data_2FDP # _model_server_result.job_id -LaiotBSGOAjZVsPfzyuyQ _model_server_result.datetime_utc '2025-02-05 09:58:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":386}' # _entry.id 2FDP # _exptl.entry_id 2FDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.702 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N1-((2S,3S,5R)-3-AMINO-6-(4-FLUOROPHENYLAMINO)-5-METHYL-6-OXO-1-PHENYLHEXAN-2-YL)-N3,N3-DIPROPYLISOPHTHALAMIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.21 _cell.angle_gamma 90 _cell.entry_id 2FDP _cell.length_a 81.189 _cell.length_b 102.188 _cell.length_c 99.53 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 158 A CYS 155 1_555 A SG CYS 362 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 220 A CYS 217 1_555 A SG CYS 385 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 272 A CYS 269 1_555 A SG CYS 322 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 B SG CYS 158 B CYS 155 1_555 B SG CYS 362 B CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 220 B CYS 217 1_555 B SG CYS 385 B CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 272 B CYS 269 1_555 B SG CYS 322 B CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 C SG CYS 158 C CYS 155 1_555 C SG CYS 362 C CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 C SG CYS 220 C CYS 217 1_555 C SG CYS 385 C CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 C SG CYS 272 C CYS 269 1_555 C SG CYS 322 C CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C33 H41 F N4 O3' _chem_comp.formula_weight 560.702 _chem_comp.id FRP _chem_comp.mon_nstd_flag . _chem_comp.name N1-((2S,3S,5R)-3-AMINO-6-(4-FLUOROPHENYLAMINO)-5-METHYL-6-OXO-1-PHENYLHEXAN-2-YL)-N3,N3-DIPROPYLISOPHTHALAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C30 FRP sing 83 n y C31 C32 FRP doub 84 n y C31 H31 FRP sing 85 n n C30 C29 FRP doub 86 n y C30 H30 FRP sing 87 n n C28 C33 FRP doub 88 n y C28 C29 FRP sing 89 n y C28 H28 FRP sing 90 n n C27 C26 FRP sing 91 n y C27 C22 FRP doub 92 n y C27 H27 FRP sing 93 n n C26 C25 FRP doub 94 n y C26 N3 FRP sing 95 n n C24 C23 FRP doub 96 n y C24 C25 FRP sing 97 n y C24 H24 FRP sing 98 n n C23 C22 FRP sing 99 n y C23 F1 FRP sing 100 n n C22 H22 FRP sing 101 n n C16 C15 FRP sing 102 n n C16 C18 FRP sing 103 n n C16 N4 FRP sing 104 n n C16 H16 FRP sing 105 n n C17 C15 FRP sing 106 n n C17 C32 FRP sing 107 n n C17 H171 FRP sing 108 n n C17 H172 FRP sing 109 n n C20 N3 FRP sing 110 n n C20 O3 FRP doub 111 n n C20 C19 FRP sing 112 n n C15 N2 FRP sing 113 n n C15 H15 FRP sing 114 n n C12 C5 FRP sing 115 n n C12 N2 FRP sing 116 n n C12 O2 FRP doub 117 n n C13 C11 FRP sing 118 n n C13 H131 FRP sing 119 n n C13 H132 FRP sing 120 n n C13 H133 FRP sing 121 n n C14 C10 FRP sing 122 n n C14 H141 FRP sing 123 n n C14 H142 FRP sing 124 n n C14 H143 FRP sing 125 n n C11 C8 FRP sing 126 n n C11 H111 FRP sing 127 n n C11 H112 FRP sing 128 n n C10 C9 FRP sing 129 n n C10 H101 FRP sing 130 n n C10 H102 FRP sing 131 n n C9 N1 FRP sing 132 n n C9 H91 FRP sing 133 n n C9 H92 FRP sing 134 n n C8 N1 FRP sing 135 n n C8 H81 FRP sing 136 n n C8 H82 FRP sing 137 n n C7 C3 FRP sing 138 n n C7 O1 FRP doub 139 n n C7 N1 FRP sing 140 n n C4 C5 FRP sing 141 n y C4 C3 FRP doub 142 n y C4 H4 FRP sing 143 n n C5 C6 FRP doub 144 n y C6 C1 FRP sing 145 n y C6 H6 FRP sing 146 n n C3 C2 FRP sing 147 n y C2 C1 FRP doub 148 n y C2 H2 FRP sing 149 n n C1 H1 FRP sing 150 n n C25 H25 FRP sing 151 n n N3 HN3 FRP sing 152 n n C19 C21 FRP sing 153 n n C19 C18 FRP sing 154 n n C19 H19 FRP sing 155 n n C21 H211 FRP sing 156 n n C21 H212 FRP sing 157 n n C21 H213 FRP sing 158 n n C18 H181 FRP sing 159 n n C18 H182 FRP sing 160 n n N4 HN41 FRP sing 161 n n N4 HN42 FRP sing 162 n n C32 C33 FRP sing 163 n y C33 H33 FRP sing 164 n n C29 H29 FRP sing 165 n n N2 HN2 FRP sing 166 n n # _atom_sites.entry_id 2FDP _atom_sites.fract_transf_matrix[1][1] 0.01232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FRP A 1 386 101 FRP FRP . E 2 FRP B 1 386 102 FRP FRP . F 2 FRP C 1 386 103 FRP FRP . G 3 HOH A 1 387 1 HOH HOH . G 3 HOH A 2 388 2 HOH HOH . G 3 HOH A 3 389 3 HOH HOH . G 3 HOH A 4 390 9 HOH HOH . G 3 HOH A 5 391 17 HOH HOH . G 3 HOH A 6 392 21 HOH HOH . G 3 HOH A 7 393 24 HOH HOH . G 3 HOH A 8 394 30 HOH HOH . G 3 HOH A 9 395 32 HOH HOH . G 3 HOH A 10 396 33 HOH HOH . G 3 HOH A 11 397 35 HOH HOH . G 3 HOH A 12 398 38 HOH HOH . G 3 HOH A 13 399 40 HOH HOH . G 3 HOH A 14 400 43 HOH HOH . G 3 HOH A 15 401 44 HOH HOH . G 3 HOH A 16 402 47 HOH HOH . G 3 HOH A 17 403 48 HOH HOH . G 3 HOH A 18 404 49 HOH HOH . G 3 HOH A 19 405 53 HOH HOH . G 3 HOH A 20 406 55 HOH HOH . G 3 HOH A 21 407 56 HOH HOH . G 3 HOH A 22 408 61 HOH HOH . G 3 HOH A 23 409 63 HOH HOH . G 3 HOH A 24 410 66 HOH HOH . G 3 HOH A 25 411 67 HOH HOH . G 3 HOH A 26 412 73 HOH HOH . G 3 HOH A 27 413 76 HOH HOH . G 3 HOH A 28 414 81 HOH HOH . G 3 HOH A 29 415 82 HOH HOH . G 3 HOH A 30 416 84 HOH HOH . G 3 HOH A 31 417 86 HOH HOH . G 3 HOH A 32 418 88 HOH HOH . G 3 HOH A 33 419 89 HOH HOH . G 3 HOH A 34 420 94 HOH HOH . G 3 HOH A 35 421 95 HOH HOH . G 3 HOH A 36 422 98 HOH HOH . H 3 HOH B 1 387 4 HOH HOH . H 3 HOH B 2 388 5 HOH HOH . H 3 HOH B 3 389 7 HOH HOH . H 3 HOH B 4 390 8 HOH HOH . H 3 HOH B 5 391 10 HOH HOH . H 3 HOH B 6 392 12 HOH HOH . H 3 HOH B 7 393 15 HOH HOH . H 3 HOH B 8 394 16 HOH HOH . H 3 HOH B 9 395 18 HOH HOH . H 3 HOH B 10 396 20 HOH HOH . H 3 HOH B 11 397 28 HOH HOH . H 3 HOH B 12 398 29 HOH HOH . H 3 HOH B 13 399 31 HOH HOH . H 3 HOH B 14 400 36 HOH HOH . H 3 HOH B 15 401 37 HOH HOH . H 3 HOH B 16 402 41 HOH HOH . H 3 HOH B 17 403 45 HOH HOH . H 3 HOH B 18 404 50 HOH HOH . H 3 HOH B 19 405 52 HOH HOH . H 3 HOH B 20 406 54 HOH HOH . H 3 HOH B 21 407 57 HOH HOH . H 3 HOH B 22 408 59 HOH HOH . H 3 HOH B 23 409 64 HOH HOH . H 3 HOH B 24 410 65 HOH HOH . H 3 HOH B 25 411 68 HOH HOH . H 3 HOH B 26 412 71 HOH HOH . H 3 HOH B 27 413 72 HOH HOH . H 3 HOH B 28 414 75 HOH HOH . H 3 HOH B 29 415 78 HOH HOH . H 3 HOH B 30 416 79 HOH HOH . H 3 HOH B 31 417 85 HOH HOH . H 3 HOH B 32 418 92 HOH HOH . H 3 HOH B 33 419 93 HOH HOH . H 3 HOH B 34 420 97 HOH HOH . H 3 HOH B 35 421 100 HOH HOH . I 3 HOH C 1 387 6 HOH HOH . I 3 HOH C 2 388 11 HOH HOH . I 3 HOH C 3 389 13 HOH HOH . I 3 HOH C 4 390 14 HOH HOH . I 3 HOH C 5 391 19 HOH HOH . I 3 HOH C 6 392 22 HOH HOH . I 3 HOH C 7 393 23 HOH HOH . I 3 HOH C 8 394 25 HOH HOH . I 3 HOH C 9 395 26 HOH HOH . I 3 HOH C 10 396 27 HOH HOH . I 3 HOH C 11 397 34 HOH HOH . I 3 HOH C 12 398 39 HOH HOH . I 3 HOH C 13 399 42 HOH HOH . I 3 HOH C 14 400 46 HOH HOH . I 3 HOH C 15 401 51 HOH HOH . I 3 HOH C 16 402 58 HOH HOH . I 3 HOH C 17 403 60 HOH HOH . I 3 HOH C 18 404 62 HOH HOH . I 3 HOH C 19 405 69 HOH HOH . I 3 HOH C 20 406 70 HOH HOH . I 3 HOH C 21 407 74 HOH HOH . I 3 HOH C 22 408 77 HOH HOH . I 3 HOH C 23 409 80 HOH HOH . I 3 HOH C 24 410 83 HOH HOH . I 3 HOH C 25 411 87 HOH HOH . I 3 HOH C 26 412 90 HOH HOH . I 3 HOH C 27 413 91 HOH HOH . I 3 HOH C 28 414 96 HOH HOH . I 3 HOH C 29 415 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C31 FRP . . . D 2 6.436 -3.443 47.633 1 10.74 ? C31 FRP 386 A 1 HETATM 2 C C30 FRP . . . D 2 5.203 -3.214 48.244 1 11.15 ? C30 FRP 386 A 1 HETATM 3 C C28 FRP . . . D 2 6.286 -3.124 50.396 1 11.96 ? C28 FRP 386 A 1 HETATM 4 C C27 FRP . . . D 2 14.732 -6.662 50.387 1 16.44 ? C27 FRP 386 A 1 HETATM 5 C C26 FRP . . . D 2 14.953 -6.492 49.019 1 15.16 ? C26 FRP 386 A 1 HETATM 6 C C24 FRP . . . D 2 15.869 -8.737 48.91 1 15.39 ? C24 FRP 386 A 1 HETATM 7 C C23 FRP . . . D 2 15.642 -8.899 50.273 1 16.8 ? C23 FRP 386 A 1 HETATM 8 C C22 FRP . . . D 2 15.076 -7.862 51.01 1 17.02 ? C22 FRP 386 A 1 HETATM 9 C C16 FRP . . . D 2 11.37 -3.139 47.428 1 12.07 ? C16 FRP 386 A 1 HETATM 10 C C17 FRP . . . D 2 8.924 -3.769 47.691 1 11.28 ? C17 FRP 386 A 1 HETATM 11 C C20 FRP . . . D 2 14.104 -4.223 48.831 1 12.72 ? C20 FRP 386 A 1 HETATM 12 C C15 FRP . . . D 2 10.119 -3.029 48.31 1 12.72 ? C15 FRP 386 A 1 HETATM 13 C C12 FRP . . . D 2 9.98 -0.861 49.478 1 13.28 ? C12 FRP 386 A 1 HETATM 14 C C13 FRP . . . D 2 4.843 3 50.984 1 19.82 ? C13 FRP 386 A 1 HETATM 15 C C14 FRP . . . D 2 4.977 0.606 45.341 1 21.75 ? C14 FRP 386 A 1 HETATM 16 C C11 FRP . . . D 2 4.157 1.9 50.202 1 19.33 ? C11 FRP 386 A 1 HETATM 17 C C10 FRP . . . D 2 4.059 0.751 46.536 1 20.51 ? C10 FRP 386 A 1 HETATM 18 C C9 FRP . . . D 2 4.271 2.073 47.278 1 20.2 ? C9 FRP 386 A 1 HETATM 19 C C8 FRP . . . D 2 5.14 1.081 49.364 1 18.96 ? C8 FRP 386 A 1 HETATM 20 C C7 FRP . . . D 2 6.62 2.368 47.844 1 16.52 ? C7 FRP 386 A 1 HETATM 21 C C4 FRP . . . D 2 8.356 0.852 48.726 1 14.44 ? C4 FRP 386 A 1 HETATM 22 C C5 FRP . . . D 2 9.481 0.554 49.483 1 13.5 ? C5 FRP 386 A 1 HETATM 23 C C6 FRP . . . D 2 10.091 1.561 50.234 1 13.34 ? C6 FRP 386 A 1 HETATM 24 C C3 FRP . . . D 2 7.826 2.137 48.707 1 15.29 ? C3 FRP 386 A 1 HETATM 25 C C2 FRP . . . D 2 8.439 3.152 49.441 1 14.23 ? C2 FRP 386 A 1 HETATM 26 C C1 FRP . . . D 2 9.57 2.858 50.208 1 13.59 ? C1 FRP 386 A 1 HETATM 27 F F1 FRP . . . D 2 15.974 -10.053 50.879 1 18.19 ? F1 FRP 386 A 1 HETATM 28 C C25 FRP . . . D 2 15.522 -7.539 48.292 1 15.08 ? C25 FRP 386 A 1 HETATM 29 N N3 FRP . . . D 2 14.646 -5.345 48.345 1 14.4 ? N3 FRP 386 A 1 HETATM 30 O O3 FRP . . . D 2 13.796 -4.046 49.996 1 12.76 ? O3 FRP 386 A 1 HETATM 31 C C19 FRP . . . D 2 13.894 -3.129 47.82 1 12.49 ? C19 FRP 386 A 1 HETATM 32 C C21 FRP . . . D 2 15.05 -2.136 47.91 1 11.41 ? C21 FRP 386 A 1 HETATM 33 C C18 FRP . . . D 2 12.566 -2.411 48.043 1 12.37 ? C18 FRP 386 A 1 HETATM 34 N N4 FRP . . . D 2 11.1 -2.63 46.098 1 11.52 ? N4 FRP 386 A 1 HETATM 35 C C32 FRP . . . D 2 7.601 -3.513 48.395 1 10.65 ? C32 FRP 386 A 1 HETATM 36 C C33 FRP . . . D 2 7.518 -3.359 49.783 1 11.4 ? C33 FRP 386 A 1 HETATM 37 C C29 FRP . . . D 2 5.125 -3.053 49.627 1 11.09 ? C29 FRP 386 A 1 HETATM 38 N N2 FRP . . . D 2 9.712 -1.626 48.413 1 12.1 ? N2 FRP 386 A 1 HETATM 39 O O2 FRP . . . D 2 10.6 -1.274 50.447 1 14.68 ? O2 FRP 386 A 1 HETATM 40 O O1 FRP . . . D 2 6.785 3.006 46.819 1 15.8 ? O1 FRP 386 A 1 HETATM 41 N N1 FRP . . . D 2 5.419 1.861 48.156 1 18.66 ? N1 FRP 386 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #