data_2FL2 # _model_server_result.job_id FBisQTkMljqZpk_xbFAbkQ _model_server_result.datetime_utc '2024-10-22 03:36:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fl2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 2FL2 # _exptl.entry_id 2FL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FL2 _cell.length_a 68.8 _cell.length_b 79.5 _cell.length_c 159 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 111 A THR 112 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc2 D O3B ADP . A ADP 601 1_555 C MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 C MG MG . A MG 603 1_555 I O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 B OG1 THR 111 B THR 112 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 G O3B ADP . B ADP 600 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2FL2 _atom_sites.fract_transf_matrix[1][1] 0.014535 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 603 603 MG MG . D 3 ADP A 1 601 601 ADP ADP . E 4 N4T A 1 604 604 N4T N4T . F 2 MG B 1 602 602 MG MG . G 3 ADP B 1 600 600 ADP ADP . H 4 N4T B 1 605 605 N4T N4T . I 5 HOH A 1 605 1 HOH HOH . I 5 HOH A 2 606 4 HOH HOH . I 5 HOH A 3 607 5 HOH HOH . I 5 HOH A 4 608 6 HOH HOH . I 5 HOH A 5 609 9 HOH HOH . I 5 HOH A 6 610 13 HOH HOH . I 5 HOH A 7 611 14 HOH HOH . I 5 HOH A 8 612 18 HOH HOH . I 5 HOH A 9 613 20 HOH HOH . I 5 HOH A 10 614 22 HOH HOH . I 5 HOH A 11 615 24 HOH HOH . I 5 HOH A 12 616 25 HOH HOH . I 5 HOH A 13 617 26 HOH HOH . I 5 HOH A 14 618 27 HOH HOH . I 5 HOH A 15 619 29 HOH HOH . I 5 HOH A 16 620 30 HOH HOH . I 5 HOH A 17 621 33 HOH HOH . I 5 HOH A 18 622 34 HOH HOH . I 5 HOH A 19 623 39 HOH HOH . I 5 HOH A 20 624 40 HOH HOH . I 5 HOH A 21 625 41 HOH HOH . I 5 HOH A 22 626 42 HOH HOH . I 5 HOH A 23 627 44 HOH HOH . I 5 HOH A 24 628 46 HOH HOH . I 5 HOH A 25 629 48 HOH HOH . I 5 HOH A 26 630 56 HOH HOH . I 5 HOH A 27 631 57 HOH HOH . I 5 HOH A 28 632 60 HOH HOH . I 5 HOH A 29 633 61 HOH HOH . I 5 HOH A 30 634 62 HOH HOH . I 5 HOH A 31 635 63 HOH HOH . I 5 HOH A 32 636 66 HOH HOH . I 5 HOH A 33 637 67 HOH HOH . I 5 HOH A 34 638 69 HOH HOH . I 5 HOH A 35 639 71 HOH HOH . I 5 HOH A 36 640 72 HOH HOH . I 5 HOH A 37 641 73 HOH HOH . I 5 HOH A 38 642 74 HOH HOH . I 5 HOH A 39 643 76 HOH HOH . I 5 HOH A 40 644 79 HOH HOH . I 5 HOH A 41 645 80 HOH HOH . I 5 HOH A 42 646 81 HOH HOH . I 5 HOH A 43 647 83 HOH HOH . I 5 HOH A 44 648 84 HOH HOH . I 5 HOH A 45 649 86 HOH HOH . I 5 HOH A 46 650 89 HOH HOH . I 5 HOH A 47 651 90 HOH HOH . I 5 HOH A 48 652 91 HOH HOH . I 5 HOH A 49 653 95 HOH HOH . I 5 HOH A 50 654 96 HOH HOH . I 5 HOH A 51 655 97 HOH HOH . I 5 HOH A 52 656 98 HOH HOH . I 5 HOH A 53 657 101 HOH HOH . I 5 HOH A 54 658 102 HOH HOH . I 5 HOH A 55 659 103 HOH HOH . I 5 HOH A 56 660 107 HOH HOH . I 5 HOH A 57 661 110 HOH HOH . I 5 HOH A 58 662 111 HOH HOH . I 5 HOH A 59 663 112 HOH HOH . I 5 HOH A 60 664 113 HOH HOH . I 5 HOH A 61 665 116 HOH HOH . I 5 HOH A 62 666 119 HOH HOH . I 5 HOH A 63 667 122 HOH HOH . I 5 HOH A 64 668 127 HOH HOH . I 5 HOH A 65 669 129 HOH HOH . J 5 HOH B 1 606 2 HOH HOH . J 5 HOH B 2 607 3 HOH HOH . J 5 HOH B 3 608 7 HOH HOH . J 5 HOH B 4 609 8 HOH HOH . J 5 HOH B 5 610 10 HOH HOH . J 5 HOH B 6 611 11 HOH HOH . J 5 HOH B 7 612 12 HOH HOH . J 5 HOH B 8 613 15 HOH HOH . J 5 HOH B 9 614 16 HOH HOH . J 5 HOH B 10 615 17 HOH HOH . J 5 HOH B 11 616 19 HOH HOH . J 5 HOH B 12 617 21 HOH HOH . J 5 HOH B 13 618 23 HOH HOH . J 5 HOH B 14 619 28 HOH HOH . J 5 HOH B 15 620 31 HOH HOH . J 5 HOH B 16 621 32 HOH HOH . J 5 HOH B 17 622 35 HOH HOH . J 5 HOH B 18 623 36 HOH HOH . J 5 HOH B 19 624 37 HOH HOH . J 5 HOH B 20 625 38 HOH HOH . J 5 HOH B 21 626 43 HOH HOH . J 5 HOH B 22 627 45 HOH HOH . J 5 HOH B 23 628 47 HOH HOH . J 5 HOH B 24 629 49 HOH HOH . J 5 HOH B 25 630 50 HOH HOH . J 5 HOH B 26 631 51 HOH HOH . J 5 HOH B 27 632 52 HOH HOH . J 5 HOH B 28 633 53 HOH HOH . J 5 HOH B 29 634 54 HOH HOH . J 5 HOH B 30 635 55 HOH HOH . J 5 HOH B 31 636 58 HOH HOH . J 5 HOH B 32 637 59 HOH HOH . J 5 HOH B 33 638 64 HOH HOH . J 5 HOH B 34 639 65 HOH HOH . J 5 HOH B 35 640 68 HOH HOH . J 5 HOH B 36 641 70 HOH HOH . J 5 HOH B 37 642 75 HOH HOH . J 5 HOH B 38 643 77 HOH HOH . J 5 HOH B 39 644 78 HOH HOH . J 5 HOH B 40 645 82 HOH HOH . J 5 HOH B 41 646 85 HOH HOH . J 5 HOH B 42 647 87 HOH HOH . J 5 HOH B 43 648 88 HOH HOH . J 5 HOH B 44 649 92 HOH HOH . J 5 HOH B 45 650 93 HOH HOH . J 5 HOH B 46 651 94 HOH HOH . J 5 HOH B 47 652 99 HOH HOH . J 5 HOH B 48 653 100 HOH HOH . J 5 HOH B 49 654 104 HOH HOH . J 5 HOH B 50 655 105 HOH HOH . J 5 HOH B 51 656 106 HOH HOH . J 5 HOH B 52 657 108 HOH HOH . J 5 HOH B 53 658 109 HOH HOH . J 5 HOH B 54 659 114 HOH HOH . J 5 HOH B 55 660 115 HOH HOH . J 5 HOH B 56 661 117 HOH HOH . J 5 HOH B 57 662 118 HOH HOH . J 5 HOH B 58 663 120 HOH HOH . J 5 HOH B 59 664 121 HOH HOH . J 5 HOH B 60 665 123 HOH HOH . J 5 HOH B 61 666 124 HOH HOH . J 5 HOH B 62 667 125 HOH HOH . J 5 HOH B 63 668 126 HOH HOH . J 5 HOH B 64 669 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . G 3 44.333 7.097 60.211 1 33.89 ? PB ADP 600 B 1 HETATM 2 O O1B ADP . . . G 3 44.956 7.758 61.403 1 34.19 ? O1B ADP 600 B 1 HETATM 3 O O2B ADP . . . G 3 43.789 5.634 60.55 1 34.29 ? O2B ADP 600 B 1 HETATM 4 O O3B ADP . . . G 3 43.221 7.908 59.693 1 32.95 ? O3B ADP 600 B 1 HETATM 5 P PA ADP . . . G 3 45.771 7.62 57.745 1 50.79 ? PA ADP 600 B 1 HETATM 6 O O1A ADP . . . G 3 44.883 7.152 56.668 1 50.31 ? O1A ADP 600 B 1 HETATM 7 O O2A ADP . . . G 3 45.615 9.077 57.928 1 52.35 ? O2A ADP 600 B 1 HETATM 8 O O3A ADP . . . G 3 45.428 6.861 59.099 1 42.68 ? O3A ADP 600 B 1 HETATM 9 O O5' ADP . . . G 3 47.279 7.341 57.309 1 51.59 ? O5' ADP 600 B 1 HETATM 10 C C5' ADP . . . G 3 48.333 6.562 57.906 1 50.71 ? C5' ADP 600 B 1 HETATM 11 C C4' ADP . . . G 3 49.547 6.711 56.911 1 51.94 ? C4' ADP 600 B 1 HETATM 12 O O4' ADP . . . G 3 49.595 5.477 56.199 1 52.42 ? O4' ADP 600 B 1 HETATM 13 C C3' ADP . . . G 3 49.398 7.812 55.818 1 51.52 ? C3' ADP 600 B 1 HETATM 14 O O3' ADP . . . G 3 50.597 8.582 55.658 1 53.32 ? O3' ADP 600 B 1 HETATM 15 C C2' ADP . . . G 3 48.995 7.096 54.525 1 51.48 ? C2' ADP 600 B 1 HETATM 16 O O2' ADP . . . G 3 49.482 7.739 53.326 1 50.17 ? O2' ADP 600 B 1 HETATM 17 C C1' ADP . . . G 3 49.497 5.67 54.762 1 52.65 ? C1' ADP 600 B 1 HETATM 18 N N9 ADP . . . G 3 48.567 4.599 54.229 1 52.84 ? N9 ADP 600 B 1 HETATM 19 C C8 ADP . . . G 3 47.59 3.992 54.957 1 51.52 ? C8 ADP 600 B 1 HETATM 20 N N7 ADP . . . G 3 46.967 3.095 54.214 1 51.59 ? N7 ADP 600 B 1 HETATM 21 C C5 ADP . . . G 3 47.521 3.079 53.022 1 52.42 ? C5 ADP 600 B 1 HETATM 22 C C6 ADP . . . G 3 47.295 2.356 51.831 1 53.21 ? C6 ADP 600 B 1 HETATM 23 N N6 ADP . . . G 3 46.333 1.426 51.784 1 53.36 ? N6 ADP 600 B 1 HETATM 24 N N1 ADP . . . G 3 48.094 2.595 50.703 1 53.8 ? N1 ADP 600 B 1 HETATM 25 C C2 ADP . . . G 3 49.098 3.532 50.695 1 53.61 ? C2 ADP 600 B 1 HETATM 26 N N3 ADP . . . G 3 49.318 4.251 51.85 1 53.8 ? N3 ADP 600 B 1 HETATM 27 C C4 ADP . . . G 3 48.574 4.046 53.013 1 52.99 ? C4 ADP 600 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #