data_2FGK # _model_server_result.job_id bUf-A_VJVGudBVHU5Igq7w _model_server_result.datetime_utc '2024-11-20 11:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 2FGK # _exptl.entry_id 2FGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.87 _cell.angle_gamma 90 _cell.entry_id 2FGK _cell.length_a 47.142 _cell.length_b 189.256 _cell.length_c 63.475 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2FGK _atom_sites.fract_transf_matrix[1][1] 0.021213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008515 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 800 800 ATP ATP . F 2 ATP B 1 801 800 ATP ATP . G 2 ATP C 1 802 800 ATP ATP . H 2 ATP D 1 803 800 ATP ATP . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 2 2 HOH HOH . I 3 HOH A 3 10 10 HOH HOH . I 3 HOH A 4 23 23 HOH HOH . I 3 HOH A 5 24 24 HOH HOH . I 3 HOH A 6 26 26 HOH HOH . I 3 HOH A 7 31 31 HOH HOH . I 3 HOH A 8 36 36 HOH HOH . I 3 HOH A 9 37 37 HOH HOH . I 3 HOH A 10 41 41 HOH HOH . I 3 HOH A 11 47 47 HOH HOH . I 3 HOH A 12 51 51 HOH HOH . I 3 HOH A 13 62 62 HOH HOH . I 3 HOH A 14 63 63 HOH HOH . I 3 HOH A 15 69 69 HOH HOH . I 3 HOH A 16 73 73 HOH HOH . I 3 HOH A 17 77 77 HOH HOH . I 3 HOH A 18 84 84 HOH HOH . I 3 HOH A 19 92 92 HOH HOH . I 3 HOH A 20 96 96 HOH HOH . I 3 HOH A 21 97 97 HOH HOH . I 3 HOH A 22 102 102 HOH HOH . I 3 HOH A 23 104 104 HOH HOH . I 3 HOH A 24 106 106 HOH HOH . I 3 HOH A 25 112 112 HOH HOH . I 3 HOH A 26 114 114 HOH HOH . I 3 HOH A 27 115 115 HOH HOH . I 3 HOH A 28 118 118 HOH HOH . I 3 HOH A 29 119 119 HOH HOH . I 3 HOH A 30 123 123 HOH HOH . I 3 HOH A 31 124 124 HOH HOH . I 3 HOH A 32 126 126 HOH HOH . I 3 HOH A 33 129 129 HOH HOH . I 3 HOH A 34 133 133 HOH HOH . I 3 HOH A 35 137 137 HOH HOH . I 3 HOH A 36 142 142 HOH HOH . J 3 HOH B 1 5 5 HOH HOH . J 3 HOH B 2 17 17 HOH HOH . J 3 HOH B 3 18 18 HOH HOH . J 3 HOH B 4 20 20 HOH HOH . J 3 HOH B 5 21 21 HOH HOH . J 3 HOH B 6 22 22 HOH HOH . J 3 HOH B 7 25 25 HOH HOH . J 3 HOH B 8 28 28 HOH HOH . J 3 HOH B 9 40 40 HOH HOH . J 3 HOH B 10 45 45 HOH HOH . J 3 HOH B 11 48 48 HOH HOH . J 3 HOH B 12 53 53 HOH HOH . J 3 HOH B 13 56 56 HOH HOH . J 3 HOH B 14 57 57 HOH HOH . J 3 HOH B 15 60 60 HOH HOH . J 3 HOH B 16 64 64 HOH HOH . J 3 HOH B 17 66 66 HOH HOH . J 3 HOH B 18 67 67 HOH HOH . J 3 HOH B 19 71 71 HOH HOH . J 3 HOH B 20 72 72 HOH HOH . J 3 HOH B 21 74 74 HOH HOH . J 3 HOH B 22 75 75 HOH HOH . J 3 HOH B 23 81 81 HOH HOH . J 3 HOH B 24 86 86 HOH HOH . J 3 HOH B 25 93 93 HOH HOH . J 3 HOH B 26 95 95 HOH HOH . J 3 HOH B 27 100 100 HOH HOH . J 3 HOH B 28 101 101 HOH HOH . J 3 HOH B 29 109 109 HOH HOH . J 3 HOH B 30 110 110 HOH HOH . J 3 HOH B 31 117 117 HOH HOH . J 3 HOH B 32 120 120 HOH HOH . J 3 HOH B 33 121 121 HOH HOH . J 3 HOH B 34 122 122 HOH HOH . J 3 HOH B 35 125 125 HOH HOH . J 3 HOH B 36 127 127 HOH HOH . J 3 HOH B 37 131 131 HOH HOH . J 3 HOH B 38 132 132 HOH HOH . J 3 HOH B 39 143 143 HOH HOH . J 3 HOH B 40 145 145 HOH HOH . J 3 HOH B 41 147 147 HOH HOH . J 3 HOH B 42 148 148 HOH HOH . J 3 HOH B 43 149 149 HOH HOH . J 3 HOH B 44 150 150 HOH HOH . K 3 HOH C 1 3 3 HOH HOH . K 3 HOH C 2 4 4 HOH HOH . K 3 HOH C 3 6 6 HOH HOH . K 3 HOH C 4 8 8 HOH HOH . K 3 HOH C 5 11 11 HOH HOH . K 3 HOH C 6 14 14 HOH HOH . K 3 HOH C 7 19 19 HOH HOH . K 3 HOH C 8 30 30 HOH HOH . K 3 HOH C 9 44 44 HOH HOH . K 3 HOH C 10 46 46 HOH HOH . K 3 HOH C 11 50 50 HOH HOH . K 3 HOH C 12 52 52 HOH HOH . K 3 HOH C 13 54 54 HOH HOH . K 3 HOH C 14 70 70 HOH HOH . K 3 HOH C 15 76 76 HOH HOH . K 3 HOH C 16 79 79 HOH HOH . K 3 HOH C 17 83 83 HOH HOH . K 3 HOH C 18 85 85 HOH HOH . K 3 HOH C 19 87 87 HOH HOH . K 3 HOH C 20 94 94 HOH HOH . K 3 HOH C 21 98 98 HOH HOH . K 3 HOH C 22 103 103 HOH HOH . K 3 HOH C 23 113 113 HOH HOH . K 3 HOH C 24 116 116 HOH HOH . K 3 HOH C 25 128 128 HOH HOH . K 3 HOH C 26 130 130 HOH HOH . K 3 HOH C 27 134 134 HOH HOH . K 3 HOH C 28 135 135 HOH HOH . K 3 HOH C 29 139 139 HOH HOH . K 3 HOH C 30 140 140 HOH HOH . K 3 HOH C 31 144 144 HOH HOH . K 3 HOH C 32 146 146 HOH HOH . L 3 HOH D 1 7 7 HOH HOH . L 3 HOH D 2 9 9 HOH HOH . L 3 HOH D 3 12 12 HOH HOH . L 3 HOH D 4 13 13 HOH HOH . L 3 HOH D 5 15 15 HOH HOH . L 3 HOH D 6 16 16 HOH HOH . L 3 HOH D 7 27 27 HOH HOH . L 3 HOH D 8 29 29 HOH HOH . L 3 HOH D 9 32 32 HOH HOH . L 3 HOH D 10 33 33 HOH HOH . L 3 HOH D 11 34 34 HOH HOH . L 3 HOH D 12 35 35 HOH HOH . L 3 HOH D 13 38 38 HOH HOH . L 3 HOH D 14 39 39 HOH HOH . L 3 HOH D 15 42 42 HOH HOH . L 3 HOH D 16 43 43 HOH HOH . L 3 HOH D 17 49 49 HOH HOH . L 3 HOH D 18 55 55 HOH HOH . L 3 HOH D 19 58 58 HOH HOH . L 3 HOH D 20 59 59 HOH HOH . L 3 HOH D 21 61 61 HOH HOH . L 3 HOH D 22 65 65 HOH HOH . L 3 HOH D 23 68 68 HOH HOH . L 3 HOH D 24 78 78 HOH HOH . L 3 HOH D 25 80 80 HOH HOH . L 3 HOH D 26 82 82 HOH HOH . L 3 HOH D 27 88 88 HOH HOH . L 3 HOH D 28 89 89 HOH HOH . L 3 HOH D 29 90 90 HOH HOH . L 3 HOH D 30 91 91 HOH HOH . L 3 HOH D 31 99 99 HOH HOH . L 3 HOH D 32 105 105 HOH HOH . L 3 HOH D 33 107 107 HOH HOH . L 3 HOH D 34 108 108 HOH HOH . L 3 HOH D 35 111 111 HOH HOH . L 3 HOH D 36 136 136 HOH HOH . L 3 HOH D 37 138 138 HOH HOH . L 3 HOH D 38 141 141 HOH HOH . L 3 HOH D 39 151 151 HOH HOH . L 3 HOH D 40 152 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 -4.997 4.425 -2.604 1 33.08 ? PG ATP 800 A 1 HETATM 2 O O1G ATP . . . E 2 -5.685 5.603 -1.764 1 33.76 ? O1G ATP 800 A 1 HETATM 3 O O2G ATP . . . E 2 -3.427 4.765 -2.665 1 32.63 ? O2G ATP 800 A 1 HETATM 4 O O3G ATP . . . E 2 -5.273 3.1 -1.967 1 33.16 ? O3G ATP 800 A 1 HETATM 5 P PB ATP . . . E 2 -5.173 3.787 -5.388 1 34.37 ? PB ATP 800 A 1 HETATM 6 O O1B ATP . . . E 2 -3.985 4.318 -6.12 1 33.33 ? O1B ATP 800 A 1 HETATM 7 O O2B ATP . . . E 2 -5.232 2.335 -5.045 1 33.33 ? O2B ATP 800 A 1 HETATM 8 O O3B ATP . . . E 2 -5.529 4.675 -4.089 1 33.22 ? O3B ATP 800 A 1 HETATM 9 P PA ATP . . . E 2 -7.773 3.348 -6.436 1 35.04 ? PA ATP 800 A 1 HETATM 10 O O1A ATP . . . E 2 -8.26 2.72 -5.177 1 33.6 ? O1A ATP 800 A 1 HETATM 11 O O2A ATP . . . E 2 -7.501 2.503 -7.632 1 32.64 ? O2A ATP 800 A 1 HETATM 12 O O3A ATP . . . E 2 -6.483 4.274 -6.168 1 34.07 ? O3A ATP 800 A 1 HETATM 13 O O5' ATP . . . E 2 -8.787 4.518 -6.833 1 36.4 ? O5' ATP 800 A 1 HETATM 14 C C5' ATP . . . E 2 -8.403 5.464 -7.846 1 39.1 ? C5' ATP 800 A 1 HETATM 15 C C4' ATP . . . E 2 -9.604 6.315 -8.269 1 41.61 ? C4' ATP 800 A 1 HETATM 16 O O4' ATP . . . E 2 -10.793 5.471 -8.462 1 42.22 ? O4' ATP 800 A 1 HETATM 17 C C3' ATP . . . E 2 -9.937 7.303 -7.152 1 41.81 ? C3' ATP 800 A 1 HETATM 18 O O3' ATP . . . E 2 -10.228 8.559 -7.756 1 43.61 ? O3' ATP 800 A 1 HETATM 19 C C2' ATP . . . E 2 -11.191 6.724 -6.514 1 42.05 ? C2' ATP 800 A 1 HETATM 20 O O2' ATP . . . E 2 -12.023 7.764 -6.036 1 41.49 ? O2' ATP 800 A 1 HETATM 21 C C1' ATP . . . E 2 -11.875 6.025 -7.679 1 42.9 ? C1' ATP 800 A 1 HETATM 22 N N9 ATP . . . E 2 -12.608 4.832 -7.218 1 43.53 ? N9 ATP 800 A 1 HETATM 23 C C8 ATP . . . E 2 -12.077 3.81 -6.547 1 43.35 ? C8 ATP 800 A 1 HETATM 24 N N7 ATP . . . E 2 -13.023 2.904 -6.309 1 44.02 ? N7 ATP 800 A 1 HETATM 25 C C5 ATP . . . E 2 -14.162 3.341 -6.835 1 44.22 ? C5 ATP 800 A 1 HETATM 26 C C6 ATP . . . E 2 -15.461 2.828 -6.899 1 44.02 ? C6 ATP 800 A 1 HETATM 27 N N6 ATP . . . E 2 -15.751 1.647 -6.351 1 43.35 ? N6 ATP 800 A 1 HETATM 28 N N1 ATP . . . E 2 -16.414 3.547 -7.525 1 43.25 ? N1 ATP 800 A 1 HETATM 29 C C2 ATP . . . E 2 -16.125 4.717 -8.076 1 43.37 ? C2 ATP 800 A 1 HETATM 30 N N3 ATP . . . E 2 -14.902 5.23 -8.032 1 43.76 ? N3 ATP 800 A 1 HETATM 31 C C4 ATP . . . E 2 -13.901 4.571 -7.417 1 44.09 ? C4 ATP 800 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 713 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #