data_2FFH # _model_server_result.job_id l3x6hoWOziiEeROyiIN5RQ _model_server_result.datetime_utc '2024-11-05 00:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ffh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":705}' # _entry.id 2FFH # _exptl.entry_id 2FFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FFH _cell.length_a 195.05 _cell.length_b 195.05 _cell.length_c 335.72 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 PISA nonameric 9 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 PISA hexameric 6 software_defined_assembly 6 PISA trimeric 3 software_defined_assembly 7 PISA dimeric 2 software_defined_assembly 8 PISA dimeric 2 software_defined_assembly 9 PISA dimeric 2 software_defined_assembly 10 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I 1 1 B,J,K,L,M,N 2 1 C,O,P,Q,R,S,T,U,V 3 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 4 1,2,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 5 1,4 C,O,P,Q,R,S,T,U,V 6 1,4 B,J,K,L,M,N 6 2,5 A,D,E,F,G,H,I 6 6,7 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 7 1 C,O,P,Q,R,S,T,U,V 8 1,4 B,J,K,L,M,N 9 1 A,D,E,F,G,H,I 9 4 C,O,P,Q,R,S,T,U,V 10 1 B,J,K,L,M,N 10 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 195.05 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 97.525 168.918255 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 335.72 5 'crystal symmetry operation' 5_566 x-y,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 -97.525 168.918255 335.72 6 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -97.525 168.918255 0 7 'crystal symmetry operation' 6_656 -x+1,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 195.05 0 335.72 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N MET 1 A MET 1 1_555 D CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 A OD1 ASP 97 A ASP 97 1_555 H CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc3 A OD2 ASP 97 A ASP 97 1_555 H CD CD . A CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc4 A OE2 GLU 225 A GLU 225 1_555 E CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.128 ? metalc ? metalc5 A OE1 GLU 225 A GLU 225 1_555 E CD CD . A CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 A ND1 HIS 261 A HIS 261 1_555 F CD CD . A CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 A OE1 GLU 280 A GLU 280 1_555 G CD CD . A CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc8 A OE2 GLU 280 A GLU 280 1_555 G CD CD . A CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc9 A OD1 ASP 296 A ASP 296 1_555 D CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc10 A OD2 ASP 296 A ASP 296 1_555 D CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc11 A OE1 GLU 302 A GLU 302 1_555 D CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc12 A OE2 GLU 302 A GLU 302 1_555 D CD CD . A CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc13 H CD CD . A CD 705 1_555 C NH2 ARG 146 C ARG 146 18_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc14 H CD CD . A CD 705 1_555 C OE1 GLU 158 C GLU 158 18_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc15 H CD CD . A CD 705 1_555 C OE2 GLU 158 C GLU 158 18_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc16 B N MET 1 B MET 1 1_555 J CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc17 B NH2 ARG 169 B ARG 169 2_655 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc18 B NH1 ARG 169 B ARG 169 2_655 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc19 B OE1 GLU 174 B GLU 174 2_655 T CD CD . C CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc20 B OE2 GLU 207 B GLU 207 2_655 U CD CD . C CD 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc21 B OE1 GLU 207 B GLU 207 2_655 U CD CD . C CD 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc22 B OE1 GLU 225 B GLU 225 1_555 K CD CD . B CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc23 B ND1 HIS 261 B HIS 261 1_555 L CD CD . B CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc24 B OE1 GLU 280 B GLU 280 1_555 M CD CD . B CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc25 B OD1 ASP 296 B ASP 296 1_555 J CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc26 B OD2 ASP 296 B ASP 296 1_555 J CD CD . B CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc27 B OE1 GLU 323 B GLU 323 1_555 K CD CD . B CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc28 C N MET 1 C MET 1 1_555 O CD CD . C CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc29 C OD1 ASP 50 C ASP 50 1_555 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc30 C OD2 ASP 50 C ASP 50 1_555 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc31 C OE1 GLU 84 C GLU 84 1_555 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc32 C OE2 GLU 84 C GLU 84 1_555 S CD CD . C CD 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc33 C OE1 GLU 89 C GLU 89 1_555 T CD CD . C CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc34 C OE2 GLU 89 C GLU 89 1_555 T CD CD . C CD 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc35 C OE1 GLU 225 C GLU 225 1_555 P CD CD . C CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc36 C ND1 HIS 261 C HIS 261 1_555 Q CD CD . C CD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc37 C OE1 GLU 280 C GLU 280 1_555 R CD CD . C CD 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc38 C OD2 ASP 296 C ASP 296 1_555 O CD CD . C CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc39 C OE1 GLU 302 C GLU 302 1_555 O CD CD . C CD 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc40 C OE1 GLU 323 C GLU 323 1_555 P CD CD . C CD 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2FFH _atom_sites.fract_transf_matrix[1][1] 0.005127 _atom_sites.fract_transf_matrix[1][2] 0.00296 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CD A 1 701 701 CD CD . E 2 CD A 1 702 702 CD CD . F 2 CD A 1 703 703 CD CD . G 2 CD A 1 704 704 CD CD . H 2 CD A 1 705 705 CD CD . I 3 SO4 A 1 750 750 SO4 SO4 . J 2 CD B 1 701 701 CD CD . K 2 CD B 1 702 702 CD CD . L 2 CD B 1 703 703 CD CD . M 2 CD B 1 704 704 CD CD . N 3 SO4 B 1 760 750 SO4 SO4 . O 2 CD C 1 701 701 CD CD . P 2 CD C 1 702 702 CD CD . Q 2 CD C 1 703 703 CD CD . R 2 CD C 1 704 704 CD CD . S 2 CD C 1 705 705 CD CD . T 2 CD C 1 706 706 CD CD . U 2 CD C 1 707 707 CD CD . V 3 SO4 C 1 770 750 SO4 SO4 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 84.322 _atom_site.Cartn_y 106.806 _atom_site.Cartn_z 105.456 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 108.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 705 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 210 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #