data_2FDH
#
_model_server_result.job_id            dCzmageY9uRTiVRtl1SMbQ 
_model_server_result.datetime_utc      '2024-12-04 11:12:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2fdh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    2FDH 
#
_exptl.entry_id    2FDH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2FDH 
_cell.length_a            40.68 
_cell.length_b            40.68 
_cell.length_c            118.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FDH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DT 1 B DT 501 1_555 A P MA7 2 B MA7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
covale ? covale2 A O3' MA7 2 B MA7 502 1_555 A P DT 3 B DT 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
metalc ? metalc1 B NE2 HIS 121 A HIS 131 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc2 B OD1 ASP 123 A ASP 133 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc3 B NE2 HIS 177 A HIS 187 1_555 C MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc4 C MN MN . A MN 300 1_555 D O2 AKG . A AKG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc5 C MN MN . A MN 300 1_555 D O5 AKG . A AKG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     2FDH 
_atom_sites.fract_transf_matrix[1][1]    0.024582 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008453 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 300 300 MN MN . 
D 4 AKG A 1 400 400 AKG AKG . 
E 5 HOH B 1 604 604 HOH HOH . 
E 5 HOH B 2 607 607 HOH HOH . 
E 5 HOH B 3 623 623 HOH HOH . 
E 5 HOH B 4 660 660 HOH HOH . 
E 5 HOH B 5 669 669 HOH HOH . 
E 5 HOH B 6 720 720 HOH HOH . 
E 5 HOH B 7 738 738 HOH HOH . 
E 5 HOH B 8 740 740 HOH HOH . 
E 5 HOH B 9 741 741 HOH HOH . 
E 5 HOH B 10 751 751 HOH HOH . 
E 5 HOH B 11 754 754 HOH HOH . 
E 5 HOH B 12 757 757 HOH HOH . 
E 5 HOH B 13 763 763 HOH HOH . 
E 5 HOH B 14 791 791 HOH HOH . 
E 5 HOH B 15 793 793 HOH HOH . 
E 5 HOH B 16 821 821 HOH HOH . 
F 5 HOH A 1 601 601 HOH HOH . 
F 5 HOH A 2 602 602 HOH HOH . 
F 5 HOH A 3 603 603 HOH HOH . 
F 5 HOH A 4 605 605 HOH HOH . 
F 5 HOH A 5 606 606 HOH HOH . 
F 5 HOH A 6 608 608 HOH HOH . 
F 5 HOH A 7 609 609 HOH HOH . 
F 5 HOH A 8 610 610 HOH HOH . 
F 5 HOH A 9 611 611 HOH HOH . 
F 5 HOH A 10 612 612 HOH HOH . 
F 5 HOH A 11 613 613 HOH HOH . 
F 5 HOH A 12 614 614 HOH HOH . 
F 5 HOH A 13 615 615 HOH HOH . 
F 5 HOH A 14 616 616 HOH HOH . 
F 5 HOH A 15 617 617 HOH HOH . 
F 5 HOH A 16 618 618 HOH HOH . 
F 5 HOH A 17 619 619 HOH HOH . 
F 5 HOH A 18 620 620 HOH HOH . 
F 5 HOH A 19 621 621 HOH HOH . 
F 5 HOH A 20 622 622 HOH HOH . 
F 5 HOH A 21 624 624 HOH HOH . 
F 5 HOH A 22 625 625 HOH HOH . 
F 5 HOH A 23 626 626 HOH HOH . 
F 5 HOH A 24 627 627 HOH HOH . 
F 5 HOH A 25 628 628 HOH HOH . 
F 5 HOH A 26 629 629 HOH HOH . 
F 5 HOH A 27 630 630 HOH HOH . 
F 5 HOH A 28 631 631 HOH HOH . 
F 5 HOH A 29 632 632 HOH HOH . 
F 5 HOH A 30 633 633 HOH HOH . 
F 5 HOH A 31 634 634 HOH HOH . 
F 5 HOH A 32 635 635 HOH HOH . 
F 5 HOH A 33 636 636 HOH HOH . 
F 5 HOH A 34 637 637 HOH HOH . 
F 5 HOH A 35 638 638 HOH HOH . 
F 5 HOH A 36 639 639 HOH HOH . 
F 5 HOH A 37 640 640 HOH HOH . 
F 5 HOH A 38 641 641 HOH HOH . 
F 5 HOH A 39 642 642 HOH HOH . 
F 5 HOH A 40 643 643 HOH HOH . 
F 5 HOH A 41 644 644 HOH HOH . 
F 5 HOH A 42 645 645 HOH HOH . 
F 5 HOH A 43 646 646 HOH HOH . 
F 5 HOH A 44 647 647 HOH HOH . 
F 5 HOH A 45 648 648 HOH HOH . 
F 5 HOH A 46 649 649 HOH HOH . 
F 5 HOH A 47 650 650 HOH HOH . 
F 5 HOH A 48 651 651 HOH HOH . 
F 5 HOH A 49 652 652 HOH HOH . 
F 5 HOH A 50 653 653 HOH HOH . 
F 5 HOH A 51 654 654 HOH HOH . 
F 5 HOH A 52 655 655 HOH HOH . 
F 5 HOH A 53 656 656 HOH HOH . 
F 5 HOH A 54 657 657 HOH HOH . 
F 5 HOH A 55 658 658 HOH HOH . 
F 5 HOH A 56 659 659 HOH HOH . 
F 5 HOH A 57 661 661 HOH HOH . 
F 5 HOH A 58 662 662 HOH HOH . 
F 5 HOH A 59 663 663 HOH HOH . 
F 5 HOH A 60 664 664 HOH HOH . 
F 5 HOH A 61 665 665 HOH HOH . 
F 5 HOH A 62 666 666 HOH HOH . 
F 5 HOH A 63 667 667 HOH HOH . 
F 5 HOH A 64 668 668 HOH HOH . 
F 5 HOH A 65 670 670 HOH HOH . 
F 5 HOH A 66 671 671 HOH HOH . 
F 5 HOH A 67 672 672 HOH HOH . 
F 5 HOH A 68 673 673 HOH HOH . 
F 5 HOH A 69 674 674 HOH HOH . 
F 5 HOH A 70 675 675 HOH HOH . 
F 5 HOH A 71 676 676 HOH HOH . 
F 5 HOH A 72 677 677 HOH HOH . 
F 5 HOH A 73 678 678 HOH HOH . 
F 5 HOH A 74 679 679 HOH HOH . 
F 5 HOH A 75 680 680 HOH HOH . 
F 5 HOH A 76 681 681 HOH HOH . 
F 5 HOH A 77 682 682 HOH HOH . 
F 5 HOH A 78 683 683 HOH HOH . 
F 5 HOH A 79 684 684 HOH HOH . 
F 5 HOH A 80 685 685 HOH HOH . 
F 5 HOH A 81 686 686 HOH HOH . 
F 5 HOH A 82 687 687 HOH HOH . 
F 5 HOH A 83 688 688 HOH HOH . 
F 5 HOH A 84 689 689 HOH HOH . 
F 5 HOH A 85 690 690 HOH HOH . 
F 5 HOH A 86 691 691 HOH HOH . 
F 5 HOH A 87 692 692 HOH HOH . 
F 5 HOH A 88 693 693 HOH HOH . 
F 5 HOH A 89 694 694 HOH HOH . 
F 5 HOH A 90 695 695 HOH HOH . 
F 5 HOH A 91 696 696 HOH HOH . 
F 5 HOH A 92 697 697 HOH HOH . 
F 5 HOH A 93 698 698 HOH HOH . 
F 5 HOH A 94 699 699 HOH HOH . 
F 5 HOH A 95 700 700 HOH HOH . 
F 5 HOH A 96 701 701 HOH HOH . 
F 5 HOH A 97 702 702 HOH HOH . 
F 5 HOH A 98 703 703 HOH HOH . 
F 5 HOH A 99 704 704 HOH HOH . 
F 5 HOH A 100 705 705 HOH HOH . 
F 5 HOH A 101 706 706 HOH HOH . 
F 5 HOH A 102 707 707 HOH HOH . 
F 5 HOH A 103 708 708 HOH HOH . 
F 5 HOH A 104 709 709 HOH HOH . 
F 5 HOH A 105 710 710 HOH HOH . 
F 5 HOH A 106 711 711 HOH HOH . 
F 5 HOH A 107 712 712 HOH HOH . 
F 5 HOH A 108 713 713 HOH HOH . 
F 5 HOH A 109 714 714 HOH HOH . 
F 5 HOH A 110 715 715 HOH HOH . 
F 5 HOH A 111 716 716 HOH HOH . 
F 5 HOH A 112 717 717 HOH HOH . 
F 5 HOH A 113 718 718 HOH HOH . 
F 5 HOH A 114 719 719 HOH HOH . 
F 5 HOH A 115 721 721 HOH HOH . 
F 5 HOH A 116 722 722 HOH HOH . 
F 5 HOH A 117 723 723 HOH HOH . 
F 5 HOH A 118 724 724 HOH HOH . 
F 5 HOH A 119 725 725 HOH HOH . 
F 5 HOH A 120 726 726 HOH HOH . 
F 5 HOH A 121 727 727 HOH HOH . 
F 5 HOH A 122 728 728 HOH HOH . 
F 5 HOH A 123 729 729 HOH HOH . 
F 5 HOH A 124 730 730 HOH HOH . 
F 5 HOH A 125 731 731 HOH HOH . 
F 5 HOH A 126 732 732 HOH HOH . 
F 5 HOH A 127 733 733 HOH HOH . 
F 5 HOH A 128 734 734 HOH HOH . 
F 5 HOH A 129 735 735 HOH HOH . 
F 5 HOH A 130 736 736 HOH HOH . 
F 5 HOH A 131 737 737 HOH HOH . 
F 5 HOH A 132 739 739 HOH HOH . 
F 5 HOH A 133 742 742 HOH HOH . 
F 5 HOH A 134 743 743 HOH HOH . 
F 5 HOH A 135 744 744 HOH HOH . 
F 5 HOH A 136 745 745 HOH HOH . 
F 5 HOH A 137 746 746 HOH HOH . 
F 5 HOH A 138 747 747 HOH HOH . 
F 5 HOH A 139 748 748 HOH HOH . 
F 5 HOH A 140 749 749 HOH HOH . 
F 5 HOH A 141 750 750 HOH HOH . 
F 5 HOH A 142 752 752 HOH HOH . 
F 5 HOH A 143 753 753 HOH HOH . 
F 5 HOH A 144 755 755 HOH HOH . 
F 5 HOH A 145 756 756 HOH HOH . 
F 5 HOH A 146 758 758 HOH HOH . 
F 5 HOH A 147 759 759 HOH HOH . 
F 5 HOH A 148 760 760 HOH HOH . 
F 5 HOH A 149 761 761 HOH HOH . 
F 5 HOH A 150 762 762 HOH HOH . 
F 5 HOH A 151 764 764 HOH HOH . 
F 5 HOH A 152 765 765 HOH HOH . 
F 5 HOH A 153 766 766 HOH HOH . 
F 5 HOH A 154 767 767 HOH HOH . 
F 5 HOH A 155 768 768 HOH HOH . 
F 5 HOH A 156 769 769 HOH HOH . 
F 5 HOH A 157 770 770 HOH HOH . 
F 5 HOH A 158 771 771 HOH HOH . 
F 5 HOH A 159 772 772 HOH HOH . 
F 5 HOH A 160 773 773 HOH HOH . 
F 5 HOH A 161 774 774 HOH HOH . 
F 5 HOH A 162 775 775 HOH HOH . 
F 5 HOH A 163 776 776 HOH HOH . 
F 5 HOH A 164 777 777 HOH HOH . 
F 5 HOH A 165 778 778 HOH HOH . 
F 5 HOH A 166 779 779 HOH HOH . 
F 5 HOH A 167 780 780 HOH HOH . 
F 5 HOH A 168 781 781 HOH HOH . 
F 5 HOH A 169 782 782 HOH HOH . 
F 5 HOH A 170 783 783 HOH HOH . 
F 5 HOH A 171 784 784 HOH HOH . 
F 5 HOH A 172 785 785 HOH HOH . 
F 5 HOH A 173 786 786 HOH HOH . 
F 5 HOH A 174 787 787 HOH HOH . 
F 5 HOH A 175 788 788 HOH HOH . 
F 5 HOH A 176 789 789 HOH HOH . 
F 5 HOH A 177 790 790 HOH HOH . 
F 5 HOH A 178 792 792 HOH HOH . 
F 5 HOH A 179 794 794 HOH HOH . 
F 5 HOH A 180 795 795 HOH HOH . 
F 5 HOH A 181 796 796 HOH HOH . 
F 5 HOH A 182 797 797 HOH HOH . 
F 5 HOH A 183 798 798 HOH HOH . 
F 5 HOH A 184 799 799 HOH HOH . 
F 5 HOH A 185 800 800 HOH HOH . 
F 5 HOH A 186 801 801 HOH HOH . 
F 5 HOH A 187 802 802 HOH HOH . 
F 5 HOH A 188 803 803 HOH HOH . 
F 5 HOH A 189 804 804 HOH HOH . 
F 5 HOH A 190 805 805 HOH HOH . 
F 5 HOH A 191 806 806 HOH HOH . 
F 5 HOH A 192 807 807 HOH HOH . 
F 5 HOH A 193 808 808 HOH HOH . 
F 5 HOH A 194 809 809 HOH HOH . 
F 5 HOH A 195 810 810 HOH HOH . 
F 5 HOH A 196 811 811 HOH HOH . 
F 5 HOH A 197 812 812 HOH HOH . 
F 5 HOH A 198 813 813 HOH HOH . 
F 5 HOH A 199 814 814 HOH HOH . 
F 5 HOH A 200 815 815 HOH HOH . 
F 5 HOH A 201 816 816 HOH HOH . 
F 5 HOH A 202 817 817 HOH HOH . 
F 5 HOH A 203 818 818 HOH HOH . 
F 5 HOH A 204 819 819 HOH HOH . 
F 5 HOH A 205 820 820 HOH HOH . 
F 5 HOH A 206 822 822 HOH HOH . 
F 5 HOH A 207 823 823 HOH HOH . 
F 5 HOH A 208 824 824 HOH HOH . 
F 5 HOH A 209 825 825 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . D 4 24.616 36.956 59.308 1 16.56 ? C1 AKG 400 A 1 
HETATM 2 O O1 AKG . . . D 4 25.422 36.05 59.354 1 17.6 ? O1 AKG 400 A 1 
HETATM 3 O O2 AKG . . . D 4 25.034 38.224 59.395 1 15.31 ? O2 AKG 400 A 1 
HETATM 4 C C2 AKG . . . D 4 23.156 36.675 59.152 1 18.17 ? C2 AKG 400 A 1 
HETATM 5 O O5 AKG . . . D 4 22.358 37.56 59.388 1 19.25 ? O5 AKG 400 A 1 
HETATM 6 C C3 AKG . . . D 4 22.682 35.295 58.725 1 15.43 ? C3 AKG 400 A 1 
HETATM 7 C C4 AKG . . . D 4 21.17 35.283 58.45 1 15.61 ? C4 AKG 400 A 1 
HETATM 8 C C5 AKG . . . D 4 20.72 33.923 57.967 1 15.66 ? C5 AKG 400 A 1 
HETATM 9 O O3 AKG . . . D 4 21.286 32.915 58.327 1 13.88 ? O3 AKG 400 A 1 
HETATM 10 O O4 AKG . . . D 4 19.722 33.831 57.086 1 16.95 ? O4 AKG 400 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#