data_2FF7 # _model_server_result.job_id L07Dnj78Kw1yZoRKpitaRA _model_server_result.datetime_utc '2024-11-23 21:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ff7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":708}' # _entry.id 2FF7 # _exptl.entry_id 2FF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.41 _cell.angle_gamma 90 _cell.entry_id 2FF7 _cell.length_a 180.37 _cell.length_b 34.837 _cell.length_c 37.82 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2FF7 _atom_sites.fract_transf_matrix[1][1] 0.005544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00082 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 708 708 ADP ADP . C 3 HOH A 1 709 709 HOH HOH . C 3 HOH A 2 710 710 HOH HOH . C 3 HOH A 3 711 711 HOH HOH . C 3 HOH A 4 712 712 HOH HOH . C 3 HOH A 5 713 713 HOH HOH . C 3 HOH A 6 714 714 HOH HOH . C 3 HOH A 7 715 715 HOH HOH . C 3 HOH A 8 716 716 HOH HOH . C 3 HOH A 9 717 717 HOH HOH . C 3 HOH A 10 718 718 HOH HOH . C 3 HOH A 11 719 719 HOH HOH . C 3 HOH A 12 720 720 HOH HOH . C 3 HOH A 13 721 721 HOH HOH . C 3 HOH A 14 722 722 HOH HOH . C 3 HOH A 15 723 723 HOH HOH . C 3 HOH A 16 724 724 HOH HOH . C 3 HOH A 17 725 725 HOH HOH . C 3 HOH A 18 726 726 HOH HOH . C 3 HOH A 19 727 727 HOH HOH . C 3 HOH A 20 728 728 HOH HOH . C 3 HOH A 21 729 729 HOH HOH . C 3 HOH A 22 730 730 HOH HOH . C 3 HOH A 23 731 731 HOH HOH . C 3 HOH A 24 732 732 HOH HOH . C 3 HOH A 25 733 733 HOH HOH . C 3 HOH A 26 734 734 HOH HOH . C 3 HOH A 27 735 735 HOH HOH . C 3 HOH A 28 736 736 HOH HOH . C 3 HOH A 29 737 737 HOH HOH . C 3 HOH A 30 738 738 HOH HOH . C 3 HOH A 31 739 739 HOH HOH . C 3 HOH A 32 740 740 HOH HOH . C 3 HOH A 33 741 741 HOH HOH . C 3 HOH A 34 742 742 HOH HOH . C 3 HOH A 35 743 743 HOH HOH . C 3 HOH A 36 744 744 HOH HOH . C 3 HOH A 37 745 745 HOH HOH . C 3 HOH A 38 746 746 HOH HOH . C 3 HOH A 39 747 747 HOH HOH . C 3 HOH A 40 748 748 HOH HOH . C 3 HOH A 41 749 749 HOH HOH . C 3 HOH A 42 750 750 HOH HOH . C 3 HOH A 43 751 751 HOH HOH . C 3 HOH A 44 752 752 HOH HOH . C 3 HOH A 45 753 753 HOH HOH . C 3 HOH A 46 754 754 HOH HOH . C 3 HOH A 47 755 755 HOH HOH . C 3 HOH A 48 756 756 HOH HOH . C 3 HOH A 49 757 757 HOH HOH . C 3 HOH A 50 758 758 HOH HOH . C 3 HOH A 51 759 759 HOH HOH . C 3 HOH A 52 760 760 HOH HOH . C 3 HOH A 53 761 761 HOH HOH . C 3 HOH A 54 762 762 HOH HOH . C 3 HOH A 55 763 763 HOH HOH . C 3 HOH A 56 764 764 HOH HOH . C 3 HOH A 57 765 765 HOH HOH . C 3 HOH A 58 766 766 HOH HOH . C 3 HOH A 59 767 767 HOH HOH . C 3 HOH A 60 768 768 HOH HOH . C 3 HOH A 61 769 769 HOH HOH . C 3 HOH A 62 770 770 HOH HOH . C 3 HOH A 63 771 771 HOH HOH . C 3 HOH A 64 772 772 HOH HOH . C 3 HOH A 65 773 773 HOH HOH . C 3 HOH A 66 774 774 HOH HOH . C 3 HOH A 67 775 775 HOH HOH . C 3 HOH A 68 776 776 HOH HOH . C 3 HOH A 69 777 777 HOH HOH . C 3 HOH A 70 778 778 HOH HOH . C 3 HOH A 71 779 779 HOH HOH . C 3 HOH A 72 780 780 HOH HOH . C 3 HOH A 73 781 781 HOH HOH . C 3 HOH A 74 782 782 HOH HOH . C 3 HOH A 75 783 783 HOH HOH . C 3 HOH A 76 784 784 HOH HOH . C 3 HOH A 77 785 785 HOH HOH . C 3 HOH A 78 786 786 HOH HOH . C 3 HOH A 79 787 787 HOH HOH . C 3 HOH A 80 788 788 HOH HOH . C 3 HOH A 81 789 789 HOH HOH . C 3 HOH A 82 790 790 HOH HOH . C 3 HOH A 83 791 791 HOH HOH . C 3 HOH A 84 792 792 HOH HOH . C 3 HOH A 85 793 793 HOH HOH . C 3 HOH A 86 794 794 HOH HOH . C 3 HOH A 87 795 795 HOH HOH . C 3 HOH A 88 796 796 HOH HOH . C 3 HOH A 89 797 797 HOH HOH . C 3 HOH A 90 798 798 HOH HOH . C 3 HOH A 91 799 799 HOH HOH . C 3 HOH A 92 800 800 HOH HOH . C 3 HOH A 93 801 801 HOH HOH . C 3 HOH A 94 802 802 HOH HOH . C 3 HOH A 95 803 803 HOH HOH . C 3 HOH A 96 804 804 HOH HOH . C 3 HOH A 97 805 805 HOH HOH . C 3 HOH A 98 806 806 HOH HOH . C 3 HOH A 99 807 807 HOH HOH . C 3 HOH A 100 808 808 HOH HOH . C 3 HOH A 101 809 809 HOH HOH . C 3 HOH A 102 810 810 HOH HOH . C 3 HOH A 103 811 811 HOH HOH . C 3 HOH A 104 812 812 HOH HOH . C 3 HOH A 105 813 813 HOH HOH . C 3 HOH A 106 814 814 HOH HOH . C 3 HOH A 107 815 815 HOH HOH . C 3 HOH A 108 816 816 HOH HOH . C 3 HOH A 109 817 817 HOH HOH . C 3 HOH A 110 818 818 HOH HOH . C 3 HOH A 111 819 819 HOH HOH . C 3 HOH A 112 820 820 HOH HOH . C 3 HOH A 113 821 821 HOH HOH . C 3 HOH A 114 822 822 HOH HOH . C 3 HOH A 115 823 823 HOH HOH . C 3 HOH A 116 824 824 HOH HOH . C 3 HOH A 117 825 825 HOH HOH . C 3 HOH A 118 826 826 HOH HOH . C 3 HOH A 119 827 827 HOH HOH . C 3 HOH A 120 828 828 HOH HOH . C 3 HOH A 121 829 829 HOH HOH . C 3 HOH A 122 830 830 HOH HOH . C 3 HOH A 123 831 831 HOH HOH . C 3 HOH A 124 832 832 HOH HOH . C 3 HOH A 125 833 833 HOH HOH . C 3 HOH A 126 834 834 HOH HOH . C 3 HOH A 127 835 835 HOH HOH . C 3 HOH A 128 836 836 HOH HOH . C 3 HOH A 129 837 837 HOH HOH . C 3 HOH A 130 838 838 HOH HOH . C 3 HOH A 131 839 839 HOH HOH . C 3 HOH A 132 840 840 HOH HOH . C 3 HOH A 133 841 841 HOH HOH . C 3 HOH A 134 842 842 HOH HOH . C 3 HOH A 135 843 843 HOH HOH . C 3 HOH A 136 844 844 HOH HOH . C 3 HOH A 137 845 845 HOH HOH . C 3 HOH A 138 846 846 HOH HOH . C 3 HOH A 139 847 847 HOH HOH . C 3 HOH A 140 848 848 HOH HOH . C 3 HOH A 141 849 849 HOH HOH . C 3 HOH A 142 850 850 HOH HOH . C 3 HOH A 143 851 851 HOH HOH . C 3 HOH A 144 852 852 HOH HOH . C 3 HOH A 145 853 853 HOH HOH . C 3 HOH A 146 854 854 HOH HOH . C 3 HOH A 147 855 855 HOH HOH . C 3 HOH A 148 856 856 HOH HOH . C 3 HOH A 149 857 857 HOH HOH . C 3 HOH A 150 858 858 HOH HOH . C 3 HOH A 151 859 859 HOH HOH . C 3 HOH A 152 860 860 HOH HOH . C 3 HOH A 153 861 861 HOH HOH . C 3 HOH A 154 862 862 HOH HOH . C 3 HOH A 155 863 863 HOH HOH . C 3 HOH A 156 864 864 HOH HOH . C 3 HOH A 157 865 865 HOH HOH . C 3 HOH A 158 866 866 HOH HOH . C 3 HOH A 159 867 867 HOH HOH . C 3 HOH A 160 868 868 HOH HOH . C 3 HOH A 161 869 869 HOH HOH . C 3 HOH A 162 870 870 HOH HOH . C 3 HOH A 163 871 871 HOH HOH . C 3 HOH A 164 872 872 HOH HOH . C 3 HOH A 165 873 873 HOH HOH . C 3 HOH A 166 874 874 HOH HOH . C 3 HOH A 167 875 875 HOH HOH . C 3 HOH A 168 876 876 HOH HOH . C 3 HOH A 169 877 877 HOH HOH . C 3 HOH A 170 878 878 HOH HOH . C 3 HOH A 171 879 879 HOH HOH . C 3 HOH A 172 880 880 HOH HOH . C 3 HOH A 173 881 881 HOH HOH . C 3 HOH A 174 882 882 HOH HOH . C 3 HOH A 175 883 883 HOH HOH . C 3 HOH A 176 884 884 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 162.199 60.869 -66.584 1 16.31 ? PB ADP 708 A 1 HETATM 2 O O1B ADP . . . B 2 163.316 61.181 -67.553 1 17.41 ? O1B ADP 708 A 1 HETATM 3 O O2B ADP . . . B 2 161.764 59.412 -66.887 1 21.04 ? O2B ADP 708 A 1 HETATM 4 O O3B ADP . . . B 2 162.406 61.186 -65.102 1 18.94 ? O3B ADP 708 A 1 HETATM 5 P PA ADP . . . B 2 160.349 63.056 -66.567 1 19.95 ? PA ADP 708 A 1 HETATM 6 O O1A ADP . . . B 2 159.38 62.717 -65.494 1 19.91 ? O1A ADP 708 A 1 HETATM 7 O O2A ADP . . . B 2 161.426 63.988 -66.027 1 23.44 ? O2A ADP 708 A 1 HETATM 8 O O3A ADP . . . B 2 160.952 61.712 -67.153 1 18.79 ? O3A ADP 708 A 1 HETATM 9 O O5' ADP . . . B 2 159.547 63.758 -67.755 1 21.7 ? O5' ADP 708 A 1 HETATM 10 C C5' ADP . . . B 2 158.544 63.086 -68.482 1 23.59 ? C5' ADP 708 A 1 HETATM 11 C C4' ADP . . . B 2 157.973 64.102 -69.469 1 24.86 ? C4' ADP 708 A 1 HETATM 12 O O4' ADP . . . B 2 157.535 65.232 -68.746 1 24.89 ? O4' ADP 708 A 1 HETATM 13 C C3' ADP . . . B 2 159.003 64.597 -70.492 1 25.47 ? C3' ADP 708 A 1 HETATM 14 O O3' ADP . . . B 2 158.335 64.745 -71.727 1 30.33 ? O3' ADP 708 A 1 HETATM 15 C C2' ADP . . . B 2 159.395 65.96 -69.938 1 27.27 ? C2' ADP 708 A 1 HETATM 16 O O2' ADP . . . B 2 159.852 66.88 -70.901 1 31.03 ? O2' ADP 708 A 1 HETATM 17 C C1' ADP . . . B 2 158.122 66.422 -69.264 1 25.61 ? C1' ADP 708 A 1 HETATM 18 N N9 ADP . . . B 2 158.346 67.377 -68.167 1 24.82 ? N9 ADP 708 A 1 HETATM 19 C C8 ADP . . . B 2 159.14 67.222 -67.045 1 25.27 ? C8 ADP 708 A 1 HETATM 20 N N7 ADP . . . B 2 159.038 68.32 -66.253 1 21.2 ? N7 ADP 708 A 1 HETATM 21 C C5 ADP . . . B 2 158.189 69.181 -66.871 1 22.91 ? C5 ADP 708 A 1 HETATM 22 C C6 ADP . . . B 2 157.734 70.444 -66.531 1 24.65 ? C6 ADP 708 A 1 HETATM 23 N N6 ADP . . . B 2 158.13 71.02 -65.389 1 26.35 ? N6 ADP 708 A 1 HETATM 24 N N1 ADP . . . B 2 156.842 71.074 -67.384 1 23.88 ? N1 ADP 708 A 1 HETATM 25 C C2 ADP . . . B 2 156.401 70.49 -68.548 1 25.24 ? C2 ADP 708 A 1 HETATM 26 N N3 ADP . . . B 2 156.86 69.224 -68.877 1 25.41 ? N3 ADP 708 A 1 HETATM 27 C C4 ADP . . . B 2 157.745 68.599 -68.062 1 25.31 ? C4 ADP 708 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #