data_2FEO # _model_server_result.job_id yBFI5POxeTp-9SdvLxVdxQ _model_server_result.datetime_utc '2024-11-25 14:09:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2feo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":407}' # _entry.id 2FEO # _exptl.entry_id 2FEO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.197 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FEO _cell.length_a 72.949 _cell.length_b 72.949 _cell.length_c 76.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O7 P' _chem_comp.formula_weight 307.197 _chem_comp.id DC _chem_comp.mon_nstd_flag y _chem_comp.name "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OP3 P DC sing 83 n n OP3 HOP3 DC sing 84 n n P OP1 DC doub 85 n n P OP2 DC sing 86 n n P O5' DC sing 87 n n OP2 HOP2 DC sing 88 n n O5' C5' DC sing 89 n n C5' C4' DC sing 90 n n C5' H5' DC sing 91 n n C5' "H5''" DC sing 92 n n C4' O4' DC sing 93 n n C4' C3' DC sing 94 n n C4' H4' DC sing 95 n n O4' C1' DC sing 96 n n C3' O3' DC sing 97 n n C3' C2' DC sing 98 n n C3' H3' DC sing 99 n n O3' HO3' DC sing 100 n n C2' C1' DC sing 101 n n C2' H2' DC sing 102 n n C2' "H2''" DC sing 103 n n C1' N1 DC sing 104 n n C1' H1' DC sing 105 n n N1 C2 DC sing 106 n n N1 C6 DC sing 107 n n C2 O2 DC doub 108 n n C2 N3 DC sing 109 n n N3 C4 DC doub 110 n n C4 N4 DC sing 111 n n C4 C5 DC sing 112 n n N4 H41 DC sing 113 n n N4 H42 DC sing 114 n n C5 C6 DC doub 115 n n C5 H5 DC sing 116 n n C6 H6 DC sing 117 n n # _atom_sites.entry_id 2FEO _atom_sites.fract_transf_matrix[1][1] 0.013708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1001 SO4 SO4 . C 3 DC A 1 407 407 DC DC . D 4 HOH A 1 1002 7 HOH HOH . D 4 HOH A 2 1003 11 HOH HOH . D 4 HOH A 3 1004 13 HOH HOH . D 4 HOH A 4 1005 17 HOH HOH . D 4 HOH A 5 1006 18 HOH HOH . D 4 HOH A 6 1007 24 HOH HOH . D 4 HOH A 7 1008 29 HOH HOH . D 4 HOH A 8 1009 31 HOH HOH . D 4 HOH A 9 1010 32 HOH HOH . D 4 HOH A 10 1011 38 HOH HOH . D 4 HOH A 11 1012 41 HOH HOH . D 4 HOH A 12 1013 45 HOH HOH . D 4 HOH A 13 1014 48 HOH HOH . D 4 HOH A 14 1015 52 HOH HOH . D 4 HOH A 15 1016 53 HOH HOH . D 4 HOH A 16 1017 56 HOH HOH . D 4 HOH A 17 1018 57 HOH HOH . D 4 HOH A 18 1019 58 HOH HOH . D 4 HOH A 19 1020 59 HOH HOH . D 4 HOH A 20 1021 63 HOH HOH . D 4 HOH A 21 1022 70 HOH HOH . D 4 HOH A 22 1023 72 HOH HOH . D 4 HOH A 23 1024 73 HOH HOH . D 4 HOH A 24 1025 75 HOH HOH . D 4 HOH A 25 1026 80 HOH HOH . D 4 HOH A 26 1027 82 HOH HOH . D 4 HOH A 27 1028 88 HOH HOH . D 4 HOH A 28 1029 89 HOH HOH . D 4 HOH A 29 1030 92 HOH HOH . D 4 HOH A 30 1031 93 HOH HOH . D 4 HOH A 31 1032 96 HOH HOH . D 4 HOH A 32 1033 97 HOH HOH . D 4 HOH A 33 1034 99 HOH HOH . D 4 HOH A 34 1035 100 HOH HOH . D 4 HOH A 35 1036 102 HOH HOH . D 4 HOH A 36 1037 103 HOH HOH . D 4 HOH A 37 1038 107 HOH HOH . D 4 HOH A 38 1039 113 HOH HOH . D 4 HOH A 39 1040 116 HOH HOH . D 4 HOH A 40 1041 117 HOH HOH . D 4 HOH A 41 1042 119 HOH HOH . D 4 HOH A 42 1043 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OP3 DC . . . C 3 59.088 54.226 24.189 1 54.77 ? OP3 DC 407 A 1 HETATM 2 P P DC . . . C 3 58.813 54.86 22.756 1 54.53 ? P DC 407 A 1 HETATM 3 O OP1 DC . . . C 3 60.089 54.717 21.995 1 51.83 ? OP1 DC 407 A 1 HETATM 4 O OP2 DC . . . C 3 58.251 56.218 23.024 1 48.89 ? OP2 DC 407 A 1 HETATM 5 O O5' DC . . . C 3 57.687 53.967 22.06 1 50.02 ? O5' DC 407 A 1 HETATM 6 C C5' DC . . . C 3 56.301 54.165 22.36 1 48.54 ? C5' DC 407 A 1 HETATM 7 C C4' DC . . . C 3 55.527 52.873 22.155 1 49.51 ? C4' DC 407 A 1 HETATM 8 O O4' DC . . . C 3 54.794 52.925 20.898 1 48.19 ? O4' DC 407 A 1 HETATM 9 C C3' DC . . . C 3 56.338 51.585 22.057 1 48.17 ? C3' DC 407 A 1 HETATM 10 O O3' DC . . . C 3 55.568 50.453 22.501 1 46.53 ? O3' DC 407 A 1 HETATM 11 C C2' DC . . . C 3 56.707 51.527 20.569 1 47.36 ? C2' DC 407 A 1 HETATM 12 C C1' DC . . . C 3 55.512 52.22 19.9 1 45.65 ? C1' DC 407 A 1 HETATM 13 N N1 DC . . . C 3 55.864 53.175 18.82 1 46.98 ? N1 DC 407 A 1 HETATM 14 C C2 DC . . . C 3 55.474 52.873 17.501 1 47.74 ? C2 DC 407 A 1 HETATM 15 O O2 DC . . . C 3 54.878 51.799 17.279 1 51.1 ? O2 DC 407 A 1 HETATM 16 N N3 DC . . . C 3 55.77 53.752 16.502 1 45.93 ? N3 DC 407 A 1 HETATM 17 C C4 DC . . . C 3 56.444 54.884 16.781 1 43.74 ? C4 DC 407 A 1 HETATM 18 N N4 DC . . . C 3 56.737 55.707 15.765 1 43.17 ? N4 DC 407 A 1 HETATM 19 C C5 DC . . . C 3 56.854 55.216 18.111 1 40.08 ? C5 DC 407 A 1 HETATM 20 C C6 DC . . . C 3 56.539 54.343 19.094 1 45.11 ? C6 DC 407 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #