data_2FES # _model_server_result.job_id rvrabLBLorGFEWQDG7AuwQ _model_server_result.datetime_utc '2024-11-21 17:20:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 2FES # _exptl.entry_id 2FES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 463.594 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({5-[(E)-AMINO(IMINO)METHYL]THIEN-2-YL}METHYL)-L-PROLINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.01 _cell.angle_gamma 90 _cell.entry_id 2FES _cell.length_a 71.24 _cell.length_b 72.39 _cell.length_c 73.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FES _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 C C4 SIN 1 D SIN 55 1_555 C N TYR 2 D TYR 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C ILE 5 D ILE 59 1_555 C N HYP 6 D HYP 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 C C HYP 6 D HYP 60 1_555 C N GLU 7 D GLU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C GLU 8 D GLU 62 1_555 C N SMF 9 D SMF 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C SMF 9 D SMF 63 1_555 C N ALC 10 D ALC 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C ALC 10 D ALC 64 1_555 C N GLN 11 D GLN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C22 H33 N5 O4 S' _chem_comp.formula_weight 463.594 _chem_comp.id 3SP _chem_comp.mon_nstd_flag . _chem_comp.name N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({5-[(E)-AMINO(IMINO)METHYL]THIEN-2-YL}METHYL)-L-PROLINAMIDE _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3SP doub 1 n y C1 S5 3SP sing 2 n y C1 C6 3SP sing 3 n n C2 C3 3SP sing 4 n y C2 H2 3SP sing 5 n n C3 C4 3SP doub 6 n y C3 H3 3SP sing 7 n n C4 S5 3SP sing 8 n y C4 C9 3SP sing 9 n n C6 N7 3SP doub 10 n n C6 N8 3SP sing 11 n n N7 HN7 3SP sing 12 n n N8 HN81 3SP sing 13 n n N8 HN82 3SP sing 14 n n C9 N10 3SP sing 15 n n C9 H91 3SP sing 16 n n C9 H92 3SP sing 17 n n N10 C11 3SP sing 18 n n N10 HN10 3SP sing 19 n n C11 O12 3SP doub 20 n n C11 C13 3SP sing 21 n n C13 C14 3SP sing 22 n n C13 N17 3SP sing 23 n n C13 H13 3SP sing 24 n n C14 C15 3SP sing 25 n n C14 H141 3SP sing 26 n n C14 H142 3SP sing 27 n n C15 C16 3SP sing 28 n n C15 H151 3SP sing 29 n n C15 H152 3SP sing 30 n n C16 N17 3SP sing 31 n n C16 H161 3SP sing 32 n n C16 H162 3SP sing 33 n n N17 C18 3SP sing 34 n n C18 O19 3SP doub 35 n n C18 C20 3SP sing 36 n n C20 N21 3SP sing 37 n n C20 C24 3SP sing 38 n n C20 H20 3SP sing 39 n n N21 C22 3SP sing 40 n n N21 HN21 3SP sing 41 n n C22 C23 3SP sing 42 n n C22 H221 3SP sing 43 n n C22 H222 3SP sing 44 n n C23 O31 3SP sing 45 n n C23 O32 3SP doub 46 n n C24 C25 3SP sing 47 n n C24 H241 3SP sing 48 n n C24 H242 3SP sing 49 n n C25 C26 3SP sing 50 n n C25 C30 3SP sing 51 n n C25 H25 3SP sing 52 n n C26 C27 3SP sing 53 n n C26 H261 3SP sing 54 n n C26 H262 3SP sing 55 n n C27 C28 3SP sing 56 n n C27 H271 3SP sing 57 n n C27 H272 3SP sing 58 n n C28 C29 3SP sing 59 n n C28 H281 3SP sing 60 n n C28 H282 3SP sing 61 n n C29 C30 3SP sing 62 n n C29 H291 3SP sing 63 n n C29 H292 3SP sing 64 n n C30 H301 3SP sing 65 n n C30 H302 3SP sing 66 n n O31 HO31 3SP sing 67 n n # _atom_sites.entry_id 2FES _atom_sites.fract_transf_matrix[1][1] 0.014037 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 3SP H 1 1 1 3SP INH . E 5 HOH L 1 18 4 HOH HOH . E 5 HOH L 2 19 6 HOH HOH . E 5 HOH L 3 20 20 HOH HOH . E 5 HOH L 4 21 21 HOH HOH . E 5 HOH L 5 22 22 HOH HOH . E 5 HOH L 6 23 23 HOH HOH . E 5 HOH L 7 24 156 HOH HOH . E 5 HOH L 8 25 157 HOH HOH . F 5 HOH H 1 248 7 HOH HOH . F 5 HOH H 2 249 8 HOH HOH . F 5 HOH H 3 250 9 HOH HOH . F 5 HOH H 4 251 10 HOH HOH . F 5 HOH H 5 252 11 HOH HOH . F 5 HOH H 6 253 12 HOH HOH . F 5 HOH H 7 254 13 HOH HOH . F 5 HOH H 8 255 14 HOH HOH . F 5 HOH H 9 256 15 HOH HOH . F 5 HOH H 10 257 16 HOH HOH . F 5 HOH H 11 258 19 HOH HOH . F 5 HOH H 12 259 24 HOH HOH . F 5 HOH H 13 260 25 HOH HOH . F 5 HOH H 14 261 29 HOH HOH . F 5 HOH H 15 262 32 HOH HOH . F 5 HOH H 16 263 33 HOH HOH . F 5 HOH H 17 264 37 HOH HOH . F 5 HOH H 18 265 38 HOH HOH . F 5 HOH H 19 266 40 HOH HOH . F 5 HOH H 20 267 42 HOH HOH . F 5 HOH H 21 268 43 HOH HOH . F 5 HOH H 22 269 47 HOH HOH . F 5 HOH H 23 270 48 HOH HOH . F 5 HOH H 24 271 49 HOH HOH . F 5 HOH H 25 272 50 HOH HOH . F 5 HOH H 26 273 51 HOH HOH . F 5 HOH H 27 274 52 HOH HOH . F 5 HOH H 28 275 53 HOH HOH . F 5 HOH H 29 276 54 HOH HOH . F 5 HOH H 30 277 55 HOH HOH . F 5 HOH H 31 278 56 HOH HOH . F 5 HOH H 32 279 57 HOH HOH . F 5 HOH H 33 280 58 HOH HOH . F 5 HOH H 34 281 62 HOH HOH . F 5 HOH H 35 282 63 HOH HOH . F 5 HOH H 36 283 64 HOH HOH . F 5 HOH H 37 284 67 HOH HOH . F 5 HOH H 38 285 69 HOH HOH . F 5 HOH H 39 286 71 HOH HOH . F 5 HOH H 40 287 72 HOH HOH . F 5 HOH H 41 288 73 HOH HOH . F 5 HOH H 42 289 75 HOH HOH . F 5 HOH H 43 290 76 HOH HOH . F 5 HOH H 44 291 77 HOH HOH . F 5 HOH H 45 292 78 HOH HOH . F 5 HOH H 46 293 79 HOH HOH . F 5 HOH H 47 294 81 HOH HOH . F 5 HOH H 48 295 82 HOH HOH . F 5 HOH H 49 296 83 HOH HOH . F 5 HOH H 50 297 86 HOH HOH . F 5 HOH H 51 298 87 HOH HOH . F 5 HOH H 52 299 88 HOH HOH . F 5 HOH H 53 300 89 HOH HOH . F 5 HOH H 54 301 91 HOH HOH . F 5 HOH H 55 302 92 HOH HOH . F 5 HOH H 56 303 94 HOH HOH . F 5 HOH H 57 304 95 HOH HOH . F 5 HOH H 58 305 97 HOH HOH . F 5 HOH H 59 306 102 HOH HOH . F 5 HOH H 60 307 103 HOH HOH . F 5 HOH H 61 308 105 HOH HOH . F 5 HOH H 62 309 106 HOH HOH . F 5 HOH H 63 310 108 HOH HOH . F 5 HOH H 64 311 109 HOH HOH . F 5 HOH H 65 312 111 HOH HOH . F 5 HOH H 66 313 112 HOH HOH . F 5 HOH H 67 314 115 HOH HOH . F 5 HOH H 68 315 116 HOH HOH . F 5 HOH H 69 316 117 HOH HOH . F 5 HOH H 70 317 118 HOH HOH . F 5 HOH H 71 318 119 HOH HOH . F 5 HOH H 72 319 121 HOH HOH . F 5 HOH H 73 320 124 HOH HOH . F 5 HOH H 74 321 125 HOH HOH . F 5 HOH H 75 322 126 HOH HOH . F 5 HOH H 76 323 127 HOH HOH . F 5 HOH H 77 324 128 HOH HOH . F 5 HOH H 78 325 129 HOH HOH . F 5 HOH H 79 326 130 HOH HOH . F 5 HOH H 80 327 131 HOH HOH . F 5 HOH H 81 328 132 HOH HOH . F 5 HOH H 82 329 141 HOH HOH . F 5 HOH H 83 330 142 HOH HOH . F 5 HOH H 84 331 143 HOH HOH . F 5 HOH H 85 332 144 HOH HOH . F 5 HOH H 86 333 145 HOH HOH . F 5 HOH H 87 334 150 HOH HOH . F 5 HOH H 88 335 151 HOH HOH . F 5 HOH H 89 336 155 HOH HOH . F 5 HOH H 90 337 161 HOH HOH . F 5 HOH H 91 338 163 HOH HOH . F 5 HOH H 92 339 172 HOH HOH . F 5 HOH H 93 340 173 HOH HOH . F 5 HOH H 94 341 180 HOH HOH . F 5 HOH H 95 342 181 HOH HOH . F 5 HOH H 96 343 182 HOH HOH . F 5 HOH H 97 344 184 HOH HOH . F 5 HOH H 98 345 188 HOH HOH . F 5 HOH H 99 346 189 HOH HOH . F 5 HOH H 100 347 190 HOH HOH . F 5 HOH H 101 348 191 HOH HOH . F 5 HOH H 102 349 192 HOH HOH . F 5 HOH H 103 350 193 HOH HOH . F 5 HOH H 104 351 194 HOH HOH . F 5 HOH H 105 352 195 HOH HOH . F 5 HOH H 106 353 196 HOH HOH . F 5 HOH H 107 354 197 HOH HOH . F 5 HOH H 108 355 198 HOH HOH . F 5 HOH H 109 356 199 HOH HOH . F 5 HOH H 110 357 200 HOH HOH . G 5 HOH D 1 31 31 HOH HOH . G 5 HOH D 2 39 39 HOH HOH . G 5 HOH D 3 44 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 3SP . . . D 4 17.508 19.648 22.662 1 23.41 ? C18 3SP 1 H 1 HETATM 2 O O19 3SP . . . D 4 16.617 20.308 23.168 1 24.43 ? O19 3SP 1 H 1 HETATM 3 C C20 3SP . . . D 4 17.787 18.25 23.191 1 24.27 ? C20 3SP 1 H 1 HETATM 4 C C24 3SP . . . D 4 18.336 18.31 24.638 1 23.61 ? C24 3SP 1 H 1 HETATM 5 C C25 3SP . . . D 4 19.733 18.952 24.668 1 21.77 ? C25 3SP 1 H 1 HETATM 6 C C26 3SP . . . D 4 20.056 19.431 26.094 1 21.23 ? C26 3SP 1 H 1 HETATM 7 C C27 3SP . . . D 4 21.442 20.125 26.111 1 23.84 ? C27 3SP 1 H 1 HETATM 8 C C28 3SP . . . D 4 22.543 19.153 25.619 1 23.04 ? C28 3SP 1 H 1 HETATM 9 C C29 3SP . . . D 4 22.203 18.611 24.208 1 24.36 ? C29 3SP 1 H 1 HETATM 10 C C30 3SP . . . D 4 20.807 17.933 24.212 1 22.99 ? C30 3SP 1 H 1 HETATM 11 N N21 3SP . . . D 4 16.538 17.477 23.168 1 23.4 ? N21 3SP 1 H 1 HETATM 12 C C22 3SP . . . D 4 15.969 17.042 21.879 1 30.47 ? C22 3SP 1 H 1 HETATM 13 C C23 3SP . . . D 4 14.515 16.67 22.049 1 33.2 ? C23 3SP 1 H 1 HETATM 14 O O31 3SP . . . D 4 14.098 16.302 23.137 1 33.38 ? O31 3SP 1 H 1 HETATM 15 O O32 3SP . . . D 4 13.753 16.733 21.09 1 37.73 ? O32 3SP 1 H 1 HETATM 16 N N17 3SP . . . D 4 18.239 20.161 21.621 1 21.62 ? N17 3SP 1 H 1 HETATM 17 C C13 3SP . . . D 4 18.049 21.509 21.005 1 21.64 ? C13 3SP 1 H 1 HETATM 18 C C11 3SP . . . D 4 16.642 21.602 20.45 1 21.75 ? C11 3SP 1 H 1 HETATM 19 O O12 3SP . . . D 4 16.213 20.688 19.755 1 20.77 ? O12 3SP 1 H 1 HETATM 20 C C14 3SP . . . D 4 19.09 21.624 19.854 1 19.88 ? C14 3SP 1 H 1 HETATM 21 C C15 3SP . . . D 4 20.165 20.576 20.244 1 23.13 ? C15 3SP 1 H 1 HETATM 22 C C16 3SP . . . D 4 19.335 19.479 20.915 1 19.6 ? C16 3SP 1 H 1 HETATM 23 C C1 3SP . . . D 4 11.987 22.183 23.007 1 16.26 ? C1 3SP 1 H 1 HETATM 24 C C2 3SP . . . D 4 12.34 20.938 22.463 1 17.97 ? C2 3SP 1 H 1 HETATM 25 C C3 3SP . . . D 4 13.293 21.06 21.433 1 16.41 ? C3 3SP 1 H 1 HETATM 26 C C4 3SP . . . D 4 13.654 22.401 21.205 1 17.75 ? C4 3SP 1 H 1 HETATM 27 S S5 3SP . . . D 4 12.824 23.451 22.252 1 18.16 ? S5 3SP 1 H 1 HETATM 28 C C6 3SP . . . D 4 11.002 22.381 24.095 1 18.67 ? C6 3SP 1 H 1 HETATM 29 N N7 3SP . . . D 4 10.354 21.335 24.617 1 14.77 ? N7 3SP 1 H 1 HETATM 30 N N8 3SP . . . D 4 10.754 23.611 24.552 1 15.98 ? N8 3SP 1 H 1 HETATM 31 C C9 3SP . . . D 4 14.528 22.806 20.27 1 17.81 ? C9 3SP 1 H 1 HETATM 32 N N10 3SP . . . D 4 15.855 22.688 20.75 1 21.35 ? N10 3SP 1 H 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #