data_2FOI # _model_server_result.job_id 1gWd02bt-LMzVpY6l46ETw _model_server_result.datetime_utc '2024-12-28 10:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2foi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":451}' # _entry.id 2FOI # _exptl.entry_id 2FOI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FOI _cell.length_a 130.861 _cell.length_b 130.861 _cell.length_c 82.687 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 130.861 130.861 41.3435 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 276 n n PA O2A NAD sing 277 n n PA O5B NAD sing 278 n n PA O3 NAD sing 279 n n O2A HOA2 NAD sing 280 n n O5B C5B NAD sing 281 n n C5B C4B NAD sing 282 n n C5B H51A NAD sing 283 n n C5B H52A NAD sing 284 n n C4B O4B NAD sing 285 n n C4B C3B NAD sing 286 n n C4B H4B NAD sing 287 n n O4B C1B NAD sing 288 n n C3B O3B NAD sing 289 n n C3B C2B NAD sing 290 n n C3B H3B NAD sing 291 n n O3B HO3A NAD sing 292 n n C2B O2B NAD sing 293 n n C2B C1B NAD sing 294 n n C2B H2B NAD sing 295 n n O2B HO2A NAD sing 296 n n C1B N9A NAD sing 297 n n C1B H1B NAD sing 298 n n N9A C8A NAD sing 299 n y N9A C4A NAD sing 300 n y C8A N7A NAD doub 301 n y C8A H8A NAD sing 302 n n N7A C5A NAD sing 303 n y C5A C6A NAD sing 304 n y C5A C4A NAD doub 305 n y C6A N6A NAD sing 306 n n C6A N1A NAD doub 307 n y N6A H61A NAD sing 308 n n N6A H62A NAD sing 309 n n N1A C2A NAD sing 310 n y C2A N3A NAD doub 311 n y C2A H2A NAD sing 312 n n N3A C4A NAD sing 313 n y O3 PN NAD sing 314 n n PN O1N NAD doub 315 n n PN O2N NAD sing 316 n n PN O5D NAD sing 317 n n O5D C5D NAD sing 318 n n C5D C4D NAD sing 319 n n C5D H51N NAD sing 320 n n C5D H52N NAD sing 321 n n C4D O4D NAD sing 322 n n C4D C3D NAD sing 323 n n C4D H4D NAD sing 324 n n O4D C1D NAD sing 325 n n C3D O3D NAD sing 326 n n C3D C2D NAD sing 327 n n C3D H3D NAD sing 328 n n O3D HO3N NAD sing 329 n n C2D O2D NAD sing 330 n n C2D C1D NAD sing 331 n n C2D H2D NAD sing 332 n n O2D HO2N NAD sing 333 n n C1D N1N NAD sing 334 n n C1D H1D NAD sing 335 n n N1N C2N NAD sing 336 n y N1N C6N NAD doub 337 n y C2N C3N NAD doub 338 n y C2N H2N NAD sing 339 n n C3N C7N NAD sing 340 n n C3N C4N NAD sing 341 n y C7N O7N NAD doub 342 n n C7N N7N NAD sing 343 n n N7N H71N NAD sing 344 n n N7N H72N NAD sing 345 n n C4N C5N NAD doub 346 n y C4N H4N NAD sing 347 n n C5N C6N NAD sing 348 n y C5N H5N NAD sing 349 n n C6N H6N NAD sing 350 n n # _atom_sites.entry_id 2FOI _atom_sites.fract_transf_matrix[1][1] 0.007642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 450 450 NAD NAD . F 4 JPA A 1 500 500 JPA JPC . G 3 NAD B 1 451 450 NAD NAD . H 4 JPA B 1 501 500 JPA JPC . I 5 HOH A 1 8 8 HOH HOH . I 5 HOH A 2 10 10 HOH HOH . I 5 HOH A 3 12 12 HOH HOH . I 5 HOH A 4 14 14 HOH HOH . I 5 HOH A 5 15 15 HOH HOH . I 5 HOH A 6 17 17 HOH HOH . I 5 HOH A 7 22 22 HOH HOH . I 5 HOH A 8 23 23 HOH HOH . I 5 HOH A 9 24 24 HOH HOH . I 5 HOH A 10 25 25 HOH HOH . I 5 HOH A 11 28 28 HOH HOH . I 5 HOH A 12 29 29 HOH HOH . I 5 HOH A 13 30 30 HOH HOH . I 5 HOH A 14 31 31 HOH HOH . I 5 HOH A 15 32 32 HOH HOH . I 5 HOH A 16 33 33 HOH HOH . I 5 HOH A 17 34 34 HOH HOH . I 5 HOH A 18 35 35 HOH HOH . I 5 HOH A 19 36 36 HOH HOH . I 5 HOH A 20 37 37 HOH HOH . I 5 HOH A 21 40 40 HOH HOH . I 5 HOH A 22 41 41 HOH HOH . I 5 HOH A 23 42 42 HOH HOH . I 5 HOH A 24 44 44 HOH HOH . J 5 HOH B 1 1 1 HOH HOH . J 5 HOH B 2 3 3 HOH HOH . J 5 HOH B 3 4 4 HOH HOH . J 5 HOH B 4 5 5 HOH HOH . J 5 HOH B 5 6 6 HOH HOH . J 5 HOH B 6 9 9 HOH HOH . J 5 HOH B 7 11 11 HOH HOH . J 5 HOH B 8 13 13 HOH HOH . J 5 HOH B 9 18 18 HOH HOH . J 5 HOH B 10 21 21 HOH HOH . J 5 HOH B 11 45 45 HOH HOH . J 5 HOH B 12 46 46 HOH HOH . J 5 HOH B 13 47 47 HOH HOH . J 5 HOH B 14 48 48 HOH HOH . J 5 HOH B 15 49 49 HOH HOH . J 5 HOH B 16 50 50 HOH HOH . J 5 HOH B 17 51 51 HOH HOH . K 5 HOH C 1 2 2 HOH HOH . K 5 HOH C 2 7 7 HOH HOH . K 5 HOH C 3 16 16 HOH HOH . K 5 HOH C 4 19 19 HOH HOH . K 5 HOH C 5 20 20 HOH HOH . K 5 HOH C 6 26 26 HOH HOH . K 5 HOH C 7 27 27 HOH HOH . K 5 HOH C 8 38 38 HOH HOH . K 5 HOH C 9 39 39 HOH HOH . K 5 HOH C 10 52 52 HOH HOH . K 5 HOH C 11 53 53 HOH HOH . K 5 HOH C 12 54 54 HOH HOH . L 5 HOH D 1 43 43 HOH HOH . L 5 HOH D 2 55 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 3 7.836 98.617 32.07 1 37 ? PA NAD 451 B 1 HETATM 2 O O1A NAD . . . G 3 6.708 99.202 31.268 1 51.05 ? O1A NAD 451 B 1 HETATM 3 O O2A NAD . . . G 3 7.606 97.543 33.108 1 50.13 ? O2A NAD 451 B 1 HETATM 4 O O5B NAD . . . G 3 8.686 99.829 32.687 1 42.03 ? O5B NAD 451 B 1 HETATM 5 C C5B NAD . . . G 3 8.589 101.122 32.09 1 42.2 ? C5B NAD 451 B 1 HETATM 6 C C4B NAD . . . G 3 8.013 102.048 33.147 1 41.87 ? C4B NAD 451 B 1 HETATM 7 O O4B NAD . . . G 3 8.435 103.389 32.947 1 38.28 ? O4B NAD 451 B 1 HETATM 8 C C3B NAD . . . G 3 6.492 102.054 33.122 1 44.37 ? C3B NAD 451 B 1 HETATM 9 O O3B NAD . . . G 3 6.097 101.722 34.452 1 50.02 ? O3B NAD 451 B 1 HETATM 10 C C2B NAD . . . G 3 6.073 103.476 32.809 1 40.18 ? C2B NAD 451 B 1 HETATM 11 O O2B NAD . . . G 3 4.992 103.913 33.636 1 45.26 ? O2B NAD 451 B 1 HETATM 12 C C1B NAD . . . G 3 7.312 104.242 33.214 1 37.08 ? C1B NAD 451 B 1 HETATM 13 N N9A NAD . . . G 3 7.442 105.487 32.442 1 38.46 ? N9A NAD 451 B 1 HETATM 14 C C8A NAD . . . G 3 7.352 105.598 31.109 1 34.88 ? C8A NAD 451 B 1 HETATM 15 N N7A NAD . . . G 3 7.523 106.88 30.728 1 35.15 ? N7A NAD 451 B 1 HETATM 16 C C5A NAD . . . G 3 7.753 107.622 31.839 1 37.06 ? C5A NAD 451 B 1 HETATM 17 C C6A NAD . . . G 3 8.005 108.964 32.115 1 31.14 ? C6A NAD 451 B 1 HETATM 18 N N6A NAD . . . G 3 8.074 109.891 31.126 1 30.24 ? N6A NAD 451 B 1 HETATM 19 N N1A NAD . . . G 3 8.175 109.328 33.406 1 34.91 ? N1A NAD 451 B 1 HETATM 20 C C2A NAD . . . G 3 8.107 108.45 34.424 1 36.04 ? C2A NAD 451 B 1 HETATM 21 N N3A NAD . . . G 3 7.864 107.146 34.233 1 36.09 ? N3A NAD 451 B 1 HETATM 22 C C4A NAD . . . G 3 7.69 106.683 32.973 1 38.18 ? C4A NAD 451 B 1 HETATM 23 O O3 NAD . . . G 3 8.867 98.045 30.976 1 48.05 ? O3 NAD 451 B 1 HETATM 24 P PN NAD . . . G 3 10.332 97.473 31.315 1 29.81 ? PN NAD 451 B 1 HETATM 25 O O1N NAD . . . G 3 10.49 97.157 32.784 1 31.29 ? O1N NAD 451 B 1 HETATM 26 O O2N NAD . . . G 3 10.572 96.444 30.252 1 34.53 ? O2N NAD 451 B 1 HETATM 27 O O5D NAD . . . G 3 11.282 98.748 31.003 1 34.66 ? O5D NAD 451 B 1 HETATM 28 C C5D NAD . . . G 3 12.188 99.274 31.971 1 25.59 ? C5D NAD 451 B 1 HETATM 29 C C4D NAD . . . G 3 13.53 99.595 31.312 1 31.61 ? C4D NAD 451 B 1 HETATM 30 O O4D NAD . . . G 3 14.272 98.422 30.946 1 29.66 ? O4D NAD 451 B 1 HETATM 31 C C3D NAD . . . G 3 13.339 100.392 30.044 1 30.15 ? C3D NAD 451 B 1 HETATM 32 O O3D NAD . . . G 3 14.374 101.354 30.011 1 27.56 ? O3D NAD 451 B 1 HETATM 33 C C2D NAD . . . G 3 13.583 99.412 28.919 1 35.21 ? C2D NAD 451 B 1 HETATM 34 O O2D NAD . . . G 3 14.073 100.052 27.738 1 28.49 ? O2D NAD 451 B 1 HETATM 35 C C1D NAD . . . G 3 14.622 98.508 29.554 1 35.76 ? C1D NAD 451 B 1 HETATM 36 N N1N NAD . . . G 3 14.667 97.197 28.908 1 35.48 ? N1N NAD 451 B 1 HETATM 37 C C2N NAD . . . G 3 13.598 96.388 28.889 1 34.25 ? C2N NAD 451 B 1 HETATM 38 C C3N NAD . . . G 3 13.707 95.143 28.257 1 37.59 ? C3N NAD 451 B 1 HETATM 39 C C7N NAD . . . G 3 12.567 94.174 28.202 1 30.78 ? C7N NAD 451 B 1 HETATM 40 O O7N NAD . . . G 3 12.672 93.126 27.42 1 29.51 ? O7N NAD 451 B 1 HETATM 41 N N7N NAD . . . G 3 11.533 94.321 28.899 1 33.98 ? N7N NAD 451 B 1 HETATM 42 C C4N NAD . . . G 3 14.91 94.756 27.668 1 33.26 ? C4N NAD 451 B 1 HETATM 43 C C5N NAD . . . G 3 15.987 95.619 27.725 1 32.63 ? C5N NAD 451 B 1 HETATM 44 C C6N NAD . . . G 3 15.826 96.841 28.351 1 26.92 ? C6N NAD 451 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #