data_2FO4 # _model_server_result.job_id a2b2UA2w7LZnmqhzO_jEEw _model_server_result.datetime_utc '2024-12-02 11:32:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1004}' # _entry.id 2FO4 # _exptl.entry_id 2FO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FO4 _cell.length_a 135.26 _cell.length_b 87.89 _cell.length_c 45.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 H N N ? 7 I N N ? 7 J N N ? 7 K N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 C 1 NAG C 2 NAG 4 n D FUC 2 C 2 FUC C 3 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 86 A ASN 86 1_555 E C1 NAG . A NAG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A ND2 ASN 176 A ASN 176 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 D O6 NAG . C NAG 1 1_555 D C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 260 n n C1 H11 MPD sing 261 n n C1 H12 MPD sing 262 n n C1 H13 MPD sing 263 n n C2 O2 MPD sing 264 n n C2 CM MPD sing 265 n n C2 C3 MPD sing 266 n n O2 HO2 MPD sing 267 n n CM HM1 MPD sing 268 n n CM HM2 MPD sing 269 n n CM HM3 MPD sing 270 n n C3 C4 MPD sing 271 n n C3 H31 MPD sing 272 n n C3 H32 MPD sing 273 n n C4 O4 MPD sing 274 n n C4 C5 MPD sing 275 n n C4 H4 MPD sing 276 n n O4 HO4 MPD sing 277 n n C5 H51 MPD sing 278 n n C5 H52 MPD sing 279 n n C5 H53 MPD sing 280 n n # _atom_sites.entry_id 2FO4 _atom_sites.fract_transf_matrix[1][1] 0.007393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 900 1 NAG NAG . F 6 PO4 A 1 2001 1 PO4 PO4 . G 6 PO4 A 1 2002 2 PO4 PO4 . H 7 MPD A 1 1002 2 MPD MPD . I 7 MPD A 1 1004 4 MPD MPD . J 7 MPD B 1 1001 1 MPD MPD . K 7 MPD B 1 1003 3 MPD MPD . L 8 HOH A 1 2003 1 HOH TIP . L 8 HOH A 2 2004 2 HOH TIP . L 8 HOH A 3 2005 4 HOH TIP . L 8 HOH A 4 2006 5 HOH TIP . L 8 HOH A 5 2007 6 HOH TIP . L 8 HOH A 6 2008 8 HOH TIP . L 8 HOH A 7 2009 9 HOH TIP . L 8 HOH A 8 2010 10 HOH TIP . L 8 HOH A 9 2011 11 HOH TIP . L 8 HOH A 10 2012 12 HOH TIP . L 8 HOH A 11 2013 14 HOH TIP . L 8 HOH A 12 2014 16 HOH TIP . L 8 HOH A 13 2015 19 HOH TIP . L 8 HOH A 14 2016 20 HOH TIP . L 8 HOH A 15 2017 22 HOH TIP . L 8 HOH A 16 2018 24 HOH TIP . L 8 HOH A 17 2019 25 HOH TIP . L 8 HOH A 18 2020 27 HOH TIP . L 8 HOH A 19 2021 29 HOH TIP . L 8 HOH A 20 2022 30 HOH TIP . L 8 HOH A 21 2023 32 HOH TIP . L 8 HOH A 22 2024 33 HOH TIP . L 8 HOH A 23 2025 34 HOH TIP . L 8 HOH A 24 2026 35 HOH TIP . L 8 HOH A 25 2027 36 HOH TIP . L 8 HOH A 26 2028 37 HOH TIP . L 8 HOH A 27 2029 38 HOH TIP . L 8 HOH A 28 2030 39 HOH TIP . L 8 HOH A 29 2031 40 HOH TIP . L 8 HOH A 30 2032 41 HOH TIP . L 8 HOH A 31 2033 42 HOH TIP . L 8 HOH A 32 2034 43 HOH TIP . L 8 HOH A 33 2035 44 HOH TIP . L 8 HOH A 34 2036 46 HOH TIP . L 8 HOH A 35 2037 47 HOH TIP . L 8 HOH A 36 2038 48 HOH TIP . L 8 HOH A 37 2039 50 HOH TIP . L 8 HOH A 38 2040 51 HOH TIP . L 8 HOH A 39 2041 52 HOH TIP . L 8 HOH A 40 2042 54 HOH TIP . L 8 HOH A 41 2043 58 HOH TIP . L 8 HOH A 42 2044 60 HOH TIP . L 8 HOH A 43 2045 61 HOH TIP . L 8 HOH A 44 2046 62 HOH TIP . L 8 HOH A 45 2047 63 HOH TIP . L 8 HOH A 46 2048 65 HOH TIP . L 8 HOH A 47 2049 68 HOH TIP . L 8 HOH A 48 2050 70 HOH TIP . L 8 HOH A 49 2051 72 HOH TIP . L 8 HOH A 50 2052 73 HOH TIP . L 8 HOH A 51 2053 74 HOH TIP . L 8 HOH A 52 2054 75 HOH TIP . L 8 HOH A 53 2055 76 HOH TIP . L 8 HOH A 54 2056 78 HOH TIP . L 8 HOH A 55 2057 79 HOH TIP . L 8 HOH A 56 2058 80 HOH TIP . L 8 HOH A 57 2059 82 HOH TIP . L 8 HOH A 58 2060 84 HOH TIP . L 8 HOH A 59 2061 85 HOH TIP . L 8 HOH A 60 2062 86 HOH TIP . L 8 HOH A 61 2063 87 HOH TIP . L 8 HOH A 62 2064 88 HOH TIP . L 8 HOH A 63 2065 89 HOH TIP . L 8 HOH A 64 2066 90 HOH TIP . L 8 HOH A 65 2067 91 HOH TIP . L 8 HOH A 66 2068 92 HOH TIP . L 8 HOH A 67 2069 94 HOH TIP . L 8 HOH A 68 2070 95 HOH TIP . L 8 HOH A 69 2071 98 HOH TIP . L 8 HOH A 70 2072 99 HOH TIP . L 8 HOH A 71 2073 100 HOH TIP . L 8 HOH A 72 2074 101 HOH TIP . L 8 HOH A 73 2075 102 HOH TIP . L 8 HOH A 74 2076 103 HOH TIP . M 8 HOH B 1 1004 7 HOH TIP . M 8 HOH B 2 1005 13 HOH TIP . M 8 HOH B 3 1006 15 HOH TIP . M 8 HOH B 4 1007 18 HOH TIP . M 8 HOH B 5 1008 21 HOH TIP . M 8 HOH B 6 1009 23 HOH TIP . M 8 HOH B 7 1010 26 HOH TIP . M 8 HOH B 8 1011 28 HOH TIP . M 8 HOH B 9 1012 31 HOH TIP . M 8 HOH B 10 1013 45 HOH TIP . M 8 HOH B 11 1014 49 HOH TIP . M 8 HOH B 12 1015 53 HOH TIP . M 8 HOH B 13 1016 55 HOH TIP . M 8 HOH B 14 1017 56 HOH TIP . M 8 HOH B 15 1018 57 HOH TIP . M 8 HOH B 16 1019 64 HOH TIP . M 8 HOH B 17 1020 66 HOH TIP . M 8 HOH B 18 1021 67 HOH TIP . M 8 HOH B 19 1022 69 HOH TIP . M 8 HOH B 20 1023 71 HOH TIP . M 8 HOH B 21 1024 77 HOH TIP . M 8 HOH B 22 1025 81 HOH TIP . M 8 HOH B 23 1026 83 HOH TIP . M 8 HOH B 24 1027 96 HOH TIP . M 8 HOH B 25 1028 97 HOH TIP . N 8 HOH P 1 9 3 HOH TIP . N 8 HOH P 2 10 17 HOH TIP . N 8 HOH P 3 11 59 HOH TIP . N 8 HOH P 4 12 104 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . I 7 36.922 41.613 5.678 1 69.41 ? C1 MPD 1004 A 1 HETATM 2 C C2 MPD . . . I 7 37.304 42.702 6.689 1 69.3 ? C2 MPD 1004 A 1 HETATM 3 O O2 MPD . . . I 7 37.008 43.982 6.127 1 73.83 ? O2 MPD 1004 A 1 HETATM 4 C CM MPD . . . I 7 36.49 42.501 7.968 1 74.43 ? CM MPD 1004 A 1 HETATM 5 C C3 MPD . . . I 7 38.816 42.612 7.045 1 63.99 ? C3 MPD 1004 A 1 HETATM 6 C C4 MPD . . . I 7 39.726 42.813 5.815 1 63.24 ? C4 MPD 1004 A 1 HETATM 7 O O4 MPD . . . I 7 39.499 44.095 5.253 1 68.32 ? O4 MPD 1004 A 1 HETATM 8 C C5 MPD . . . I 7 41.195 42.707 6.208 1 47.66 ? C5 MPD 1004 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #