data_2FHD # _model_server_result.job_id uvGkCOQD30QaRq7jU02KDQ _model_server_result.datetime_utc '2024-10-18 22:25:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":309}' # _entry.id 2FHD # _exptl.entry_id 2FHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FHD _cell.length_a 116.924 _cell.length_b 116.924 _cell.length_c 87.015 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 PISA hexameric 6 author_and_software_defined_assembly 3 PISA hexameric 6 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,I,J,K,L,M,P 1 1,2 A,B,D,E,F,G,H,N,O 1 3,4 C,I,J,K,L,M,P 2 5,6 A,B,D,E,F,G,H,N,O 2 3,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 3,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 4 3,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.462 101.259154 29.005 2 'crystal symmetry operation' 6_664 -x+1,-x+y+1,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 58.462 101.259154 -29.005 3 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 3_664 -x+y+1,-x+1,z-2/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 58.462 101.259154 -58.01 6 'crystal symmetry operation' 6_665 -x+1,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 58.462 101.259154 58.01 7 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 29.005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 2 A HIS 356 1_555 A N MSE 3 A MSE 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MSE 3 A MSE 357 1_555 A N SER 4 A SER 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale3 A C ILE 40 A ILE 394 1_555 A N MSE 41 A MSE 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 41 A MSE 395 1_555 A N TYR 42 A TYR 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 A C THR 50 A THR 404 1_555 A N MSE 51 A MSE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 51 A MSE 405 1_555 A N SER 52 A SER 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ASP 104 A ASP 458 1_555 A N MSE 105 A MSE 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C MSE 105 A MSE 459 1_555 A N VAL 106 A VAL 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale9 A C ASP 144 A ASP 498 1_555 A N MSE 145 A MSE 499 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C ASP 144 A ASP 498 1_555 A N MSE 145 A MSE 499 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.322 ? covale ? covale11 A C MSE 145 A MSE 499 1_555 A N LYS 146 A LYS 500 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.344 ? covale ? covale12 A C MSE 145 A MSE 499 1_555 A N LYS 146 A LYS 500 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale13 B C ILE 40 B ILE 394 1_555 B N MSE 41 B MSE 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale14 B C MSE 41 B MSE 395 1_555 B N TYR 42 B TYR 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale15 B C THR 50 B THR 404 1_555 B N MSE 51 B MSE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale16 B C MSE 51 B MSE 405 1_555 B N SER 52 B SER 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale17 B C ASP 104 B ASP 458 1_555 B N MSE 105 B MSE 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.291 ? covale ? covale18 B C MSE 105 B MSE 459 1_555 B N VAL 106 B VAL 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale19 C O PRO 31 C PRO 385 1_555 C O MSE 41 C MSE 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? covale ? covale20 C C ILE 40 C ILE 394 1_555 C N MSE 41 C MSE 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale21 C C MSE 41 C MSE 395 1_555 C N TYR 42 C TYR 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale22 C C THR 50 C THR 404 1_555 C N MSE 51 C MSE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale23 C C MSE 51 C MSE 405 1_555 C N SER 52 C SER 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale24 C C ASP 104 C ASP 458 1_555 C N MSE 105 C MSE 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale25 C C MSE 105 C MSE 459 1_555 C N VAL 106 C VAL 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale26 C C ASP 144 C ASP 498 1_555 C N MSE 145 C MSE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale27 C C MSE 145 C MSE 499 1_555 C N LYS 146 C LYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2FHD _atom_sites.fract_transf_matrix[1][1] 0.008553 _atom_sites.fract_transf_matrix[1][2] 0.004938 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 301 301 PO4 PO4 . E 2 PO4 A 1 306 306 PO4 PO4 . F 2 PO4 A 1 307 307 PO4 PO4 . G 2 PO4 A 1 312 312 PO4 PO4 . H 2 PO4 B 1 311 311 PO4 PO4 . I 2 PO4 C 1 302 302 PO4 PO4 . J 2 PO4 C 1 303 303 PO4 PO4 . K 2 PO4 C 1 304 304 PO4 PO4 . L 2 PO4 C 1 305 305 PO4 PO4 . M 2 PO4 C 1 309 309 PO4 PO4 . N 3 HOH A 1 6 6 HOH HOH . N 3 HOH A 2 7 7 HOH HOH . N 3 HOH A 3 9 9 HOH HOH . N 3 HOH A 4 15 15 HOH HOH . N 3 HOH A 5 17 17 HOH HOH . N 3 HOH A 6 33 33 HOH HOH . N 3 HOH A 7 42 42 HOH HOH . N 3 HOH A 8 47 47 HOH HOH . N 3 HOH A 9 54 54 HOH HOH . N 3 HOH A 10 74 74 HOH HOH . N 3 HOH A 11 75 75 HOH HOH . N 3 HOH A 12 82 82 HOH HOH . N 3 HOH A 13 84 84 HOH HOH . N 3 HOH A 14 87 87 HOH HOH . N 3 HOH A 15 97 97 HOH HOH . N 3 HOH A 16 101 101 HOH HOH . N 3 HOH A 17 102 102 HOH HOH . N 3 HOH A 18 104 104 HOH HOH . N 3 HOH A 19 105 105 HOH HOH . N 3 HOH A 20 106 106 HOH HOH . N 3 HOH A 21 108 108 HOH HOH . N 3 HOH A 22 111 111 HOH HOH . N 3 HOH A 23 112 112 HOH HOH . N 3 HOH A 24 113 113 HOH HOH . N 3 HOH A 25 114 114 HOH HOH . N 3 HOH A 26 115 115 HOH HOH . N 3 HOH A 27 116 116 HOH HOH . N 3 HOH A 28 117 117 HOH HOH . N 3 HOH A 29 118 118 HOH HOH . N 3 HOH A 30 119 119 HOH HOH . N 3 HOH A 31 121 121 HOH HOH . N 3 HOH A 32 123 123 HOH HOH . N 3 HOH A 33 124 124 HOH HOH . N 3 HOH A 34 125 125 HOH HOH . N 3 HOH A 35 141 141 HOH HOH . N 3 HOH A 36 143 143 HOH HOH . N 3 HOH A 37 144 144 HOH HOH . N 3 HOH A 38 146 146 HOH HOH . N 3 HOH A 39 147 147 HOH HOH . N 3 HOH A 40 150 150 HOH HOH . N 3 HOH A 41 152 152 HOH HOH . N 3 HOH A 42 162 162 HOH HOH . N 3 HOH A 43 164 164 HOH HOH . N 3 HOH A 44 165 165 HOH HOH . N 3 HOH A 45 171 171 HOH HOH . N 3 HOH A 46 174 174 HOH HOH . N 3 HOH A 47 175 175 HOH HOH . N 3 HOH A 48 178 178 HOH HOH . N 3 HOH A 49 181 181 HOH HOH . N 3 HOH A 50 182 182 HOH HOH . N 3 HOH A 51 186 186 HOH HOH . N 3 HOH A 52 190 190 HOH HOH . N 3 HOH A 53 191 191 HOH HOH . N 3 HOH A 54 195 195 HOH HOH . N 3 HOH A 55 200 200 HOH HOH . N 3 HOH A 56 201 201 HOH HOH . N 3 HOH A 57 211 211 HOH HOH . N 3 HOH A 58 213 213 HOH HOH . N 3 HOH A 59 214 214 HOH HOH . N 3 HOH A 60 219 219 HOH HOH . N 3 HOH A 61 220 220 HOH HOH . N 3 HOH A 62 221 221 HOH HOH . N 3 HOH A 63 222 222 HOH HOH . N 3 HOH A 64 223 223 HOH HOH . N 3 HOH A 65 225 225 HOH HOH . N 3 HOH A 66 226 226 HOH HOH . N 3 HOH A 67 227 227 HOH HOH . N 3 HOH A 68 230 230 HOH HOH . N 3 HOH A 69 235 235 HOH HOH . O 3 HOH B 1 4 4 HOH HOH . O 3 HOH B 2 14 14 HOH HOH . O 3 HOH B 3 18 18 HOH HOH . O 3 HOH B 4 25 25 HOH HOH . O 3 HOH B 5 34 34 HOH HOH . O 3 HOH B 6 35 35 HOH HOH . O 3 HOH B 7 59 59 HOH HOH . O 3 HOH B 8 70 70 HOH HOH . O 3 HOH B 9 88 88 HOH HOH . O 3 HOH B 10 90 90 HOH HOH . O 3 HOH B 11 93 93 HOH HOH . O 3 HOH B 12 120 120 HOH HOH . O 3 HOH B 13 133 133 HOH HOH . O 3 HOH B 14 136 136 HOH HOH . O 3 HOH B 15 137 137 HOH HOH . O 3 HOH B 16 138 138 HOH HOH . O 3 HOH B 17 140 140 HOH HOH . O 3 HOH B 18 142 142 HOH HOH . O 3 HOH B 19 148 148 HOH HOH . O 3 HOH B 20 149 149 HOH HOH . O 3 HOH B 21 151 151 HOH HOH . O 3 HOH B 22 155 155 HOH HOH . O 3 HOH B 23 156 156 HOH HOH . O 3 HOH B 24 157 157 HOH HOH . O 3 HOH B 25 160 160 HOH HOH . O 3 HOH B 26 161 161 HOH HOH . O 3 HOH B 27 163 163 HOH HOH . O 3 HOH B 28 168 168 HOH HOH . O 3 HOH B 29 169 169 HOH HOH . O 3 HOH B 30 172 172 HOH HOH . O 3 HOH B 31 185 185 HOH HOH . O 3 HOH B 32 187 187 HOH HOH . O 3 HOH B 33 192 192 HOH HOH . O 3 HOH B 34 194 194 HOH HOH . O 3 HOH B 35 197 197 HOH HOH . O 3 HOH B 36 203 203 HOH HOH . O 3 HOH B 37 207 207 HOH HOH . O 3 HOH B 38 212 212 HOH HOH . O 3 HOH B 39 215 215 HOH HOH . O 3 HOH B 40 217 217 HOH HOH . O 3 HOH B 41 224 224 HOH HOH . O 3 HOH B 42 228 228 HOH HOH . O 3 HOH B 43 229 229 HOH HOH . O 3 HOH B 44 231 231 HOH HOH . O 3 HOH B 45 232 232 HOH HOH . O 3 HOH B 46 233 233 HOH HOH . O 3 HOH B 47 234 234 HOH HOH . P 3 HOH C 1 1 1 HOH HOH . P 3 HOH C 2 8 8 HOH HOH . P 3 HOH C 3 16 16 HOH HOH . P 3 HOH C 4 21 21 HOH HOH . P 3 HOH C 5 31 31 HOH HOH . P 3 HOH C 6 32 32 HOH HOH . P 3 HOH C 7 37 37 HOH HOH . P 3 HOH C 8 39 39 HOH HOH . P 3 HOH C 9 55 55 HOH HOH . P 3 HOH C 10 76 76 HOH HOH . P 3 HOH C 11 77 77 HOH HOH . P 3 HOH C 12 91 91 HOH HOH . P 3 HOH C 13 98 98 HOH HOH . P 3 HOH C 14 122 122 HOH HOH . P 3 HOH C 15 126 126 HOH HOH . P 3 HOH C 16 128 128 HOH HOH . P 3 HOH C 17 129 129 HOH HOH . P 3 HOH C 18 130 130 HOH HOH . P 3 HOH C 19 131 131 HOH HOH . P 3 HOH C 20 132 132 HOH HOH . P 3 HOH C 21 153 153 HOH HOH . P 3 HOH C 22 154 154 HOH HOH . P 3 HOH C 23 159 159 HOH HOH . P 3 HOH C 24 167 167 HOH HOH . P 3 HOH C 25 173 173 HOH HOH . P 3 HOH C 26 176 176 HOH HOH . P 3 HOH C 27 177 177 HOH HOH . P 3 HOH C 28 179 179 HOH HOH . P 3 HOH C 29 180 180 HOH HOH . P 3 HOH C 30 183 183 HOH HOH . P 3 HOH C 31 184 184 HOH HOH . P 3 HOH C 32 188 188 HOH HOH . P 3 HOH C 33 189 189 HOH HOH . P 3 HOH C 34 193 193 HOH HOH . P 3 HOH C 35 196 196 HOH HOH . P 3 HOH C 36 198 198 HOH HOH . P 3 HOH C 37 199 199 HOH HOH . P 3 HOH C 38 206 206 HOH HOH . P 3 HOH C 39 208 208 HOH HOH . P 3 HOH C 40 218 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . M 2 40.817 3.856 2.056 1 92.33 ? P PO4 309 C 1 HETATM 2 O O1 PO4 . . . M 2 41.701 5.029 1.644 1 90 ? O1 PO4 309 C 1 HETATM 3 O O2 PO4 . . . M 2 39.622 4.286 2.878 1 91.69 ? O2 PO4 309 C 1 HETATM 4 O O3 PO4 . . . M 2 40.342 3.094 0.833 1 91.27 ? O3 PO4 309 C 1 HETATM 5 O O4 PO4 . . . M 2 41.573 2.919 2.973 1 92.85 ? O4 PO4 309 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #