data_2FOM # _model_server_result.job_id MQf-cDR74-ej08XFhenqsg _model_server_result.datetime_utc '2024-11-27 02:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 2FOM # _exptl.entry_id 2FOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FOM _cell.length_a 61.307 _cell.length_b 61.109 _cell.length_c 113.877 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 56.9385 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 2FOM _atom_sites.fract_transf_matrix[1][1] 0.016311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016364 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008781 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CL B 1 201 201 CL CL . D 4 GOL B 1 202 202 GOL GOL . E 4 GOL B 1 203 203 GOL GOL . F 5 HOH A 1 105 1 HOH HOH . F 5 HOH A 2 106 8 HOH HOH . F 5 HOH A 3 107 11 HOH HOH . F 5 HOH A 4 108 12 HOH HOH . F 5 HOH A 5 109 16 HOH HOH . F 5 HOH A 6 110 23 HOH HOH . F 5 HOH A 7 111 24 HOH HOH . F 5 HOH A 8 112 26 HOH HOH . F 5 HOH A 9 113 29 HOH HOH . F 5 HOH A 10 114 30 HOH HOH . F 5 HOH A 11 115 32 HOH HOH . F 5 HOH A 12 116 34 HOH HOH . F 5 HOH A 13 117 36 HOH HOH . F 5 HOH A 14 118 37 HOH HOH . F 5 HOH A 15 119 38 HOH HOH . F 5 HOH A 16 120 40 HOH HOH . F 5 HOH A 17 121 46 HOH HOH . F 5 HOH A 18 122 51 HOH HOH . F 5 HOH A 19 123 67 HOH HOH . F 5 HOH A 20 124 70 HOH HOH . F 5 HOH A 21 125 74 HOH HOH . F 5 HOH A 22 126 78 HOH HOH . F 5 HOH A 23 127 79 HOH HOH . F 5 HOH A 24 128 82 HOH HOH . F 5 HOH A 25 129 86 HOH HOH . F 5 HOH A 26 130 87 HOH HOH . F 5 HOH A 27 131 88 HOH HOH . F 5 HOH A 28 132 89 HOH HOH . F 5 HOH A 29 133 91 HOH HOH . F 5 HOH A 30 134 93 HOH HOH . F 5 HOH A 31 135 94 HOH HOH . F 5 HOH A 32 136 96 HOH HOH . F 5 HOH A 33 137 99 HOH HOH . F 5 HOH A 34 138 113 HOH HOH . F 5 HOH A 35 139 114 HOH HOH . F 5 HOH A 36 140 115 HOH HOH . F 5 HOH A 37 141 119 HOH HOH . F 5 HOH A 38 142 129 HOH HOH . F 5 HOH A 39 143 134 HOH HOH . F 5 HOH A 40 144 136 HOH HOH . F 5 HOH A 41 145 141 HOH HOH . F 5 HOH A 42 146 145 HOH HOH . F 5 HOH A 43 147 146 HOH HOH . F 5 HOH A 44 148 149 HOH HOH . G 5 HOH B 1 204 2 HOH HOH . G 5 HOH B 2 205 3 HOH HOH . G 5 HOH B 3 206 4 HOH HOH . G 5 HOH B 4 207 5 HOH HOH . G 5 HOH B 5 208 6 HOH HOH . G 5 HOH B 6 209 7 HOH HOH . G 5 HOH B 7 210 9 HOH HOH . G 5 HOH B 8 211 10 HOH HOH . G 5 HOH B 9 212 13 HOH HOH . G 5 HOH B 10 213 14 HOH HOH . G 5 HOH B 11 214 15 HOH HOH . G 5 HOH B 12 215 17 HOH HOH . G 5 HOH B 13 216 18 HOH HOH . G 5 HOH B 14 217 19 HOH HOH . G 5 HOH B 15 218 20 HOH HOH . G 5 HOH B 16 219 21 HOH HOH . G 5 HOH B 17 220 22 HOH HOH . G 5 HOH B 18 221 25 HOH HOH . G 5 HOH B 19 222 27 HOH HOH . G 5 HOH B 20 223 28 HOH HOH . G 5 HOH B 21 224 31 HOH HOH . G 5 HOH B 22 225 33 HOH HOH . G 5 HOH B 23 226 35 HOH HOH . G 5 HOH B 24 227 39 HOH HOH . G 5 HOH B 25 228 41 HOH HOH . G 5 HOH B 26 229 42 HOH HOH . G 5 HOH B 27 230 43 HOH HOH . G 5 HOH B 28 231 44 HOH HOH . G 5 HOH B 29 232 45 HOH HOH . G 5 HOH B 30 233 47 HOH HOH . G 5 HOH B 31 234 48 HOH HOH . G 5 HOH B 32 235 49 HOH HOH . G 5 HOH B 33 236 50 HOH HOH . G 5 HOH B 34 237 52 HOH HOH . G 5 HOH B 35 238 53 HOH HOH . G 5 HOH B 36 239 54 HOH HOH . G 5 HOH B 37 240 55 HOH HOH . G 5 HOH B 38 241 56 HOH HOH . G 5 HOH B 39 242 57 HOH HOH . G 5 HOH B 40 243 58 HOH HOH . G 5 HOH B 41 244 59 HOH HOH . G 5 HOH B 42 245 60 HOH HOH . G 5 HOH B 43 246 61 HOH HOH . G 5 HOH B 44 247 62 HOH HOH . G 5 HOH B 45 248 63 HOH HOH . G 5 HOH B 46 249 64 HOH HOH . G 5 HOH B 47 250 65 HOH HOH . G 5 HOH B 48 251 66 HOH HOH . G 5 HOH B 49 252 68 HOH HOH . G 5 HOH B 50 253 69 HOH HOH . G 5 HOH B 51 254 71 HOH HOH . G 5 HOH B 52 255 72 HOH HOH . G 5 HOH B 53 256 73 HOH HOH . G 5 HOH B 54 257 75 HOH HOH . G 5 HOH B 55 258 76 HOH HOH . G 5 HOH B 56 259 77 HOH HOH . G 5 HOH B 57 260 80 HOH HOH . G 5 HOH B 58 261 81 HOH HOH . G 5 HOH B 59 262 83 HOH HOH . G 5 HOH B 60 263 84 HOH HOH . G 5 HOH B 61 264 85 HOH HOH . G 5 HOH B 62 265 90 HOH HOH . G 5 HOH B 63 266 92 HOH HOH . G 5 HOH B 64 267 95 HOH HOH . G 5 HOH B 65 268 97 HOH HOH . G 5 HOH B 66 269 98 HOH HOH . G 5 HOH B 67 270 100 HOH HOH . G 5 HOH B 68 271 101 HOH HOH . G 5 HOH B 69 272 102 HOH HOH . G 5 HOH B 70 273 103 HOH HOH . G 5 HOH B 71 274 104 HOH HOH . G 5 HOH B 72 275 105 HOH HOH . G 5 HOH B 73 276 106 HOH HOH . G 5 HOH B 74 277 107 HOH HOH . G 5 HOH B 75 278 108 HOH HOH . G 5 HOH B 76 279 109 HOH HOH . G 5 HOH B 77 280 110 HOH HOH . G 5 HOH B 78 281 111 HOH HOH . G 5 HOH B 79 282 112 HOH HOH . G 5 HOH B 80 283 116 HOH HOH . G 5 HOH B 81 284 117 HOH HOH . G 5 HOH B 82 285 118 HOH HOH . G 5 HOH B 83 286 120 HOH HOH . G 5 HOH B 84 287 121 HOH HOH . G 5 HOH B 85 288 122 HOH HOH . G 5 HOH B 86 289 123 HOH HOH . G 5 HOH B 87 290 124 HOH HOH . G 5 HOH B 88 291 125 HOH HOH . G 5 HOH B 89 292 126 HOH HOH . G 5 HOH B 90 293 127 HOH HOH . G 5 HOH B 91 294 128 HOH HOH . G 5 HOH B 92 295 130 HOH HOH . G 5 HOH B 93 296 131 HOH HOH . G 5 HOH B 94 297 132 HOH HOH . G 5 HOH B 95 298 133 HOH HOH . G 5 HOH B 96 299 135 HOH HOH . G 5 HOH B 97 300 137 HOH HOH . G 5 HOH B 98 301 138 HOH HOH . G 5 HOH B 99 302 139 HOH HOH . G 5 HOH B 100 303 140 HOH HOH . G 5 HOH B 101 304 142 HOH HOH . G 5 HOH B 102 305 143 HOH HOH . G 5 HOH B 103 306 144 HOH HOH . G 5 HOH B 104 307 147 HOH HOH . G 5 HOH B 105 308 148 HOH HOH . G 5 HOH B 106 309 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -2.652 -9.068 2.603 1 28.63 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . D 4 -2.399 -8.206 1.523 1 32.05 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . D 4 -3.962 -9.759 2.301 1 30.61 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . D 4 -3.961 -10.129 0.937 1 31.15 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . D 4 -4.038 -11.019 3.127 1 31.37 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . D 4 -5.326 -11.548 2.948 1 34.77 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #