data_2FM2 # _model_server_result.job_id fRglvsxmEtS67knof2SgEw _model_server_result.datetime_utc '2024-11-08 22:20:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":800}' # _entry.id 2FM2 # _exptl.entry_id 2FM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FM2 _cell.length_a 224.909 _cell.length_b 224.909 _cell.length_c 75.402 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 16 1_555 F S2 BME . A BME 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale2 A OG SER 150 A SER 139 1_555 G C33 3BC . A 3BC 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? metalc ? metalc1 A SG CYS 108 A CYS 97 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A SG CYS 110 A CYS 99 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 A SG CYS 156 A CYS 145 1_555 E ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 E ZN ZN . A ZN 200 1_555 I O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? metalc ? metalc5 C SG CYS 108 C CYS 97 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc6 C SG CYS 110 C CYS 99 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc7 C SG CYS 156 C CYS 145 1_555 H ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc8 H ZN ZN . C ZN 201 1_555 K O HOH . C HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 181 n n C1 O1 BME sing 182 n n C1 H11 BME sing 183 n n C1 H12 BME sing 184 n n C2 S2 BME sing 185 n n C2 H21 BME sing 186 n n C2 H22 BME sing 187 n n O1 HO1 BME sing 188 n n S2 HS2 BME sing 189 n n # _atom_sites.entry_id 2FM2 _atom_sites.fract_transf_matrix[1][1] 0.004446 _atom_sites.fract_transf_matrix[1][2] 0.002567 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013262 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 200 200 ZN ZN . F 4 BME A 1 800 800 BME BME . G 5 3BC A 1 900 900 3BC INH . H 3 ZN C 1 201 200 ZN ZN . I 6 HOH A 1 301 301 HOH HOH . I 6 HOH A 2 304 304 HOH HOH . I 6 HOH A 3 306 306 HOH HOH . I 6 HOH A 4 309 309 HOH HOH . I 6 HOH A 5 310 310 HOH HOH . I 6 HOH A 6 316 316 HOH HOH . I 6 HOH A 7 323 323 HOH HOH . I 6 HOH A 8 325 325 HOH HOH . I 6 HOH A 9 326 326 HOH HOH . I 6 HOH A 10 328 328 HOH HOH . I 6 HOH A 11 329 329 HOH HOH . I 6 HOH A 12 330 330 HOH HOH . I 6 HOH A 13 332 332 HOH HOH . I 6 HOH A 14 333 333 HOH HOH . I 6 HOH A 15 334 334 HOH HOH . I 6 HOH A 16 338 338 HOH HOH . I 6 HOH A 17 340 340 HOH HOH . I 6 HOH A 18 342 342 HOH HOH . I 6 HOH A 19 343 343 HOH HOH . I 6 HOH A 20 344 344 HOH HOH . I 6 HOH A 21 345 345 HOH HOH . I 6 HOH A 22 348 348 HOH HOH . I 6 HOH A 23 351 351 HOH HOH . I 6 HOH A 24 353 353 HOH HOH . I 6 HOH A 25 358 358 HOH HOH . I 6 HOH A 26 359 359 HOH HOH . I 6 HOH A 27 361 361 HOH HOH . I 6 HOH A 28 364 364 HOH HOH . I 6 HOH A 29 365 365 HOH HOH . I 6 HOH A 30 366 366 HOH HOH . I 6 HOH A 31 369 369 HOH HOH . I 6 HOH A 32 371 371 HOH HOH . I 6 HOH A 33 375 375 HOH HOH . I 6 HOH A 34 377 377 HOH HOH . I 6 HOH A 35 379 379 HOH HOH . I 6 HOH A 36 382 382 HOH HOH . I 6 HOH A 37 383 383 HOH HOH . I 6 HOH A 38 385 385 HOH HOH . I 6 HOH A 39 386 386 HOH HOH . I 6 HOH A 40 389 389 HOH HOH . I 6 HOH A 41 391 391 HOH HOH . I 6 HOH A 42 392 392 HOH HOH . I 6 HOH A 43 400 400 HOH HOH . I 6 HOH A 44 402 402 HOH HOH . I 6 HOH A 45 404 404 HOH HOH . I 6 HOH A 46 405 405 HOH HOH . I 6 HOH A 47 406 406 HOH HOH . I 6 HOH A 48 408 408 HOH HOH . I 6 HOH A 49 409 409 HOH HOH . I 6 HOH A 50 412 412 HOH HOH . I 6 HOH A 51 413 413 HOH HOH . I 6 HOH A 52 414 414 HOH HOH . I 6 HOH A 53 418 418 HOH HOH . I 6 HOH A 54 420 420 HOH HOH . I 6 HOH A 55 422 422 HOH HOH . I 6 HOH A 56 425 425 HOH HOH . I 6 HOH A 57 426 426 HOH HOH . I 6 HOH A 58 427 427 HOH HOH . I 6 HOH A 59 428 428 HOH HOH . I 6 HOH A 60 429 429 HOH HOH . I 6 HOH A 61 436 436 HOH HOH . I 6 HOH A 62 437 437 HOH HOH . I 6 HOH A 63 440 440 HOH HOH . I 6 HOH A 64 441 441 HOH HOH . I 6 HOH A 65 442 442 HOH HOH . I 6 HOH A 66 443 443 HOH HOH . I 6 HOH A 67 444 444 HOH HOH . I 6 HOH A 68 445 445 HOH HOH . I 6 HOH A 69 446 446 HOH HOH . I 6 HOH A 70 447 447 HOH HOH . I 6 HOH A 71 448 448 HOH HOH . I 6 HOH A 72 449 449 HOH HOH . I 6 HOH A 73 450 450 HOH HOH . I 6 HOH A 74 451 451 HOH HOH . I 6 HOH A 75 452 452 HOH HOH . J 6 HOH B 1 317 317 HOH HOH . J 6 HOH B 2 324 324 HOH HOH . J 6 HOH B 3 335 335 HOH HOH . J 6 HOH B 4 355 355 HOH HOH . J 6 HOH B 5 367 367 HOH HOH . J 6 HOH B 6 397 397 HOH HOH . J 6 HOH B 7 419 419 HOH HOH . J 6 HOH B 8 435 435 HOH HOH . K 6 HOH C 1 300 300 HOH HOH . K 6 HOH C 2 303 303 HOH HOH . K 6 HOH C 3 305 305 HOH HOH . K 6 HOH C 4 308 308 HOH HOH . K 6 HOH C 5 312 312 HOH HOH . K 6 HOH C 6 313 313 HOH HOH . K 6 HOH C 7 314 314 HOH HOH . K 6 HOH C 8 315 315 HOH HOH . K 6 HOH C 9 319 319 HOH HOH . K 6 HOH C 10 320 320 HOH HOH . K 6 HOH C 11 322 322 HOH HOH . K 6 HOH C 12 327 327 HOH HOH . K 6 HOH C 13 331 331 HOH HOH . K 6 HOH C 14 336 336 HOH HOH . K 6 HOH C 15 337 337 HOH HOH . K 6 HOH C 16 339 339 HOH HOH . K 6 HOH C 17 341 341 HOH HOH . K 6 HOH C 18 346 346 HOH HOH . K 6 HOH C 19 347 347 HOH HOH . K 6 HOH C 20 349 349 HOH HOH . K 6 HOH C 21 350 350 HOH HOH . K 6 HOH C 22 352 352 HOH HOH . K 6 HOH C 23 356 356 HOH HOH . K 6 HOH C 24 357 357 HOH HOH . K 6 HOH C 25 360 360 HOH HOH . K 6 HOH C 26 362 362 HOH HOH . K 6 HOH C 27 363 363 HOH HOH . K 6 HOH C 28 368 368 HOH HOH . K 6 HOH C 29 370 370 HOH HOH . K 6 HOH C 30 372 372 HOH HOH . K 6 HOH C 31 373 373 HOH HOH . K 6 HOH C 32 374 374 HOH HOH . K 6 HOH C 33 376 376 HOH HOH . K 6 HOH C 34 378 378 HOH HOH . K 6 HOH C 35 380 380 HOH HOH . K 6 HOH C 36 381 381 HOH HOH . K 6 HOH C 37 384 384 HOH HOH . K 6 HOH C 38 387 387 HOH HOH . K 6 HOH C 39 388 388 HOH HOH . K 6 HOH C 40 390 390 HOH HOH . K 6 HOH C 41 393 393 HOH HOH . K 6 HOH C 42 394 394 HOH HOH . K 6 HOH C 43 395 395 HOH HOH . K 6 HOH C 44 396 396 HOH HOH . K 6 HOH C 45 398 398 HOH HOH . K 6 HOH C 46 399 399 HOH HOH . K 6 HOH C 47 401 401 HOH HOH . K 6 HOH C 48 403 403 HOH HOH . K 6 HOH C 49 407 407 HOH HOH . K 6 HOH C 50 410 410 HOH HOH . K 6 HOH C 51 411 411 HOH HOH . K 6 HOH C 52 415 415 HOH HOH . K 6 HOH C 53 416 416 HOH HOH . K 6 HOH C 54 417 417 HOH HOH . K 6 HOH C 55 421 421 HOH HOH . K 6 HOH C 56 423 423 HOH HOH . K 6 HOH C 57 424 424 HOH HOH . K 6 HOH C 58 430 430 HOH HOH . K 6 HOH C 59 431 431 HOH HOH . K 6 HOH C 60 432 432 HOH HOH . K 6 HOH C 61 433 433 HOH HOH . K 6 HOH C 62 434 434 HOH HOH . K 6 HOH C 63 438 438 HOH HOH . K 6 HOH C 64 439 439 HOH HOH . K 6 HOH C 65 453 453 HOH HOH . L 6 HOH D 1 302 302 HOH HOH . L 6 HOH D 2 307 307 HOH HOH . L 6 HOH D 3 311 311 HOH HOH . L 6 HOH D 4 318 318 HOH HOH . L 6 HOH D 5 321 321 HOH HOH . L 6 HOH D 6 354 354 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 213.413 -2.068 52.609 1 65.98 ? C1 BME 800 A 1 HETATM 2 C C2 BME . . . F 4 213.593 -0.757 53.378 1 59.42 ? C2 BME 800 A 1 HETATM 3 O O1 BME . . . F 4 212.931 -2.073 51.249 1 70.11 ? O1 BME 800 A 1 HETATM 4 S S2 BME . . . F 4 214.27 -0.934 55.059 1 52.04 ? S2 BME 800 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #