data_2FN7 # _model_server_result.job_id g7JhJ05safeqeZySePI0tg _model_server_result.datetime_utc '2024-11-25 03:58:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 2FN7 # _exptl.entry_id 2FN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FN7 _cell.length_a 95.47 _cell.length_b 95.47 _cell.length_c 186.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 186.04 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 261 n n PA O2A NAD sing 262 n n PA O5B NAD sing 263 n n PA O3 NAD sing 264 n n O2A HOA2 NAD sing 265 n n O5B C5B NAD sing 266 n n C5B C4B NAD sing 267 n n C5B H51A NAD sing 268 n n C5B H52A NAD sing 269 n n C4B O4B NAD sing 270 n n C4B C3B NAD sing 271 n n C4B H4B NAD sing 272 n n O4B C1B NAD sing 273 n n C3B O3B NAD sing 274 n n C3B C2B NAD sing 275 n n C3B H3B NAD sing 276 n n O3B HO3A NAD sing 277 n n C2B O2B NAD sing 278 n n C2B C1B NAD sing 279 n n C2B H2B NAD sing 280 n n O2B HO2A NAD sing 281 n n C1B N9A NAD sing 282 n n C1B H1B NAD sing 283 n n N9A C8A NAD sing 284 n y N9A C4A NAD sing 285 n y C8A N7A NAD doub 286 n y C8A H8A NAD sing 287 n n N7A C5A NAD sing 288 n y C5A C6A NAD sing 289 n y C5A C4A NAD doub 290 n y C6A N6A NAD sing 291 n n C6A N1A NAD doub 292 n y N6A H61A NAD sing 293 n n N6A H62A NAD sing 294 n n N1A C2A NAD sing 295 n y C2A N3A NAD doub 296 n y C2A H2A NAD sing 297 n n N3A C4A NAD sing 298 n y O3 PN NAD sing 299 n n PN O1N NAD doub 300 n n PN O2N NAD sing 301 n n PN O5D NAD sing 302 n n O5D C5D NAD sing 303 n n C5D C4D NAD sing 304 n n C5D H51N NAD sing 305 n n C5D H52N NAD sing 306 n n C4D O4D NAD sing 307 n n C4D C3D NAD sing 308 n n C4D H4D NAD sing 309 n n O4D C1D NAD sing 310 n n C3D O3D NAD sing 311 n n C3D C2D NAD sing 312 n n C3D H3D NAD sing 313 n n O3D HO3N NAD sing 314 n n C2D O2D NAD sing 315 n n C2D C1D NAD sing 316 n n C2D H2D NAD sing 317 n n O2D HO2N NAD sing 318 n n C1D N1N NAD sing 319 n n C1D H1D NAD sing 320 n n N1N C2N NAD sing 321 n y N1N C6N NAD doub 322 n y C2N C3N NAD doub 323 n y C2N H2N NAD sing 324 n n C3N C7N NAD sing 325 n n C3N C4N NAD sing 326 n y C7N O7N NAD doub 327 n n C7N N7N NAD sing 328 n n N7N H71N NAD sing 329 n n N7N H72N NAD sing 330 n n C4N C5N NAD doub 331 n y C4N H4N NAD sing 332 n n C5N C6N NAD sing 333 n y C5N H5N NAD sing 334 n n C6N H6N NAD sing 335 n n # _atom_sites.entry_id 2FN7 _atom_sites.fract_transf_matrix[1][1] 0.010474 _atom_sites.fract_transf_matrix[1][2] 0.006047 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 3 LAC A 1 364 364 LAC LAC . E 4 GOL A 1 600 600 GOL GOL . F 4 GOL A 1 601 601 GOL GOL . G 2 NAD B 1 402 402 NAD NAD . H 4 GOL B 1 603 603 GOL GOL . I 5 HOH A 1 602 1 HOH HOH . I 5 HOH A 2 603 2 HOH HOH . I 5 HOH A 3 604 5 HOH HOH . I 5 HOH A 4 605 7 HOH HOH . I 5 HOH A 5 606 8 HOH HOH . I 5 HOH A 6 607 9 HOH HOH . I 5 HOH A 7 608 10 HOH HOH . I 5 HOH A 8 609 12 HOH HOH . I 5 HOH A 9 610 14 HOH HOH . I 5 HOH A 10 611 17 HOH HOH . I 5 HOH A 11 612 18 HOH HOH . I 5 HOH A 12 613 19 HOH HOH . I 5 HOH A 13 614 20 HOH HOH . I 5 HOH A 14 615 21 HOH HOH . I 5 HOH A 15 616 22 HOH HOH . I 5 HOH A 16 617 23 HOH HOH . I 5 HOH A 17 618 25 HOH HOH . I 5 HOH A 18 619 26 HOH HOH . I 5 HOH A 19 620 27 HOH HOH . I 5 HOH A 20 621 29 HOH HOH . I 5 HOH A 21 622 30 HOH HOH . I 5 HOH A 22 623 31 HOH HOH . I 5 HOH A 23 624 34 HOH HOH . I 5 HOH A 24 625 36 HOH HOH . I 5 HOH A 25 626 38 HOH HOH . I 5 HOH A 26 627 40 HOH HOH . I 5 HOH A 27 628 42 HOH HOH . I 5 HOH A 28 629 43 HOH HOH . I 5 HOH A 29 630 44 HOH HOH . I 5 HOH A 30 631 46 HOH HOH . I 5 HOH A 31 632 48 HOH HOH . I 5 HOH A 32 633 49 HOH HOH . I 5 HOH A 33 634 52 HOH HOH . I 5 HOH A 34 635 56 HOH HOH . I 5 HOH A 35 636 57 HOH HOH . I 5 HOH A 36 637 58 HOH HOH . I 5 HOH A 37 638 59 HOH HOH . I 5 HOH A 38 639 61 HOH HOH . I 5 HOH A 39 640 62 HOH HOH . I 5 HOH A 40 641 66 HOH HOH . I 5 HOH A 41 642 67 HOH HOH . I 5 HOH A 42 643 69 HOH HOH . I 5 HOH A 43 644 70 HOH HOH . I 5 HOH A 44 645 71 HOH HOH . I 5 HOH A 45 646 73 HOH HOH . I 5 HOH A 46 647 74 HOH HOH . I 5 HOH A 47 648 75 HOH HOH . I 5 HOH A 48 649 76 HOH HOH . I 5 HOH A 49 650 77 HOH HOH . I 5 HOH A 50 651 81 HOH HOH . I 5 HOH A 51 652 82 HOH HOH . I 5 HOH A 52 653 83 HOH HOH . I 5 HOH A 53 654 85 HOH HOH . I 5 HOH A 54 655 86 HOH HOH . I 5 HOH A 55 656 87 HOH HOH . I 5 HOH A 56 657 88 HOH HOH . I 5 HOH A 57 658 89 HOH HOH . I 5 HOH A 58 659 90 HOH HOH . I 5 HOH A 59 660 91 HOH HOH . I 5 HOH A 60 661 92 HOH HOH . I 5 HOH A 61 662 94 HOH HOH . I 5 HOH A 62 663 95 HOH HOH . I 5 HOH A 63 664 96 HOH HOH . I 5 HOH A 64 665 97 HOH HOH . I 5 HOH A 65 666 99 HOH HOH . I 5 HOH A 66 667 101 HOH HOH . I 5 HOH A 67 668 102 HOH HOH . I 5 HOH A 68 669 104 HOH HOH . I 5 HOH A 69 670 105 HOH HOH . I 5 HOH A 70 671 106 HOH HOH . I 5 HOH A 71 672 107 HOH HOH . I 5 HOH A 72 673 108 HOH HOH . I 5 HOH A 73 674 109 HOH HOH . I 5 HOH A 74 675 110 HOH HOH . I 5 HOH A 75 676 111 HOH HOH . I 5 HOH A 76 677 113 HOH HOH . I 5 HOH A 77 678 115 HOH HOH . I 5 HOH A 78 679 118 HOH HOH . I 5 HOH A 79 680 119 HOH HOH . I 5 HOH A 80 681 123 HOH HOH . I 5 HOH A 81 682 124 HOH HOH . I 5 HOH A 82 683 125 HOH HOH . I 5 HOH A 83 684 126 HOH HOH . I 5 HOH A 84 685 127 HOH HOH . I 5 HOH A 85 686 130 HOH HOH . I 5 HOH A 86 687 132 HOH HOH . I 5 HOH A 87 688 133 HOH HOH . I 5 HOH A 88 689 134 HOH HOH . I 5 HOH A 89 690 138 HOH HOH . I 5 HOH A 90 691 139 HOH HOH . I 5 HOH A 91 692 140 HOH HOH . I 5 HOH A 92 693 141 HOH HOH . I 5 HOH A 93 694 142 HOH HOH . J 5 HOH B 1 604 4 HOH HOH . J 5 HOH B 2 605 6 HOH HOH . J 5 HOH B 3 606 11 HOH HOH . J 5 HOH B 4 607 13 HOH HOH . J 5 HOH B 5 608 15 HOH HOH . J 5 HOH B 6 609 16 HOH HOH . J 5 HOH B 7 610 24 HOH HOH . J 5 HOH B 8 611 28 HOH HOH . J 5 HOH B 9 612 32 HOH HOH . J 5 HOH B 10 613 33 HOH HOH . J 5 HOH B 11 614 35 HOH HOH . J 5 HOH B 12 615 37 HOH HOH . J 5 HOH B 13 616 39 HOH HOH . J 5 HOH B 14 617 41 HOH HOH . J 5 HOH B 15 618 45 HOH HOH . J 5 HOH B 16 619 47 HOH HOH . J 5 HOH B 17 620 50 HOH HOH . J 5 HOH B 18 621 51 HOH HOH . J 5 HOH B 19 622 53 HOH HOH . J 5 HOH B 20 623 54 HOH HOH . J 5 HOH B 21 624 55 HOH HOH . J 5 HOH B 22 625 60 HOH HOH . J 5 HOH B 23 626 63 HOH HOH . J 5 HOH B 24 627 64 HOH HOH . J 5 HOH B 25 628 65 HOH HOH . J 5 HOH B 26 629 68 HOH HOH . J 5 HOH B 27 630 72 HOH HOH . J 5 HOH B 28 631 78 HOH HOH . J 5 HOH B 29 632 79 HOH HOH . J 5 HOH B 30 633 80 HOH HOH . J 5 HOH B 31 634 84 HOH HOH . J 5 HOH B 32 635 93 HOH HOH . J 5 HOH B 33 636 98 HOH HOH . J 5 HOH B 34 637 100 HOH HOH . J 5 HOH B 35 638 103 HOH HOH . J 5 HOH B 36 639 112 HOH HOH . J 5 HOH B 37 640 114 HOH HOH . J 5 HOH B 38 641 116 HOH HOH . J 5 HOH B 39 642 117 HOH HOH . J 5 HOH B 40 643 120 HOH HOH . J 5 HOH B 41 644 121 HOH HOH . J 5 HOH B 42 645 122 HOH HOH . J 5 HOH B 43 646 128 HOH HOH . J 5 HOH B 44 647 129 HOH HOH . J 5 HOH B 45 648 131 HOH HOH . J 5 HOH B 46 649 143 HOH HOH . J 5 HOH B 47 650 144 HOH HOH . J 5 HOH B 48 651 145 HOH HOH . J 5 HOH B 49 652 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 0.878 39.739 72.269 1 35.53 ? PA NAD 402 B 1 HETATM 2 O O1A NAD . . . G 2 2.186 40.353 72.137 1 36.1 ? O1A NAD 402 B 1 HETATM 3 O O2A NAD . . . G 2 -0.08 40.075 71.176 1 40.71 ? O2A NAD 402 B 1 HETATM 4 O O5B NAD . . . G 2 0.898 38.195 72.417 1 34.08 ? O5B NAD 402 B 1 HETATM 5 C C5B NAD . . . G 2 -0.248 37.346 72.443 1 35.46 ? C5B NAD 402 B 1 HETATM 6 C C4B NAD . . . G 2 0.267 36.023 71.812 1 37.39 ? C4B NAD 402 B 1 HETATM 7 O O4B NAD . . . G 2 -0.901 35.185 71.681 1 39.49 ? O4B NAD 402 B 1 HETATM 8 C C3B NAD . . . G 2 0.84 36.125 70.33 1 38.98 ? C3B NAD 402 B 1 HETATM 9 O O3B NAD . . . G 2 2.176 35.717 70.28 1 37.4 ? O3B NAD 402 B 1 HETATM 10 C C2B NAD . . . G 2 -0.109 35.252 69.556 1 39.16 ? C2B NAD 402 B 1 HETATM 11 O O2B NAD . . . G 2 0.355 34.582 68.38 1 39.03 ? O2B NAD 402 B 1 HETATM 12 C C1B NAD . . . G 2 -0.577 34.324 70.594 1 38.38 ? C1B NAD 402 B 1 HETATM 13 N N9A NAD . . . G 2 -1.743 33.543 70.313 1 41.1 ? N9A NAD 402 B 1 HETATM 14 C C8A NAD . . . G 2 -2.925 33.624 69.667 1 39.4 ? C8A NAD 402 B 1 HETATM 15 N N7A NAD . . . G 2 -3.858 32.812 69.509 1 40.74 ? N7A NAD 402 B 1 HETATM 16 C C5A NAD . . . G 2 -3.248 31.847 70.208 1 39.37 ? C5A NAD 402 B 1 HETATM 17 C C6A NAD . . . G 2 -3.682 30.508 70.513 1 40.54 ? C6A NAD 402 B 1 HETATM 18 N N6A NAD . . . G 2 -4.837 30.036 70.092 1 38.55 ? N6A NAD 402 B 1 HETATM 19 N N1A NAD . . . G 2 -2.826 29.717 71.267 1 41.31 ? N1A NAD 402 B 1 HETATM 20 C C2A NAD . . . G 2 -1.602 30.242 71.683 1 42.08 ? C2A NAD 402 B 1 HETATM 21 N N3A NAD . . . G 2 -1.118 31.464 71.448 1 42.17 ? N3A NAD 402 B 1 HETATM 22 C C4A NAD . . . G 2 -1.985 32.225 70.711 1 39.92 ? C4A NAD 402 B 1 HETATM 23 O O3 NAD . . . G 2 0.147 40.213 73.669 1 34.16 ? O3 NAD 402 B 1 HETATM 24 P PN NAD . . . G 2 0.829 40.59 75.062 1 34.33 ? PN NAD 402 B 1 HETATM 25 O O1N NAD . . . G 2 1.251 41.951 75.015 1 31.41 ? O1N NAD 402 B 1 HETATM 26 O O2N NAD . . . G 2 1.826 39.485 75.358 1 33.54 ? O2N NAD 402 B 1 HETATM 27 O O5D NAD . . . G 2 -0.413 40.441 76.1 1 33.49 ? O5D NAD 402 B 1 HETATM 28 C C5D NAD . . . G 2 -0.999 39.165 76.329 1 37.13 ? C5D NAD 402 B 1 HETATM 29 C C4D NAD . . . G 2 -2.356 39.305 77.09 1 39.22 ? C4D NAD 402 B 1 HETATM 30 O O4D NAD . . . G 2 -2.112 39.922 78.425 1 37.91 ? O4D NAD 402 B 1 HETATM 31 C C3D NAD . . . G 2 -3.406 40.272 76.425 1 39.22 ? C3D NAD 402 B 1 HETATM 32 O O3D NAD . . . G 2 -4.71 39.779 76.636 1 38.86 ? O3D NAD 402 B 1 HETATM 33 C C2D NAD . . . G 2 -3.109 41.593 77.15 1 38.1 ? C2D NAD 402 B 1 HETATM 34 O O2D NAD . . . G 2 -4.231 42.47 76.992 1 39.59 ? O2D NAD 402 B 1 HETATM 35 C C1D NAD . . . G 2 -2.935 41.084 78.542 1 36.81 ? C1D NAD 402 B 1 HETATM 36 N N1N NAD . . . G 2 -2.326 41.913 79.555 1 34.95 ? N1N NAD 402 B 1 HETATM 37 C C2N NAD . . . G 2 -2.879 41.6 80.812 1 34.64 ? C2N NAD 402 B 1 HETATM 38 C C3N NAD . . . G 2 -2.446 42.295 81.914 1 34.79 ? C3N NAD 402 B 1 HETATM 39 C C7N NAD . . . G 2 -2.951 42.048 83.344 1 36.3 ? C7N NAD 402 B 1 HETATM 40 O O7N NAD . . . G 2 -2.512 42.77 84.239 1 38.27 ? O7N NAD 402 B 1 HETATM 41 N N7N NAD . . . G 2 -3.665 40.89 83.52 1 36.91 ? N7N NAD 402 B 1 HETATM 42 C C4N NAD . . . G 2 -1.411 43.37 81.847 1 34.63 ? C4N NAD 402 B 1 HETATM 43 C C5N NAD . . . G 2 -0.901 43.608 80.529 1 35.55 ? C5N NAD 402 B 1 HETATM 44 C C6N NAD . . . G 2 -1.307 42.928 79.344 1 34.83 ? C6N NAD 402 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #