data_2FK6 # _model_server_result.job_id db5PJqhIEbSHXepFXg5zqA _model_server_result.datetime_utc '2024-11-28 08:53:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2FK6 # _exptl.entry_id 2FK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.42 _cell.angle_gamma 90 _cell.entry_id 2FK6 _cell.length_a 173.54 _cell.length_b 42.4 _cell.length_c 110.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 289.512008 0 94.237525 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 67 A ASP 67 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc2 B NE2 HIS 68 A HIS 68 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 B OD2 ASP 211 A ASP 211 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc4 B NE2 HIS 269 A HIS 269 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 R G 1 1_555 A N3 C 72 R C 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 R G 1 1_555 A O2 C 72 R C 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 R G 1 1_555 A N4 C 72 R C 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 2 R C 2 1_555 A N1 G 71 R G 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 2 R C 2 1_555 A O6 G 71 R G 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 2 R C 2 1_555 A N2 G 71 R G 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 U 3 R U 3 1_555 A N1 A 70 R A 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 U 3 R U 3 1_555 A N6 A 70 R A 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 U 4 R U 4 1_555 A N1 A 69 R A 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 U 4 R U 4 1_555 A N6 A 69 R A 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 C 5 R C 5 1_555 A N1 G 68 R G 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 C 5 R C 5 1_555 A O6 G 68 R G 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 C 5 R C 5 1_555 A N2 G 68 R G 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 C 6 R C 6 1_555 A N1 G 67 R G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 C 6 R C 6 1_555 A O6 G 67 R G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 C 6 R C 6 1_555 A N2 G 67 R G 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 A 7 R A 7 1_555 A N3 U 66 R U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N6 A 7 R A 7 1_555 A O4 U 66 R U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog19 A N6 A 9 R A 9 1_555 A N7 A 23 R A 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-G MISPAIR' hydrog20 A N1 G 10 R G 10 1_555 A O6 G 24 R G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 G 10 R G 10 1_555 A N3 C 25 R C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 G 10 R G 10 1_555 A O2 C 25 R C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 G 10 R G 10 1_555 A N4 C 25 R C 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 11 R C 11 1_555 A N1 G 24 R G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 11 R C 11 1_555 A O6 G 24 R G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 11 R C 11 1_555 A N2 G 24 R G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 U 12 R U 12 1_555 A N1 A 23 R A 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O4 U 12 R U 12 1_555 A N6 A 23 R A 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 C 13 R C 13 1_555 A N1 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 C 13 R C 13 1_555 A O6 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 C 13 R C 13 1_555 A N2 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog32 A N1 G 15 R G 15 1_555 A O2 C 48 R C 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog33 A N2 G 15 R G 15 1_555 A N3 C 48 R C 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog34 A N1 G 18 R G 18 1_555 A O2 U 55 R U 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 G 19 R G 19 1_555 A N3 C 56 R C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N2 G 19 R G 19 1_555 A O2 C 56 R C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O6 G 19 R G 19 1_555 A N4 C 56 R C 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog38 A N7 G 22 R G 22 1_555 A N1 G 46 R G 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog39 A O6 G 22 R G 22 1_555 A N2 G 46 R G 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N1 A 49 R A 49 1_555 A N3 U 65 R U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A N6 A 49 R A 49 1_555 A O4 U 65 R U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N1 G 50 R G 50 1_555 A N3 C 64 R C 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N2 G 50 R G 50 1_555 A O2 C 64 R C 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 A O6 G 50 R G 50 1_555 A N4 C 64 R C 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 A N3 C 51 R C 51 1_555 A N1 G 63 R G 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 A N4 C 51 R C 51 1_555 A O6 G 63 R G 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 A O2 C 51 R C 51 1_555 A N2 G 63 R G 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 A N1 G 52 R G 52 1_555 A N3 C 62 R C 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 A N2 G 52 R G 52 1_555 A O2 C 62 R C 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 A O6 G 52 R G 52 1_555 A N4 C 62 R C 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 A N1 G 53 R G 53 1_555 A N3 C 61 R C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 A N2 G 53 R G 53 1_555 A O2 C 61 R C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog53 A O6 G 53 R G 53 1_555 A N4 C 61 R C 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog54 A N3 U 54 R U 54 1_555 A N7 A 58 R A 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED HOOGSTEEN' hydrog55 A O2 U 54 R U 54 1_555 A N6 A 58 R A 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 244 n n C1 C2 GOL sing 245 n n C1 H11 GOL sing 246 n n C1 H12 GOL sing 247 n n O1 HO1 GOL sing 248 n n C2 O2 GOL sing 249 n n C2 C3 GOL sing 250 n n C2 H2 GOL sing 251 n n O2 HO2 GOL sing 252 n n C3 O3 GOL sing 253 n n C3 H31 GOL sing 254 n n C3 H32 GOL sing 255 n n O3 HO3 GOL sing 256 n n # _atom_sites.entry_id 2FK6 _atom_sites.fract_transf_matrix[1][1] 0.005762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 401 ZN ZN . D 4 MES A 1 801 801 MES MES . E 5 GOL A 1 501 501 GOL GOL . F 6 HOH R 1 80 11 HOH HOH . G 6 HOH A 1 802 1 HOH HOH . G 6 HOH A 2 803 2 HOH HOH . G 6 HOH A 3 804 3 HOH HOH . G 6 HOH A 4 805 4 HOH HOH . G 6 HOH A 5 806 5 HOH HOH . G 6 HOH A 6 807 6 HOH HOH . G 6 HOH A 7 808 7 HOH HOH . G 6 HOH A 8 809 8 HOH HOH . G 6 HOH A 9 810 9 HOH HOH . G 6 HOH A 10 811 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 179.9 3.483 32.808 1 71.41 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . E 5 179.451 4.615 31.757 1 69.17 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . E 5 179.145 3.031 33.902 1 72.2 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . E 5 178.095 3.834 34.134 1 73.87 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . E 5 179.633 2.015 34.34 1 71.44 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . E 5 180.607 0.811 34.519 1 71.09 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #