data_2FH5 # _model_server_result.job_id q0EGcF0Otd349_CHfOAJtw _model_server_result.datetime_utc '2024-10-18 14:32:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fh5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2FH5 # _exptl.entry_id 2FH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FH5 _cell.length_a 68.092 _cell.length_b 118.348 _cell.length_c 120.413 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 A,B,C,D,E,F 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.092 118.348 0 3 'crystal symmetry operation' 3_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 68.092 0 120.413 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 118.348 120.413 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 17 1_555 A SG CYS 34 A CYS 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 C MG MG . B MG 270 1_555 F O HOH . B HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc2 C MG MG . B MG 270 1_555 F O HOH . B HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc3 C MG MG . B MG 270 1_555 B OG1 THR 21 B THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 C MG MG . B MG 270 1_555 B OG SER 38 B SER 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 C MG MG . B MG 270 1_555 D O2B GTP . B GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 C MG MG . B MG 270 1_555 D O2G GTP . B GTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2FH5 _atom_sites.fract_transf_matrix[1][1] 0.014686 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG B 1 270 201 MG MO2 . D 4 GTP B 1 301 301 GTP GTP . E 5 HOH A 1 177 1 HOH HOH . E 5 HOH A 2 178 2 HOH HOH . E 5 HOH A 3 179 4 HOH HOH . E 5 HOH A 4 180 5 HOH HOH . E 5 HOH A 5 181 7 HOH HOH . E 5 HOH A 6 182 8 HOH HOH . E 5 HOH A 7 183 9 HOH HOH . E 5 HOH A 8 184 19 HOH HOH . E 5 HOH A 9 185 22 HOH HOH . E 5 HOH A 10 186 23 HOH HOH . E 5 HOH A 11 187 24 HOH HOH . E 5 HOH A 12 188 26 HOH HOH . E 5 HOH A 13 189 28 HOH HOH . E 5 HOH A 14 190 30 HOH HOH . E 5 HOH A 15 191 31 HOH HOH . E 5 HOH A 16 192 33 HOH HOH . E 5 HOH A 17 193 34 HOH HOH . E 5 HOH A 18 194 35 HOH HOH . E 5 HOH A 19 195 44 HOH HOH . E 5 HOH A 20 196 46 HOH HOH . E 5 HOH A 21 197 47 HOH HOH . E 5 HOH A 22 198 49 HOH HOH . E 5 HOH A 23 199 52 HOH HOH . E 5 HOH A 24 200 59 HOH HOH . E 5 HOH A 25 201 60 HOH HOH . E 5 HOH A 26 202 61 HOH HOH . E 5 HOH A 27 203 63 HOH HOH . E 5 HOH A 28 204 66 HOH HOH . E 5 HOH A 29 205 67 HOH HOH . E 5 HOH A 30 206 71 HOH HOH . E 5 HOH A 31 207 74 HOH HOH . E 5 HOH A 32 208 78 HOH HOH . E 5 HOH A 33 209 81 HOH HOH . E 5 HOH A 34 210 82 HOH HOH . E 5 HOH A 35 211 83 HOH HOH . E 5 HOH A 36 212 85 HOH HOH . E 5 HOH A 37 213 86 HOH HOH . E 5 HOH A 38 214 87 HOH HOH . E 5 HOH A 39 215 88 HOH HOH . E 5 HOH A 40 216 91 HOH HOH . E 5 HOH A 41 217 92 HOH HOH . E 5 HOH A 42 218 93 HOH HOH . E 5 HOH A 43 219 94 HOH HOH . E 5 HOH A 44 220 95 HOH HOH . E 5 HOH A 45 221 96 HOH HOH . E 5 HOH A 46 222 98 HOH HOH . E 5 HOH A 47 223 100 HOH HOH . E 5 HOH A 48 224 102 HOH HOH . E 5 HOH A 49 225 103 HOH HOH . F 5 HOH B 1 302 3 HOH HOH . F 5 HOH B 2 303 6 HOH HOH . F 5 HOH B 3 304 10 HOH HOH . F 5 HOH B 4 305 11 HOH HOH . F 5 HOH B 5 306 12 HOH HOH . F 5 HOH B 6 307 13 HOH HOH . F 5 HOH B 7 308 14 HOH HOH . F 5 HOH B 8 309 15 HOH HOH . F 5 HOH B 9 310 16 HOH HOH . F 5 HOH B 10 311 17 HOH HOH . F 5 HOH B 11 312 18 HOH HOH . F 5 HOH B 12 313 20 HOH HOH . F 5 HOH B 13 314 21 HOH HOH . F 5 HOH B 14 315 25 HOH HOH . F 5 HOH B 15 316 27 HOH HOH . F 5 HOH B 16 317 29 HOH HOH . F 5 HOH B 17 318 32 HOH HOH . F 5 HOH B 18 319 36 HOH HOH . F 5 HOH B 19 320 37 HOH HOH . F 5 HOH B 20 321 38 HOH HOH . F 5 HOH B 21 322 39 HOH HOH . F 5 HOH B 22 323 40 HOH HOH . F 5 HOH B 23 324 41 HOH HOH . F 5 HOH B 24 325 42 HOH HOH . F 5 HOH B 25 326 43 HOH HOH . F 5 HOH B 26 327 45 HOH HOH . F 5 HOH B 27 328 48 HOH HOH . F 5 HOH B 28 329 50 HOH HOH . F 5 HOH B 29 330 51 HOH HOH . F 5 HOH B 30 331 53 HOH HOH . F 5 HOH B 31 332 54 HOH HOH . F 5 HOH B 32 333 55 HOH HOH . F 5 HOH B 33 334 56 HOH HOH . F 5 HOH B 34 335 57 HOH HOH . F 5 HOH B 35 336 58 HOH HOH . F 5 HOH B 36 337 62 HOH HOH . F 5 HOH B 37 338 64 HOH HOH . F 5 HOH B 38 339 65 HOH HOH . F 5 HOH B 39 340 68 HOH HOH . F 5 HOH B 40 341 69 HOH HOH . F 5 HOH B 41 342 70 HOH HOH . F 5 HOH B 42 343 72 HOH HOH . F 5 HOH B 43 344 73 HOH HOH . F 5 HOH B 44 345 75 HOH HOH . F 5 HOH B 45 346 76 HOH HOH . F 5 HOH B 46 347 77 HOH HOH . F 5 HOH B 47 348 79 HOH HOH . F 5 HOH B 48 349 80 HOH HOH . F 5 HOH B 49 350 84 HOH HOH . F 5 HOH B 50 351 89 HOH HOH . F 5 HOH B 51 352 90 HOH HOH . F 5 HOH B 52 353 97 HOH HOH . F 5 HOH B 53 354 99 HOH HOH . F 5 HOH B 54 355 101 HOH HOH . F 5 HOH B 55 356 104 HOH HOH . F 5 HOH B 56 357 201 HOH MO2 . F 5 HOH B 57 358 201 HOH MO2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 30.497 45.332 33.156 1 36 ? PG GTP 301 B 1 HETATM 2 O O1G GTP . . . D 4 31.409 45.651 34.239 1 39.61 ? O1G GTP 301 B 1 HETATM 3 O O2G GTP . . . D 4 29.084 45.722 33.444 1 37.02 ? O2G GTP 301 B 1 HETATM 4 O O3G GTP . . . D 4 30.605 43.84 32.773 1 49.85 ? O3G GTP 301 B 1 HETATM 5 O O3B GTP . . . D 4 31.064 46.345 31.879 1 40.04 ? O3B GTP 301 B 1 HETATM 6 P PB GTP . . . D 4 30.47 46.447 30.471 1 38.06 ? PB GTP 301 B 1 HETATM 7 O O1B GTP . . . D 4 31.141 45.48 29.551 1 41.06 ? O1B GTP 301 B 1 HETATM 8 O O2B GTP . . . D 4 28.961 46.311 30.42 1 40.34 ? O2B GTP 301 B 1 HETATM 9 O O3A GTP . . . D 4 30.972 47.916 30.093 1 39.75 ? O3A GTP 301 B 1 HETATM 10 P PA GTP . . . D 4 30.142 49.176 29.643 1 36.81 ? PA GTP 301 B 1 HETATM 11 O O1A GTP . . . D 4 29.227 48.878 28.586 1 36.06 ? O1A GTP 301 B 1 HETATM 12 O O2A GTP . . . D 4 29.469 49.806 30.831 1 34.64 ? O2A GTP 301 B 1 HETATM 13 O O5' GTP . . . D 4 31.35 50.016 29.056 1 35 ? O5' GTP 301 B 1 HETATM 14 C C5' GTP . . . D 4 32.377 50.425 29.943 1 33.36 ? C5' GTP 301 B 1 HETATM 15 C C4' GTP . . . D 4 32.899 51.795 29.512 1 33.45 ? C4' GTP 301 B 1 HETATM 16 O O4' GTP . . . D 4 33.44 51.745 28.174 1 34.43 ? O4' GTP 301 B 1 HETATM 17 C C3' GTP . . . D 4 31.825 52.886 29.455 1 38.55 ? C3' GTP 301 B 1 HETATM 18 O O3' GTP . . . D 4 32.35 54.156 29.937 1 44.29 ? O3' GTP 301 B 1 HETATM 19 C C2' GTP . . . D 4 31.465 52.935 27.998 1 38.28 ? C2' GTP 301 B 1 HETATM 20 O O2' GTP . . . D 4 30.79 54.134 27.565 1 39.69 ? O2' GTP 301 B 1 HETATM 21 C C1' GTP . . . D 4 32.794 52.661 27.293 1 35.12 ? C1' GTP 301 B 1 HETATM 22 N N9 GTP . . . D 4 32.673 51.99 26.011 1 42.72 ? N9 GTP 301 B 1 HETATM 23 C C8 GTP . . . D 4 31.895 50.86 25.735 1 39.5 ? C8 GTP 301 B 1 HETATM 24 N N7 GTP . . . D 4 32.025 50.509 24.458 1 44.55 ? N7 GTP 301 B 1 HETATM 25 C C5 GTP . . . D 4 32.917 51.435 23.875 1 45.67 ? C5 GTP 301 B 1 HETATM 26 C C6 GTP . . . D 4 33.448 51.589 22.581 1 44.49 ? C6 GTP 301 B 1 HETATM 27 O O6 GTP . . . D 4 33.267 50.921 21.581 1 45.32 ? O6 GTP 301 B 1 HETATM 28 N N1 GTP . . . D 4 34.338 52.676 22.365 1 43.92 ? N1 GTP 301 B 1 HETATM 29 C C2 GTP . . . D 4 34.691 53.569 23.36 1 43.05 ? C2 GTP 301 B 1 HETATM 30 N N2 GTP . . . D 4 35.536 54.594 23.061 1 36.06 ? N2 GTP 301 B 1 HETATM 31 N N3 GTP . . . D 4 34.181 53.408 24.61 1 44.6 ? N3 GTP 301 B 1 HETATM 32 C C4 GTP . . . D 4 33.304 52.356 24.851 1 43.84 ? C4 GTP 301 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #