data_2FFB # _model_server_result.job_id r1y92MKulMWwccgGqjxgjw _model_server_result.datetime_utc '2024-12-06 01:37:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ffb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":708}' # _entry.id 2FFB # _exptl.entry_id 2FFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.97 _cell.angle_gamma 90 _cell.entry_id 2FFB _cell.length_a 178.568 _cell.length_b 34.748 _cell.length_c 37.518 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2FFB _atom_sites.fract_transf_matrix[1][1] 0.0056 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 708 708 ADP ADP . C 3 HOH A 1 709 709 HOH WAT . C 3 HOH A 2 710 710 HOH WAT . C 3 HOH A 3 711 711 HOH WAT . C 3 HOH A 4 712 712 HOH WAT . C 3 HOH A 5 713 713 HOH WAT . C 3 HOH A 6 714 714 HOH WAT . C 3 HOH A 7 715 715 HOH WAT . C 3 HOH A 8 716 716 HOH WAT . C 3 HOH A 9 717 717 HOH WAT . C 3 HOH A 10 718 718 HOH WAT . C 3 HOH A 11 719 719 HOH WAT . C 3 HOH A 12 720 720 HOH WAT . C 3 HOH A 13 721 721 HOH WAT . C 3 HOH A 14 722 722 HOH WAT . C 3 HOH A 15 723 723 HOH WAT . C 3 HOH A 16 724 724 HOH WAT . C 3 HOH A 17 725 725 HOH WAT . C 3 HOH A 18 726 726 HOH WAT . C 3 HOH A 19 727 727 HOH WAT . C 3 HOH A 20 728 728 HOH WAT . C 3 HOH A 21 729 729 HOH WAT . C 3 HOH A 22 730 730 HOH WAT . C 3 HOH A 23 731 731 HOH WAT . C 3 HOH A 24 732 732 HOH WAT . C 3 HOH A 25 733 733 HOH WAT . C 3 HOH A 26 734 734 HOH WAT . C 3 HOH A 27 735 735 HOH WAT . C 3 HOH A 28 736 736 HOH WAT . C 3 HOH A 29 737 737 HOH WAT . C 3 HOH A 30 738 738 HOH WAT . C 3 HOH A 31 739 739 HOH WAT . C 3 HOH A 32 740 740 HOH WAT . C 3 HOH A 33 741 741 HOH WAT . C 3 HOH A 34 742 742 HOH WAT . C 3 HOH A 35 743 743 HOH WAT . C 3 HOH A 36 744 744 HOH WAT . C 3 HOH A 37 745 745 HOH WAT . C 3 HOH A 38 746 746 HOH WAT . C 3 HOH A 39 747 747 HOH WAT . C 3 HOH A 40 748 748 HOH WAT . C 3 HOH A 41 749 749 HOH WAT . C 3 HOH A 42 750 750 HOH WAT . C 3 HOH A 43 751 751 HOH WAT . C 3 HOH A 44 752 752 HOH WAT . C 3 HOH A 45 753 753 HOH WAT . C 3 HOH A 46 754 754 HOH WAT . C 3 HOH A 47 755 755 HOH WAT . C 3 HOH A 48 756 756 HOH WAT . C 3 HOH A 49 757 757 HOH WAT . C 3 HOH A 50 758 758 HOH WAT . C 3 HOH A 51 759 759 HOH WAT . C 3 HOH A 52 760 760 HOH WAT . C 3 HOH A 53 761 761 HOH WAT . C 3 HOH A 54 762 762 HOH WAT . C 3 HOH A 55 763 763 HOH WAT . C 3 HOH A 56 764 764 HOH WAT . C 3 HOH A 57 765 765 HOH WAT . C 3 HOH A 58 766 766 HOH WAT . C 3 HOH A 59 767 767 HOH WAT . C 3 HOH A 60 768 768 HOH WAT . C 3 HOH A 61 769 769 HOH WAT . C 3 HOH A 62 770 770 HOH WAT . C 3 HOH A 63 771 771 HOH WAT . C 3 HOH A 64 772 772 HOH WAT . C 3 HOH A 65 773 773 HOH WAT . C 3 HOH A 66 774 774 HOH WAT . C 3 HOH A 67 775 775 HOH WAT . C 3 HOH A 68 776 776 HOH WAT . C 3 HOH A 69 777 777 HOH WAT . C 3 HOH A 70 778 778 HOH WAT . C 3 HOH A 71 779 779 HOH WAT . C 3 HOH A 72 780 780 HOH WAT . C 3 HOH A 73 781 781 HOH WAT . C 3 HOH A 74 782 782 HOH WAT . C 3 HOH A 75 783 783 HOH WAT . C 3 HOH A 76 784 784 HOH WAT . C 3 HOH A 77 785 785 HOH WAT . C 3 HOH A 78 786 786 HOH WAT . C 3 HOH A 79 787 787 HOH WAT . C 3 HOH A 80 788 788 HOH WAT . C 3 HOH A 81 789 789 HOH WAT . C 3 HOH A 82 790 790 HOH WAT . C 3 HOH A 83 791 791 HOH WAT . C 3 HOH A 84 792 792 HOH WAT . C 3 HOH A 85 793 793 HOH WAT . C 3 HOH A 86 794 794 HOH WAT . C 3 HOH A 87 795 795 HOH WAT . C 3 HOH A 88 796 796 HOH WAT . C 3 HOH A 89 797 797 HOH WAT . C 3 HOH A 90 798 798 HOH WAT . C 3 HOH A 91 799 799 HOH WAT . C 3 HOH A 92 800 800 HOH WAT . C 3 HOH A 93 801 801 HOH WAT . C 3 HOH A 94 802 802 HOH WAT . C 3 HOH A 95 803 803 HOH WAT . C 3 HOH A 96 804 804 HOH WAT . C 3 HOH A 97 805 805 HOH WAT . C 3 HOH A 98 806 806 HOH WAT . C 3 HOH A 99 807 807 HOH WAT . C 3 HOH A 100 808 808 HOH WAT . C 3 HOH A 101 809 809 HOH WAT . C 3 HOH A 102 810 810 HOH WAT . C 3 HOH A 103 811 811 HOH WAT . C 3 HOH A 104 812 812 HOH WAT . C 3 HOH A 105 813 813 HOH WAT . C 3 HOH A 106 814 814 HOH WAT . C 3 HOH A 107 815 815 HOH WAT . C 3 HOH A 108 816 816 HOH WAT . C 3 HOH A 109 817 817 HOH WAT . C 3 HOH A 110 818 818 HOH WAT . C 3 HOH A 111 819 819 HOH WAT . C 3 HOH A 112 820 820 HOH WAT . C 3 HOH A 113 821 821 HOH WAT . C 3 HOH A 114 822 822 HOH WAT . C 3 HOH A 115 823 823 HOH WAT . C 3 HOH A 116 824 824 HOH WAT . C 3 HOH A 117 825 825 HOH WAT . C 3 HOH A 118 826 826 HOH WAT . C 3 HOH A 119 827 827 HOH WAT . C 3 HOH A 120 828 828 HOH WAT . C 3 HOH A 121 829 829 HOH WAT . C 3 HOH A 122 830 830 HOH WAT . C 3 HOH A 123 831 831 HOH WAT . C 3 HOH A 124 832 832 HOH WAT . C 3 HOH A 125 833 833 HOH WAT . C 3 HOH A 126 834 834 HOH WAT . C 3 HOH A 127 835 835 HOH WAT . C 3 HOH A 128 836 836 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 23.892 1.38 29.184 1 36.21 ? PB ADP 708 A 1 HETATM 2 O O1B ADP . . . B 2 22.679 1.643 30.01 1 36.04 ? O1B ADP 708 A 1 HETATM 3 O O2B ADP . . . B 2 24.289 -0.074 29.461 1 37.93 ? O2B ADP 708 A 1 HETATM 4 O O3B ADP . . . B 2 23.502 1.735 27.739 1 33.42 ? O3B ADP 708 A 1 HETATM 5 P PA ADP . . . B 2 25.677 3.638 29.143 1 35.57 ? PA ADP 708 A 1 HETATM 6 O O1A ADP . . . B 2 26.633 3.289 28.039 1 33.66 ? O1A ADP 708 A 1 HETATM 7 O O2A ADP . . . B 2 24.603 4.582 28.64 1 36.39 ? O2A ADP 708 A 1 HETATM 8 O O3A ADP . . . B 2 25.103 2.271 29.739 1 35.47 ? O3A ADP 708 A 1 HETATM 9 O O5' ADP . . . B 2 26.538 4.345 30.324 1 37.48 ? O5' ADP 708 A 1 HETATM 10 C C5' ADP . . . B 2 27.499 3.627 31.079 1 40.75 ? C5' ADP 708 A 1 HETATM 11 C C4' ADP . . . B 2 28.101 4.607 32.077 1 43.19 ? C4' ADP 708 A 1 HETATM 12 O O4' ADP . . . B 2 28.608 5.738 31.43 1 42.62 ? O4' ADP 708 A 1 HETATM 13 C C3' ADP . . . B 2 27.119 5.178 33.16 1 42.4 ? C3' ADP 708 A 1 HETATM 14 O O3' ADP . . . B 2 27.849 5.409 34.346 1 44.46 ? O3' ADP 708 A 1 HETATM 15 C C2' ADP . . . B 2 26.621 6.439 32.522 1 42.67 ? C2' ADP 708 A 1 HETATM 16 O O2' ADP . . . B 2 26.175 7.387 33.466 1 46.37 ? O2' ADP 708 A 1 HETATM 17 C C1' ADP . . . B 2 27.896 6.901 31.859 1 42.73 ? C1' ADP 708 A 1 HETATM 18 N N9 ADP . . . B 2 27.652 7.865 30.782 1 40.66 ? N9 ADP 708 A 1 HETATM 19 C C8 ADP . . . B 2 26.824 7.764 29.69 1 39.9 ? C8 ADP 708 A 1 HETATM 20 N N7 ADP . . . B 2 26.929 8.892 28.95 1 35.9 ? N7 ADP 708 A 1 HETATM 21 C C5 ADP . . . B 2 27.812 9.722 29.582 1 38.03 ? C5 ADP 708 A 1 HETATM 22 C C6 ADP . . . B 2 28.286 10.994 29.3 1 38.7 ? C6 ADP 708 A 1 HETATM 23 N N6 ADP . . . B 2 27.834 11.673 28.241 1 40.01 ? N6 ADP 708 A 1 HETATM 24 N N1 ADP . . . B 2 29.197 11.588 30.154 1 40 ? N1 ADP 708 A 1 HETATM 25 C C2 ADP . . . B 2 29.649 10.935 31.293 1 39.83 ? C2 ADP 708 A 1 HETATM 26 N N3 ADP . . . B 2 29.168 9.679 31.571 1 39.28 ? N3 ADP 708 A 1 HETATM 27 C C4 ADP . . . B 2 28.263 9.091 30.733 1 39.71 ? C4 ADP 708 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #