data_2FCP # _model_server_result.job_id CO9C1fZT4DLZWhRfICdRPA _model_server_result.datetime_utc '2024-11-23 06:14:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fcp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":806}' # _entry.id 2FCP # _exptl.entry_id 2FCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.381 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-OXO-PENTADECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FCP _cell.length_a 171.55 _cell.length_b 171.55 _cell.length_c 87.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GP4 GP1 C1 O1 . O6 HO6 . sing 2 ? 2 3 2 KDO GP4 C2 O2 . O6 HO6 . sing 3 ? 2 4 3 GMH KDO C1 O1 . O5 HO5 . sing 4 ? 2 5 4 GPH GMH C1 O1 . O3 HO3 . sing 5 ? 2 6 5 GLC GPH C1 O1 . O3 HO3 . sing 6 ? 2 7 6 GLA GLC C1 O1 . O3 HO3 . sing 7 ? 2 8 6 GLA GLC C1 O1 . O6 HO6 . sing 8 ? 2 9 3 KDO KDO C2 O2 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GP1 1 B 1 GP1 A 902 GP1 2 n B GP4 2 B 2 GP4 A 901 GP4 2 n B KDO 3 B 3 KDO A 1002 KDO 2 n B GMH 4 B 4 GMH A 1004 GMH 2 n B GPH 5 B 5 GPH A 1005 GPO 2 n B GLC 6 B 6 GLC A 1006 GLC 2 n B GLA 7 B 7 GLA A 1007 GLA 2 n B GLA 8 B 8 GLA A 1009 GLA 2 n B KDO 9 B 9 KDO A 1003 KDO # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 318 A CYS 318 1_555 A SG CYS 329 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 701 A CYS 701 1_555 A SG CYS 707 A CYS 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 E C1E LIL . A LIL 803 1_555 B O3 GP4 . B GP4 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 F C1E LIL . A LIL 804 1_555 B N2 GP4 . B GP4 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 G C2 AAE . A AAE 805 1_555 B O3 GP1 . B GP1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 H C1J LIM . A LIM 806 1_555 B N2 GP1 . B GP1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 I P1 EA2 . A EA2 807 1_555 B O4 GMH . B GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale6 B O6 GP1 . B GP1 1 1_555 B C1 GP4 . B GP4 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale7 B O6 GP4 . B GP4 2 1_555 B C2 KDO . B KDO 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale8 B O5 KDO . B KDO 3 1_555 B C1 GMH . B GMH 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale9 B O4 KDO . B KDO 3 1_555 B C2 KDO . B KDO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale10 B O3 GMH . B GMH 4 1_555 B C1 GPH . B GPH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 sing covale ? covale11 B O3 GPH . B GPH 5 1_555 B C1 GLC . B GLC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 sing covale ? covale12 B O3 GLC . B GLC 6 1_555 B C1 GLA . B GLA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale13 B O6 GLC . B GLC 6 1_555 B C1 GLA . B GLA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? metalc ? metalc1 A NZ LYS 439 A LYS 439 1_555 D NI NI . A NI 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 C NI NI . A NI 801 1_555 B O9 GPH . B GPH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc3 C NI NI . A NI 801 1_555 B O10 GPH . B GPH 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc4 D NI NI . A NI 802 1_555 B O7B GP1 . B GP1 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? # _chem_comp.formula 'C15 H28 O3' _chem_comp.formula_weight 256.381 _chem_comp.id LIM _chem_comp.mon_nstd_flag . _chem_comp.name '3-OXO-PENTADECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1J C2J LIM sing 510 n n C1J O1J LIM doub 511 n n C1J O3J LIM sing 512 n n C2J C3J LIM sing 513 n n C2J H2J1 LIM sing 514 n n C2J H2J2 LIM sing 515 n n C3J C4J LIM sing 516 n n C3J O2J LIM doub 517 n n C4J C5J LIM sing 518 n n C4J H4J1 LIM sing 519 n n C4J H4J2 LIM sing 520 n n C5J C6J LIM sing 521 n n C5J H5J1 LIM sing 522 n n C5J H5J2 LIM sing 523 n n C6J C7J LIM sing 524 n n C6J H6J1 LIM sing 525 n n C6J H6J2 LIM sing 526 n n C7J C8J LIM sing 527 n n C7J H7J1 LIM sing 528 n n C7J H7J2 LIM sing 529 n n C8J C9J LIM sing 530 n n C8J H8J1 LIM sing 531 n n C8J H8J2 LIM sing 532 n n C9J C0X LIM sing 533 n n C9J H9J1 LIM sing 534 n n C9J H9J2 LIM sing 535 n n C0X C1X LIM sing 536 n n C0X H0X1 LIM sing 537 n n C0X H0X2 LIM sing 538 n n C1X C2X LIM sing 539 n n C1X H1X1 LIM sing 540 n n C1X H1X2 LIM sing 541 n n C2X C3X LIM sing 542 n n C2X H2X1 LIM sing 543 n n C2X H2X2 LIM sing 544 n n C3X C4X LIM sing 545 n n C3X H3X1 LIM sing 546 n n C3X H3X2 LIM sing 547 n n C4X C5X LIM sing 548 n n C4X H4X1 LIM sing 549 n n C4X H4X2 LIM sing 550 n n C5X H5X1 LIM sing 551 n n C5X H5X2 LIM sing 552 n n C5X H5X3 LIM sing 553 n n O3J HO3 LIM sing 554 n n # _atom_sites.entry_id 2FCP _atom_sites.fract_transf_matrix[1][1] 0.005829 _atom_sites.fract_transf_matrix[1][2] 0.003365 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 801 1011 NI NI . D 3 NI A 1 802 1012 NI NI . E 4 LIL A 1 803 903 LIL LIL . F 4 LIL A 1 804 904 LIL LIL . G 5 AAE A 1 805 905 AAE AAE . H 6 LIM A 1 806 906 LIM LIM . I 7 EA2 A 1 807 1008 EA2 EA2 . J 8 HOH A 1 901 1030 HOH HOH . J 8 HOH A 2 902 1020 HOH HOH . J 8 HOH A 3 903 1025 HOH HOH . J 8 HOH A 4 904 1055 HOH HOH . J 8 HOH A 5 905 1023 HOH HOH . J 8 HOH A 6 906 1083 HOH HOH . J 8 HOH A 7 907 1040 HOH HOH . J 8 HOH A 8 908 1049 HOH HOH . J 8 HOH A 9 909 1098 HOH HOH . J 8 HOH A 10 910 1046 HOH HOH . J 8 HOH A 11 911 1101 HOH HOH . J 8 HOH A 12 912 1063 HOH HOH . J 8 HOH A 13 913 1096 HOH HOH . J 8 HOH A 14 914 1021 HOH HOH . J 8 HOH A 15 915 1038 HOH HOH . J 8 HOH A 16 916 1082 HOH HOH . J 8 HOH A 17 917 1019 HOH HOH . J 8 HOH A 18 918 1037 HOH HOH . J 8 HOH A 19 919 1100 HOH HOH . J 8 HOH A 20 920 1018 HOH HOH . J 8 HOH A 21 921 1084 HOH HOH . J 8 HOH A 22 922 1068 HOH HOH . J 8 HOH A 23 923 1103 HOH HOH . J 8 HOH A 24 924 1073 HOH HOH . J 8 HOH A 25 925 1036 HOH HOH . J 8 HOH A 26 926 1051 HOH HOH . J 8 HOH A 27 927 1066 HOH HOH . J 8 HOH A 28 928 1089 HOH HOH . J 8 HOH A 29 929 1048 HOH HOH . J 8 HOH A 30 930 1075 HOH HOH . J 8 HOH A 31 931 1081 HOH HOH . J 8 HOH A 32 932 1016 HOH HOH . J 8 HOH A 33 933 1111 HOH HOH . J 8 HOH A 34 934 1015 HOH HOH . J 8 HOH A 35 935 1065 HOH HOH . J 8 HOH A 36 936 1034 HOH HOH . J 8 HOH A 37 937 1031 HOH HOH . J 8 HOH A 38 938 1013 HOH HOH . J 8 HOH A 39 939 1097 HOH HOH . J 8 HOH A 40 940 1108 HOH HOH . J 8 HOH A 41 941 1094 HOH HOH . J 8 HOH A 42 942 1071 HOH HOH . J 8 HOH A 43 943 1054 HOH HOH . J 8 HOH A 44 944 1077 HOH HOH . J 8 HOH A 45 945 1085 HOH HOH . J 8 HOH A 46 946 1087 HOH HOH . J 8 HOH A 47 947 1107 HOH HOH . J 8 HOH A 48 948 1039 HOH HOH . J 8 HOH A 49 949 1070 HOH HOH . J 8 HOH A 50 950 1014 HOH HOH . J 8 HOH A 51 951 1028 HOH HOH . J 8 HOH A 52 952 1056 HOH HOH . J 8 HOH A 53 953 1052 HOH HOH . J 8 HOH A 54 954 1047 HOH HOH . J 8 HOH A 55 955 1027 HOH HOH . J 8 HOH A 56 956 1086 HOH HOH . J 8 HOH A 57 957 1064 HOH HOH . J 8 HOH A 58 958 1074 HOH HOH . J 8 HOH A 59 959 1062 HOH HOH . J 8 HOH A 60 960 1059 HOH HOH . J 8 HOH A 61 961 1050 HOH HOH . J 8 HOH A 62 962 1044 HOH HOH . J 8 HOH A 63 963 1032 HOH HOH . J 8 HOH A 64 964 1076 HOH HOH . J 8 HOH A 65 965 1024 HOH HOH . J 8 HOH A 66 966 1069 HOH HOH . J 8 HOH A 67 967 1029 HOH HOH . J 8 HOH A 68 968 1092 HOH HOH . J 8 HOH A 69 969 1080 HOH HOH . J 8 HOH A 70 970 1022 HOH HOH . J 8 HOH A 71 971 1099 HOH HOH . J 8 HOH A 72 972 1017 HOH HOH . J 8 HOH A 73 973 1060 HOH HOH . J 8 HOH A 74 974 1035 HOH HOH . J 8 HOH A 75 975 1090 HOH HOH . J 8 HOH A 76 976 1102 HOH HOH . J 8 HOH A 77 977 1105 HOH HOH . J 8 HOH A 78 978 1045 HOH HOH . J 8 HOH A 79 979 1026 HOH HOH . J 8 HOH A 80 980 1043 HOH HOH . J 8 HOH A 81 981 1095 HOH HOH . J 8 HOH A 82 982 1088 HOH HOH . J 8 HOH A 83 983 1079 HOH HOH . J 8 HOH A 84 984 1042 HOH HOH . J 8 HOH A 85 985 1104 HOH HOH . J 8 HOH A 86 986 1078 HOH HOH . J 8 HOH A 87 987 1106 HOH HOH . J 8 HOH A 88 988 1041 HOH HOH . J 8 HOH A 89 989 1067 HOH HOH . J 8 HOH A 90 990 1093 HOH HOH . J 8 HOH A 91 991 1057 HOH HOH . J 8 HOH A 92 992 1033 HOH HOH . J 8 HOH A 93 993 1091 HOH HOH . J 8 HOH A 94 994 1058 HOH HOH . J 8 HOH A 95 995 1061 HOH HOH . J 8 HOH A 96 996 1109 HOH HOH . J 8 HOH A 97 997 1110 HOH HOH . J 8 HOH A 98 998 1053 HOH HOH . J 8 HOH A 99 999 1072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1J LIM . . . H 6 53.222 76.963 59.742 1 70.76 ? C1J LIM 806 A 1 HETATM 2 C C2J LIM . . . H 6 52.558 77.854 60.758 1 69.21 ? C2J LIM 806 A 1 HETATM 3 C C3J LIM . . . H 6 52.952 79.317 60.599 1 73.79 ? C3J LIM 806 A 1 HETATM 4 C C4J LIM . . . H 6 52.1 80.191 61.518 1 61.66 ? C4J LIM 806 A 1 HETATM 5 C C5J LIM . . . H 6 52.193 81.673 61.218 1 57.46 ? C5J LIM 806 A 1 HETATM 6 C C6J LIM . . . H 6 51.66 81.963 59.825 1 65.97 ? C6J LIM 806 A 1 HETATM 7 C C7J LIM . . . H 6 51.501 83.455 59.544 1 66 ? C7J LIM 806 A 1 HETATM 8 C C8J LIM . . . H 6 50.872 83.637 58.168 1 66.49 ? C8J LIM 806 A 1 HETATM 9 C C9J LIM . . . H 6 50.339 85.044 57.938 1 57.02 ? C9J LIM 806 A 1 HETATM 10 C C0X LIM . . . H 6 49.519 85.084 56.655 1 77.33 ? C0X LIM 806 A 1 HETATM 11 C C1X LIM . . . H 6 48.767 86.389 56.49 1 69.87 ? C1X LIM 806 A 1 HETATM 12 C C2X LIM . . . H 6 49.683 87.53 56.102 1 71.45 ? C2X LIM 806 A 1 HETATM 13 C C3X LIM . . . H 6 48.916 88.842 55.994 1 82.74 ? C3X LIM 806 A 1 HETATM 14 C C4X LIM . . . H 6 47.664 88.708 55.131 1 80.06 ? C4X LIM 806 A 1 HETATM 15 C C5X LIM . . . H 6 47.998 88.272 53.717 1 97.14 ? C5X LIM 806 A 1 HETATM 16 O O1J LIM . . . H 6 53.465 77.388 58.609 1 78.62 ? O1J LIM 806 A 1 HETATM 17 O O2J LIM . . . H 6 54.339 79.474 60.926 1 86.63 ? O2J LIM 806 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 964 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 17 #