data_2FN7 # _model_server_result.job_id -qF6IGXKAlvXBLztIHZaxg _model_server_result.datetime_utc '2024-11-28 20:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 2FN7 # _exptl.entry_id 2FN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2FN7 _cell.length_a 95.47 _cell.length_b 95.47 _cell.length_c 186.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 186.04 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 2FN7 _atom_sites.fract_transf_matrix[1][1] 0.010474 _atom_sites.fract_transf_matrix[1][2] 0.006047 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 401 NAD NAD . D 3 LAC A 1 364 364 LAC LAC . E 4 GOL A 1 600 600 GOL GOL . F 4 GOL A 1 601 601 GOL GOL . G 2 NAD B 1 402 402 NAD NAD . H 4 GOL B 1 603 603 GOL GOL . I 5 HOH A 1 602 1 HOH HOH . I 5 HOH A 2 603 2 HOH HOH . I 5 HOH A 3 604 5 HOH HOH . I 5 HOH A 4 605 7 HOH HOH . I 5 HOH A 5 606 8 HOH HOH . I 5 HOH A 6 607 9 HOH HOH . I 5 HOH A 7 608 10 HOH HOH . I 5 HOH A 8 609 12 HOH HOH . I 5 HOH A 9 610 14 HOH HOH . I 5 HOH A 10 611 17 HOH HOH . I 5 HOH A 11 612 18 HOH HOH . I 5 HOH A 12 613 19 HOH HOH . I 5 HOH A 13 614 20 HOH HOH . I 5 HOH A 14 615 21 HOH HOH . I 5 HOH A 15 616 22 HOH HOH . I 5 HOH A 16 617 23 HOH HOH . I 5 HOH A 17 618 25 HOH HOH . I 5 HOH A 18 619 26 HOH HOH . I 5 HOH A 19 620 27 HOH HOH . I 5 HOH A 20 621 29 HOH HOH . I 5 HOH A 21 622 30 HOH HOH . I 5 HOH A 22 623 31 HOH HOH . I 5 HOH A 23 624 34 HOH HOH . I 5 HOH A 24 625 36 HOH HOH . I 5 HOH A 25 626 38 HOH HOH . I 5 HOH A 26 627 40 HOH HOH . I 5 HOH A 27 628 42 HOH HOH . I 5 HOH A 28 629 43 HOH HOH . I 5 HOH A 29 630 44 HOH HOH . I 5 HOH A 30 631 46 HOH HOH . I 5 HOH A 31 632 48 HOH HOH . I 5 HOH A 32 633 49 HOH HOH . I 5 HOH A 33 634 52 HOH HOH . I 5 HOH A 34 635 56 HOH HOH . I 5 HOH A 35 636 57 HOH HOH . I 5 HOH A 36 637 58 HOH HOH . I 5 HOH A 37 638 59 HOH HOH . I 5 HOH A 38 639 61 HOH HOH . I 5 HOH A 39 640 62 HOH HOH . I 5 HOH A 40 641 66 HOH HOH . I 5 HOH A 41 642 67 HOH HOH . I 5 HOH A 42 643 69 HOH HOH . I 5 HOH A 43 644 70 HOH HOH . I 5 HOH A 44 645 71 HOH HOH . I 5 HOH A 45 646 73 HOH HOH . I 5 HOH A 46 647 74 HOH HOH . I 5 HOH A 47 648 75 HOH HOH . I 5 HOH A 48 649 76 HOH HOH . I 5 HOH A 49 650 77 HOH HOH . I 5 HOH A 50 651 81 HOH HOH . I 5 HOH A 51 652 82 HOH HOH . I 5 HOH A 52 653 83 HOH HOH . I 5 HOH A 53 654 85 HOH HOH . I 5 HOH A 54 655 86 HOH HOH . I 5 HOH A 55 656 87 HOH HOH . I 5 HOH A 56 657 88 HOH HOH . I 5 HOH A 57 658 89 HOH HOH . I 5 HOH A 58 659 90 HOH HOH . I 5 HOH A 59 660 91 HOH HOH . I 5 HOH A 60 661 92 HOH HOH . I 5 HOH A 61 662 94 HOH HOH . I 5 HOH A 62 663 95 HOH HOH . I 5 HOH A 63 664 96 HOH HOH . I 5 HOH A 64 665 97 HOH HOH . I 5 HOH A 65 666 99 HOH HOH . I 5 HOH A 66 667 101 HOH HOH . I 5 HOH A 67 668 102 HOH HOH . I 5 HOH A 68 669 104 HOH HOH . I 5 HOH A 69 670 105 HOH HOH . I 5 HOH A 70 671 106 HOH HOH . I 5 HOH A 71 672 107 HOH HOH . I 5 HOH A 72 673 108 HOH HOH . I 5 HOH A 73 674 109 HOH HOH . I 5 HOH A 74 675 110 HOH HOH . I 5 HOH A 75 676 111 HOH HOH . I 5 HOH A 76 677 113 HOH HOH . I 5 HOH A 77 678 115 HOH HOH . I 5 HOH A 78 679 118 HOH HOH . I 5 HOH A 79 680 119 HOH HOH . I 5 HOH A 80 681 123 HOH HOH . I 5 HOH A 81 682 124 HOH HOH . I 5 HOH A 82 683 125 HOH HOH . I 5 HOH A 83 684 126 HOH HOH . I 5 HOH A 84 685 127 HOH HOH . I 5 HOH A 85 686 130 HOH HOH . I 5 HOH A 86 687 132 HOH HOH . I 5 HOH A 87 688 133 HOH HOH . I 5 HOH A 88 689 134 HOH HOH . I 5 HOH A 89 690 138 HOH HOH . I 5 HOH A 90 691 139 HOH HOH . I 5 HOH A 91 692 140 HOH HOH . I 5 HOH A 92 693 141 HOH HOH . I 5 HOH A 93 694 142 HOH HOH . J 5 HOH B 1 604 4 HOH HOH . J 5 HOH B 2 605 6 HOH HOH . J 5 HOH B 3 606 11 HOH HOH . J 5 HOH B 4 607 13 HOH HOH . J 5 HOH B 5 608 15 HOH HOH . J 5 HOH B 6 609 16 HOH HOH . J 5 HOH B 7 610 24 HOH HOH . J 5 HOH B 8 611 28 HOH HOH . J 5 HOH B 9 612 32 HOH HOH . J 5 HOH B 10 613 33 HOH HOH . J 5 HOH B 11 614 35 HOH HOH . J 5 HOH B 12 615 37 HOH HOH . J 5 HOH B 13 616 39 HOH HOH . J 5 HOH B 14 617 41 HOH HOH . J 5 HOH B 15 618 45 HOH HOH . J 5 HOH B 16 619 47 HOH HOH . J 5 HOH B 17 620 50 HOH HOH . J 5 HOH B 18 621 51 HOH HOH . J 5 HOH B 19 622 53 HOH HOH . J 5 HOH B 20 623 54 HOH HOH . J 5 HOH B 21 624 55 HOH HOH . J 5 HOH B 22 625 60 HOH HOH . J 5 HOH B 23 626 63 HOH HOH . J 5 HOH B 24 627 64 HOH HOH . J 5 HOH B 25 628 65 HOH HOH . J 5 HOH B 26 629 68 HOH HOH . J 5 HOH B 27 630 72 HOH HOH . J 5 HOH B 28 631 78 HOH HOH . J 5 HOH B 29 632 79 HOH HOH . J 5 HOH B 30 633 80 HOH HOH . J 5 HOH B 31 634 84 HOH HOH . J 5 HOH B 32 635 93 HOH HOH . J 5 HOH B 33 636 98 HOH HOH . J 5 HOH B 34 637 100 HOH HOH . J 5 HOH B 35 638 103 HOH HOH . J 5 HOH B 36 639 112 HOH HOH . J 5 HOH B 37 640 114 HOH HOH . J 5 HOH B 38 641 116 HOH HOH . J 5 HOH B 39 642 117 HOH HOH . J 5 HOH B 40 643 120 HOH HOH . J 5 HOH B 41 644 121 HOH HOH . J 5 HOH B 42 645 122 HOH HOH . J 5 HOH B 43 646 128 HOH HOH . J 5 HOH B 44 647 129 HOH HOH . J 5 HOH B 45 648 131 HOH HOH . J 5 HOH B 46 649 143 HOH HOH . J 5 HOH B 47 650 144 HOH HOH . J 5 HOH B 48 651 145 HOH HOH . J 5 HOH B 49 652 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 37.358 26.186 62.378 1 53.93 ? C1 GOL 600 A 1 HETATM 2 O O1 GOL . . . E 4 37.226 27.707 62.827 1 52.2 ? O1 GOL 600 A 1 HETATM 3 C C2 GOL . . . E 4 38.416 25.318 62.694 1 56.73 ? C2 GOL 600 A 1 HETATM 4 O O2 GOL . . . E 4 38.46 24.25 61.895 1 58.67 ? O2 GOL 600 A 1 HETATM 5 C C3 GOL . . . E 4 39.001 25.712 63.617 1 54.84 ? C3 GOL 600 A 1 HETATM 6 O O3 GOL . . . E 4 39.411 26.578 64.772 1 55.15 ? O3 GOL 600 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #