data_2F9Q # _model_server_result.job_id KbP-sn4tpS1TnPqg1fucQg _model_server_result.datetime_utc '2024-10-14 15:20:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2f9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":600}' # _entry.id 2F9Q # _exptl.entry_id 2F9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2F9Q _cell.length_a 145.066 _cell.length_b 155.495 _cell.length_c 95.801 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2F9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 B,C,F,G,H,I,L,M 2 1 A,D,E,J,K,N 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_444 -x-1/2,y-1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -72.533 -77.7475 -95.801 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 421 A CYS 443 1_555 E FE HEM . A HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc2 B SG CYS 421 B CYS 443 1_555 H FE HEM . B HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 C SG CYS 421 C CYS 443 1_555 I FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 D SG CYS 421 D CYS 443 1_555 J FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2F9Q _atom_sites.fract_transf_matrix[1][1] 0.006893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 600 600 HEM HEM . F 3 SO4 B 1 2000 2000 SO4 SO4 . G 3 SO4 B 1 2001 2001 SO4 SO4 . H 2 HEM B 1 600 600 HEM HEM . I 2 HEM C 1 600 600 HEM HEM . J 2 HEM D 1 600 600 HEM HEM . K 4 HOH A 1 1002 1002 HOH HOH . K 4 HOH A 2 1004 1004 HOH HOH . K 4 HOH A 3 1008 1008 HOH HOH . K 4 HOH A 4 1010 1010 HOH HOH . L 4 HOH B 1 1000 1000 HOH HOH . L 4 HOH B 2 1003 1003 HOH HOH . L 4 HOH B 3 1009 1009 HOH HOH . M 4 HOH C 1 1001 1001 HOH HOH . M 4 HOH C 2 1006 1006 HOH HOH . N 4 HOH D 1 1005 1005 HOH HOH . N 4 HOH D 2 1007 1007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . H 2 -37.557 26.085 -48.586 1 51.78 ? CHA HEM 600 B 1 HETATM 2 C CHB HEM . . . H 2 -33.109 27.832 -49.429 1 51.53 ? CHB HEM 600 B 1 HETATM 3 C CHC HEM . . . H 2 -33.991 28.193 -54.134 1 53.04 ? CHC HEM 600 B 1 HETATM 4 C CHD HEM . . . H 2 -38.387 26.483 -53.34 1 53.27 ? CHD HEM 600 B 1 HETATM 5 C C1A HEM . . . H 2 -36.275 26.554 -48.397 1 51.44 ? C1A HEM 600 B 1 HETATM 6 C C2A HEM . . . H 2 -35.59 26.623 -47.132 1 51.43 ? C2A HEM 600 B 1 HETATM 7 C C3A HEM . . . H 2 -34.363 27.092 -47.362 1 50.35 ? C3A HEM 600 B 1 HETATM 8 C C4A HEM . . . H 2 -34.219 27.338 -48.778 1 50.22 ? C4A HEM 600 B 1 HETATM 9 C CMA HEM . . . H 2 -33.299 27.356 -46.292 1 50.96 ? CMA HEM 600 B 1 HETATM 10 C CAA HEM . . . H 2 -36.201 26.245 -45.768 1 52.29 ? CAA HEM 600 B 1 HETATM 11 C CBA HEM . . . H 2 -36.339 24.74 -45.574 1 55.22 ? CBA HEM 600 B 1 HETATM 12 C CGA HEM . . . H 2 -36.707 24.486 -44.133 1 55.8 ? CGA HEM 600 B 1 HETATM 13 O O1A HEM . . . H 2 -37.809 24.936 -43.708 1 55.75 ? O1A HEM 600 B 1 HETATM 14 O O2A HEM . . . H 2 -35.882 23.834 -43.426 1 54.98 ? O2A HEM 600 B 1 HETATM 15 C C1B HEM . . . H 2 -32.949 28.128 -50.785 1 52.26 ? C1B HEM 600 B 1 HETATM 16 C C2B HEM . . . H 2 -31.804 28.756 -51.44 1 53.26 ? C2B HEM 600 B 1 HETATM 17 C C3B HEM . . . H 2 -32.058 28.823 -52.754 1 52 ? C3B HEM 600 B 1 HETATM 18 C C4B HEM . . . H 2 -33.365 28.274 -52.931 1 52.13 ? C4B HEM 600 B 1 HETATM 19 C CMB HEM . . . H 2 -30.522 29.234 -50.726 1 52.69 ? CMB HEM 600 B 1 HETATM 20 C CAB HEM . . . H 2 -31.263 29.408 -53.968 1 49.95 ? CAB HEM 600 B 1 HETATM 21 C CBB HEM . . . H 2 -29.753 29.426 -53.751 1 48.89 ? CBB HEM 600 B 1 HETATM 22 C C1C HEM . . . H 2 -35.256 27.745 -54.311 1 53.93 ? C1C HEM 600 B 1 HETATM 23 C C2C HEM . . . H 2 -35.948 27.779 -55.557 1 54.98 ? C2C HEM 600 B 1 HETATM 24 C C3C HEM . . . H 2 -37.103 27.138 -55.355 1 54.77 ? C3C HEM 600 B 1 HETATM 25 C C4C HEM . . . H 2 -37.253 26.951 -53.937 1 53.7 ? C4C HEM 600 B 1 HETATM 26 C CMC HEM . . . H 2 -35.187 27.968 -56.9 1 55.06 ? CMC HEM 600 B 1 HETATM 27 C CAC HEM . . . H 2 -38.237 26.79 -56.347 1 54.31 ? CAC HEM 600 B 1 HETATM 28 C CBC HEM . . . H 2 -37.829 27.009 -57.808 1 56.63 ? CBC HEM 600 B 1 HETATM 29 C C1D HEM . . . H 2 -38.606 26.217 -52.036 1 52.22 ? C1D HEM 600 B 1 HETATM 30 C C2D HEM . . . H 2 -39.823 25.715 -51.486 1 51.03 ? C2D HEM 600 B 1 HETATM 31 C C3D HEM . . . H 2 -39.571 25.578 -49.981 1 52.27 ? C3D HEM 600 B 1 HETATM 32 C C4D HEM . . . H 2 -38.214 26.021 -49.795 1 53.1 ? C4D HEM 600 B 1 HETATM 33 C CMD HEM . . . H 2 -41.099 25.408 -52.247 1 50.94 ? CMD HEM 600 B 1 HETATM 34 C CAD HEM . . . H 2 -40.533 25.071 -48.881 1 52.88 ? CAD HEM 600 B 1 HETATM 35 C CBD HEM . . . H 2 -40.199 23.606 -48.581 1 53.74 ? CBD HEM 600 B 1 HETATM 36 C CGD HEM . . . H 2 -41.38 22.943 -47.926 1 54.33 ? CGD HEM 600 B 1 HETATM 37 O O1D HEM . . . H 2 -41.58 21.707 -48.139 1 53.99 ? O1D HEM 600 B 1 HETATM 38 O O2D HEM . . . H 2 -42.106 23.673 -47.196 1 54.52 ? O2D HEM 600 B 1 HETATM 39 N NA HEM . . . H 2 -35.398 26.988 -49.377 1 51.35 ? NA HEM 600 B 1 HETATM 40 N NB HEM . . . H 2 -33.876 27.861 -51.741 1 51.61 ? NB HEM 600 B 1 HETATM 41 N NC HEM . . . H 2 -36.108 27.332 -53.321 1 53.49 ? NC HEM 600 B 1 HETATM 42 N ND HEM . . . H 2 -37.677 26.387 -51.037 1 53.09 ? ND HEM 600 B 1 HETATM 43 FE FE HEM . . . H 2 -35.634 27.044 -51.319 1 54.04 ? FE HEM 600 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #