data_2F9G
#
_model_server_result.job_id            72XIik3jmswf-GS9WMEj2A 
_model_server_result.datetime_utc      '2024-10-18 16:20:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2f9g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2F9G 
#
_exptl.entry_id    2F9G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2F9G 
_cell.length_a            56.811 
_cell.length_b            62.533 
_cell.length_c            86.008 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2F9G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 142 A ASN 142 1_555 B MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc2 A OD2 ASP 155 A ASP 155 1_555 B MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? 
metalc ? metalc3 C O3B ADP . A ADP 500 1_555 B MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc4 C O2A ADP . A ADP 500 1_555 B MG MG . A MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc5 B MG MG . A MG 600 1_555 D O HOH . A HOH 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc6 B MG MG . A MG 600 1_555 D O HOH . A HOH 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2F9G 
_atom_sites.fract_transf_matrix[1][1]    0.017602 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015992 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011627 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 600 600 MG MG2 . 
C 3 ADP A 1 500 500 ADP ADP . 
D 4 HOH A 1 601 1 HOH HOH . 
D 4 HOH A 2 602 2 HOH HOH . 
D 4 HOH A 3 603 3 HOH HOH . 
D 4 HOH A 4 604 4 HOH HOH . 
D 4 HOH A 5 605 5 HOH HOH . 
D 4 HOH A 6 606 6 HOH HOH . 
D 4 HOH A 7 607 7 HOH HOH . 
D 4 HOH A 8 608 8 HOH HOH . 
D 4 HOH A 9 609 9 HOH HOH . 
D 4 HOH A 10 610 10 HOH HOH . 
D 4 HOH A 11 611 11 HOH HOH . 
D 4 HOH A 12 612 12 HOH HOH . 
D 4 HOH A 13 613 13 HOH HOH . 
D 4 HOH A 14 614 14 HOH HOH . 
D 4 HOH A 15 615 15 HOH HOH . 
D 4 HOH A 16 616 16 HOH HOH . 
D 4 HOH A 17 617 17 HOH HOH . 
D 4 HOH A 18 618 18 HOH HOH . 
D 4 HOH A 19 619 19 HOH HOH . 
D 4 HOH A 20 620 20 HOH HOH . 
D 4 HOH A 21 621 21 HOH HOH . 
D 4 HOH A 22 622 22 HOH HOH . 
D 4 HOH A 23 623 23 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 25 HOH HOH . 
D 4 HOH A 26 626 26 HOH HOH . 
D 4 HOH A 27 627 27 HOH HOH . 
D 4 HOH A 28 628 28 HOH HOH . 
D 4 HOH A 29 629 29 HOH HOH . 
D 4 HOH A 30 630 30 HOH HOH . 
D 4 HOH A 31 631 31 HOH HOH . 
D 4 HOH A 32 632 32 HOH HOH . 
D 4 HOH A 33 633 33 HOH HOH . 
D 4 HOH A 34 634 34 HOH HOH . 
D 4 HOH A 35 635 35 HOH HOH . 
D 4 HOH A 36 636 36 HOH HOH . 
D 4 HOH A 37 637 37 HOH HOH . 
D 4 HOH A 38 638 38 HOH HOH . 
D 4 HOH A 39 639 39 HOH HOH . 
D 4 HOH A 40 640 40 HOH HOH . 
D 4 HOH A 41 641 41 HOH HOH . 
D 4 HOH A 42 642 42 HOH HOH . 
D 4 HOH A 43 643 43 HOH HOH . 
D 4 HOH A 44 644 44 HOH HOH . 
D 4 HOH A 45 645 45 HOH HOH . 
D 4 HOH A 46 646 46 HOH HOH . 
D 4 HOH A 47 647 47 HOH HOH . 
D 4 HOH A 48 648 48 HOH HOH . 
D 4 HOH A 49 649 49 HOH HOH . 
D 4 HOH A 50 650 50 HOH HOH . 
D 4 HOH A 51 651 51 HOH HOH . 
D 4 HOH A 52 652 52 HOH HOH . 
D 4 HOH A 53 653 53 HOH HOH . 
D 4 HOH A 54 654 54 HOH HOH . 
D 4 HOH A 55 655 55 HOH HOH . 
D 4 HOH A 56 656 56 HOH HOH . 
D 4 HOH A 57 657 57 HOH HOH . 
D 4 HOH A 58 658 58 HOH HOH . 
D 4 HOH A 59 659 59 HOH HOH . 
D 4 HOH A 60 660 60 HOH HOH . 
D 4 HOH A 61 661 61 HOH HOH . 
D 4 HOH A 62 662 62 HOH HOH . 
D 4 HOH A 63 663 63 HOH HOH . 
D 4 HOH A 64 664 64 HOH HOH . 
D 4 HOH A 65 665 65 HOH HOH . 
D 4 HOH A 66 666 66 HOH HOH . 
D 4 HOH A 67 667 67 HOH HOH . 
D 4 HOH A 68 668 68 HOH HOH . 
D 4 HOH A 69 669 69 HOH HOH . 
D 4 HOH A 70 670 70 HOH HOH . 
D 4 HOH A 71 671 71 HOH HOH . 
D 4 HOH A 72 672 72 HOH HOH . 
D 4 HOH A 73 673 73 HOH HOH . 
D 4 HOH A 74 674 74 HOH HOH . 
D 4 HOH A 75 675 75 HOH HOH . 
D 4 HOH A 76 676 76 HOH HOH . 
D 4 HOH A 77 677 77 HOH HOH . 
D 4 HOH A 78 678 78 HOH HOH . 
D 4 HOH A 79 679 79 HOH HOH . 
D 4 HOH A 80 680 80 HOH HOH . 
D 4 HOH A 81 681 81 HOH HOH . 
D 4 HOH A 82 682 82 HOH HOH . 
D 4 HOH A 83 683 83 HOH HOH . 
D 4 HOH A 84 684 84 HOH HOH . 
D 4 HOH A 85 685 85 HOH HOH . 
D 4 HOH A 86 686 86 HOH HOH . 
D 4 HOH A 87 687 87 HOH HOH . 
D 4 HOH A 88 688 88 HOH HOH . 
D 4 HOH A 89 689 89 HOH HOH . 
D 4 HOH A 90 690 90 HOH HOH . 
D 4 HOH A 91 691 91 HOH HOH . 
D 4 HOH A 92 692 92 HOH HOH . 
D 4 HOH A 93 693 93 HOH HOH . 
D 4 HOH A 94 694 94 HOH HOH . 
D 4 HOH A 95 695 95 HOH HOH . 
D 4 HOH A 96 696 96 HOH HOH . 
D 4 HOH A 97 697 97 HOH HOH . 
D 4 HOH A 98 698 98 HOH HOH . 
D 4 HOH A 99 699 99 HOH HOH . 
D 4 HOH A 100 700 100 HOH HOH . 
D 4 HOH A 101 701 101 HOH HOH . 
D 4 HOH A 102 702 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 35.49 4.863 34.109 1 30.19 ? PB ADP 500 A 1 
HETATM 2 O O1B ADP . . . C 3 36.633 5.755 34.268 1 31.29 ? O1B ADP 500 A 1 
HETATM 3 O O2B ADP . . . C 3 35.136 4.033 35.315 1 31.48 ? O2B ADP 500 A 1 
HETATM 4 O O3B ADP . . . C 3 34.211 5.574 33.597 1 29.04 ? O3B ADP 500 A 1 
HETATM 5 P PA ADP . . . C 3 35.21 3.339 31.734 1 25.17 ? PA ADP 500 A 1 
HETATM 6 O O1A ADP . . . C 3 35.529 1.901 31.583 1 22.45 ? O1A ADP 500 A 1 
HETATM 7 O O2A ADP . . . C 3 33.762 3.66 31.746 1 21.85 ? O2A ADP 500 A 1 
HETATM 8 O O3A ADP . . . C 3 35.906 3.776 33.045 1 27.78 ? O3A ADP 500 A 1 
HETATM 9 O O5' ADP . . . C 3 36.036 4.008 30.585 1 26.58 ? O5' ADP 500 A 1 
HETATM 10 C C5' ADP . . . C 3 36.03 5.446 30.367 1 24.99 ? C5' ADP 500 A 1 
HETATM 11 C C4' ADP . . . C 3 36.042 5.809 28.87 1 26.82 ? C4' ADP 500 A 1 
HETATM 12 O O4' ADP . . . C 3 37.173 5.157 28.235 1 25.53 ? O4' ADP 500 A 1 
HETATM 13 C C3' ADP . . . C 3 34.845 5.314 28.053 1 26.83 ? C3' ADP 500 A 1 
HETATM 14 O O3' ADP . . . C 3 33.781 6.251 28.216 1 31.2 ? O3' ADP 500 A 1 
HETATM 15 C C2' ADP . . . C 3 35.456 5.182 26.633 1 28.98 ? C2' ADP 500 A 1 
HETATM 16 O O2' ADP . . . C 3 35.468 6.387 25.883 1 27.06 ? O2' ADP 500 A 1 
HETATM 17 C C1' ADP . . . C 3 36.899 4.742 26.882 1 25.5 ? C1' ADP 500 A 1 
HETATM 18 N N9 ADP . . . C 3 37.023 3.257 26.793 1 23.81 ? N9 ADP 500 A 1 
HETATM 19 C C8 ADP . . . C 3 36.882 2.363 27.809 1 24.12 ? C8 ADP 500 A 1 
HETATM 20 N N7 ADP . . . C 3 37.06 1.106 27.432 1 22.45 ? N7 ADP 500 A 1 
HETATM 21 C C5 ADP . . . C 3 37.329 1.202 26.126 1 22.04 ? C5 ADP 500 A 1 
HETATM 22 C C6 ADP . . . C 3 37.621 0.192 25.173 1 20.99 ? C6 ADP 500 A 1 
HETATM 23 N N6 ADP . . . C 3 37.684 -1.064 25.42 1 19.16 ? N6 ADP 500 A 1 
HETATM 24 N N1 ADP . . . C 3 37.849 0.669 23.898 1 21.93 ? N1 ADP 500 A 1 
HETATM 25 C C2 ADP . . . C 3 37.81 2.004 23.556 1 19.86 ? C2 ADP 500 A 1 
HETATM 26 N N3 ADP . . . C 3 37.545 2.958 24.436 1 22.4 ? N3 ADP 500 A 1 
HETATM 27 C C4 ADP . . . C 3 37.311 2.521 25.696 1 23.72 ? C4 ADP 500 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#