH H 20 278 56 HOH HOH . F 5 HOH H 21 279 60 HOH HOH . F 5 HOH H 22 280 64 HOH HOH . F 5 HOH H 23 281 66 HOH HOH . F 5 HOH H 24 282 71 HOH HOH . F 5 HOH H 25 283 72 HOH HOH . F 5 HOH H 26 284 74 HOH HOH . F 5 HOH H 27 285 78 HOH HOH . F 5 HOH H 28 286 84 HOH HOH . F 5 HOH H 29 287 86 HOH HOH . F 5 HOH H 30 288 87 HOH HOH . F 5 HOH H 31 289 88 HOH HOH . F 5 HOH H 32 290 89 HOH HOH . F 5 HOH H 33 291 92 HOH HOH . F 5 HOH H 34 292 94 HOH HOH . F 5 HOH H 35 293 96 HOH HOH . F 5 HOH H 36 294 97 HOH HOH . F 5 HOH H 37 295 100 HOH HOH . F 5 HOH H 38 296 102 HOH HOH . F 5 HOH H 39 297 107 HOH HOH . F 5 HOH H 40 298 112 HOH HOH . F 5 HOH H 41 299 113 HOH HOH . F 5 HOH H 42 300 115 HOH HOH . F 5 HOH H 43 301 117 HOH HOH . F 5 HOH H 44 302 122 HOH HOH . F 5 HOH H 45 303 123 HOH HOH . F 5 HOH H 46 304 125 HOH HOH . F 5 HOH H 47 305 128 HOH HOH . F 5 HOH H 48 306 130 HOH HOH . F 5 HOH H 49 307 133 HOH HOH . F 5 HOH H 50 308 148 HOH HOH . F 5 HOH H 51 309 154 HOH HOH . F 5 HOH H 52 310 155 HOH HOH . F 5 HOH H 53 311 156 HOH HOH . F 5 HOH H 54 312 163 HOH HOH . F 5 HOH H 55 313 164 HOH HOH . F 5 HOH H 56 314 168 HOH HOH . F 5 HOH H 57 315 174 HOH HOH . F 5 HOH H 58 316 176 HOH HOH . F 5 HOH H 59 317 183 HOH HOH . F 5 HOH H 60 318 188 HOH HOH . F 5 HOH H 61 319 190 HOH HOH . F 5 HOH H 62 320 196 HOH HOH . F 5 HOH H 63 321 200 HOH HOH . F 5 HOH H 64 322 205 HOH HOH . F 5 HOH H 65 323 222 HOH HOH . F 5 HOH H 66 324 248 HOH HOH . F 5 HOH H 67 325 253 HOH HOH . F 5 HOH H 68 326 266 HOH HOH . F 5 HOH H 69 327 267 HOH HOH . F 5 HOH H 70 328 271 HOH HOH . F 5 HOH H 71 329 273 HOH HOH . F 5 HOH H 72 330 275 HOH HOH . F 5 HOH H 73 331 380 HOH HOH . F 5 HOH H 74 332 383 HOH HOH . F 5 HOH H 75 333 419 HOH HOH . F 5 HOH H 76 334 426 HOH HOH . F 5 HOH H 77 335 428 HOH HOH . F 5 HOH H 78 336 440 HOH HOH . F 5 HOH H 79 337 448 HOH HOH . F 5 HOH H 80 338 482 HOH HOH . F 5 HOH H 81 339 483 HOH HOH . F 5 HOH H 82 340 497 HOH HOH . F 5 HOH H 83 341 515 HOH HOH . F 5 HOH H 84 342 563 HOH HOH . F 5 HOH H 85 343 655 HOH HOH . G 5 HOH T 1 220 6 HOH HOH . G 5 HOH T 2 221 9 HOH HOH . G 5 HOH T 3 222 21 HOH HOH . G 5 HOH T 4 223 29 HOH HOH . G 5 HOH T 5 224 45 HOH HOH . G 5 HOH T 6 225 75 HOH HOH . G 5 HOH T 7 226 80 HOH HOH . G 5 HOH T 8 227 81 HOH HOH . G 5 HOH T 9 228 83 HOH HOH . G 5 HOH T 10 229 108 HOH HOH . G 5 HOH T 11 230 109 HOH HOH . G 5 HOH T 12 231 119 HOH HOH . G 5 HOH T 13 232 129 HOH HOH . G 5 HOH T 14 233 134 HOH HOH . G 5 HOH T 15 234 137 HOH HOH . G 5 HOH T 16 235 157 HOH HOH . G 5 HOH T 17 236 158 HOH HOH . G 5 HOH T 18 237 171 HOH HOH . G 5 HOH T 19 238 185 HOH HOH . G 5 HOH T 20 239 186 HOH HOH . G 5 HOH T 21 240 204 HOH HOH . G 5 HOH T 22 241 230 HOH HOH . G 5 HOH T 23 242 231 HOH HOH . G 5 HOH T 24 243 233 HOH HOH . G 5 HOH T 25 244 234 HOH HOH . G 5 HOH T 26 245 236 HOH HOH . G 5 HOH T 27 246 237 HOH HOH . G 5 HOH T 28 247 238 HOH HOH . G 5 HOH T 29 248 264 HOH HOH . G 5 HOH T 30 249 280 HOH HOH . G 5 HOH T 31 250 281 HOH HOH . G 5 HOH T 32 251 282 HOH HOH . G 5 HOH T 33 252 287 HOH HOH . G 5 HOH T 34 253 290 HOH HOH . G 5 HOH T 35 254 298 HOH HOH . G 5 HOH T 36 255 317 HOH HOH . G 5 HOH T 37 256 322 HOH HOH . G 5 HOH T 38 257 339 HOH HOH . G 5 HOH T 39 258 343 HOH HOH . G 5 HOH T 40 259 403 HOH HOH . G 5 HOH T 41 260 462 HOH HOH . G 5 HOH T 42 261 491 HOH HOH . G 5 HOH T 43 262 508 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N1H . . . D 4 47.328 -9.034 12.418 1 44.12 ? C1 N1H 258 H 1 HETATM 2 C C2 N1H . . . D 4 47.179 -7.705 11.987 1 48.06 ? C2 N1H 258 H 1 HETATM 3 C C3 N1H . . . D 4 48.151 -7.068 11.228 1 55.66 ? C3 N1H 258 H 1 HETATM 4 C C4 N1H . . . D 4 49.237 -7.829 10.941 1 50.73 ? C4 N1H 258 H 1 HETATM 5 C C5 N1H . . . D 4 49.41 -9.082 11.333 1 40.74 ? C5 N1H 258 H 1 HETATM 6 N N6 N1H . . . D 4 48.46 -9.654 12.057 1 37.29 ? N6 N1H 258 H 1 HETATM 7 N N7 N1H . . . D 4 46.394 -9.624 13.125 1 46.37 ? N7 N1H 258 H 1 HETATM 8 N N3 N1H . . . D 4 50.324 -7.533 10.238 1 48.35 ? N3 N1H 258 H 1 HETATM 9 C CN4 N1H . . . D 4 50.573 -9.578 10.902 1 39.61 ? CN4 N1H 258 H 1 HETATM 10 C C8 N1H . . . D 4 51.183 -8.552 10.171 1 43.99 ? C8 N1H 258 H 1 HETATM 11 C C1' N1H . . . D 4 52.38 -8.424 9.446 1 40.46 ? C1' N1H 258 H 1 HETATM 12 C C2' N1H . . . D 4 53.24 -9.513 9.295 1 43.47 ? C2' N1H 258 H 1 HETATM 13 C C3' N1H . . . D 4 54.438 -9.419 8.597 1 43.89 ? C3' N1H 258 H 1 HETATM 14 C CV' N1H . . . D 4 55.342 -10.647 8.454 0.3 44.86 ? CV' N1H 258 H 1 HETATM 15 C CW' N1H . . . D 4 55.984 -10.964 9.804 0.3 47.53 ? CW' N1H 258 H 1 HETATM 16 O OX' N1H . . . D 4 55.284 -11.57 10.6 0.3 50.88 ? OX' N1H 258 H 1 HETATM 17 O OY' N1H . . . D 4 57.133 -10.575 9.953 0.3 50.78 ? OY' N1H 258 H 1 HETATM 18 C C4' N1H . . . D 4 54.801 -8.212 8.033 1 38.97 ? C4' N1H 258 H 1 HETATM 19 C C5' N1H . . . D 4 53.989 -7.079 8.146 1 33.26 ? C5' N1H 258 H 1 HETATM 20 C C6' N1H . . . D 4 52.782 -7.223 8.855 1 29.76 ? C6' N1H 258 H 1 HETATM 21 O O6' N1H . . . D 4 51.917 -6.164 8.967 1 20.59 ? O6' N1H 258 H 1 HETATM 22 C C1B N1H . . . D 4 54.405 -5.873 7.576 1 29.28 ? C1B N1H 258 H 1 HETATM 23 C C2B N1H . . . D 4 53.49 -5.043 6.927 1 28.15 ? C2B N1H 258 H 1 HETATM 24 C C3B N1H . . . D 4 53.907 -3.858 6.342 1 29.17 ? C3B N1H 258 H 1 HETATM 25 C C4B N1H . . . D 4 55.244 -3.472 6.391 1 19.99 ? C4B N1H 258 H 1 HETATM 26 C C5B N1H . . . D 4 56.195 -4.248 7.025 1 18.7 ? C5B N1H 258 H 1 HETATM 27 N N5B N1H . . . D 4 57.454 -3.836 7.077 1 31.89 ? N5B N1H 258 H 1 HETATM 28 O O51 N1H . . . D 4 58.38 -4.312 8.107 1 34.86 ? O51 N1H 258 H 1 HETATM 29 O O52 N1H . . . D 4 58.034 -2.829 6.078 1 47.1 ? O52 N1H 258 H 1 HETATM 30 C C6B N1H . . . D 4 55.77 -5.448 7.615 1 26.11 ? C6B N1H 258 H 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #