data_2FPC
#
_model_server_result.job_id            3taSr0_RUZsO6nn86mst7A 
_model_server_result.datetime_utc      '2024-11-18 06:55:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2fpc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2001}' 
#
_entry.id    2FPC 
#
_exptl.entry_id    2FPC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.366 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Secologanin 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2FPC 
_cell.length_a            148.607 
_cell.length_b            148.607 
_cell.length_c            121.069 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FPC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 67 A CYS 89 1_555 A SG CYS 79 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf2 B SG CYS 67 B CYS 89 1_555 B SG CYS 79 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C17 H24 O10' 
_chem_comp.formula_weight    388.366 
_chem_comp.id                SCG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Secologanin 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'METHYL (2S,3R,4S)-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-(2-OXOETHYL)-3-VINYL-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O16 C10 SCG doub 277 n n 
C10 C9 SCG sing 278 n n 
C10 H10 SCG sing 279 n n 
C9 C3 SCG sing 280 n n 
C9 H91 SCG sing 281 n n 
C9 H92 SCG sing 282 n n 
C3 C2 SCG sing 283 n n 
C3 C4 SCG sing 284 n n 
C3 H3 SCG sing 285 n n 
C2 C7 SCG sing 286 n n 
C2 C1 SCG sing 287 n n 
C2 H2 SCG sing 288 n n 
C7 C8 SCG doub 289 n n 
C7 H7 SCG sing 290 n n 
C8 H81 SCG sing 291 n n 
C8 H82 SCG sing 292 n n 
C1 O5 SCG sing 293 n n 
C1 O1 SCG sing 294 n n 
C1 H1 SCG sing 295 n n 
O5 C5 SCG sing 296 n n 
C5 C4 SCG doub 297 n n 
C5 H5 SCG sing 298 n n 
C4 C12 SCG sing 299 n n 
C12 O14 SCG sing 300 n n 
C12 O13 SCG doub 301 n n 
O14 C15 SCG sing 302 n n 
C15 H151 SCG sing 303 n n 
C15 H152 SCG sing 304 n n 
C15 H153 SCG sing 305 n n 
O1 C17 SCG sing 306 n n 
C17 O22 SCG sing 307 n n 
C17 C18 SCG sing 308 n n 
C17 H17 SCG sing 309 n n 
O22 C21 SCG sing 310 n n 
C21 C23 SCG sing 311 n n 
C21 C20 SCG sing 312 n n 
C21 H21 SCG sing 313 n n 
C23 O24 SCG sing 314 n n 
C23 H231 SCG sing 315 n n 
C23 H232 SCG sing 316 n n 
O24 H24 SCG sing 317 n n 
C20 O25 SCG sing 318 n n 
C20 C19 SCG sing 319 n n 
C20 H20 SCG sing 320 n n 
O25 H25 SCG sing 321 n n 
C19 O26 SCG sing 322 n n 
C19 C18 SCG sing 323 n n 
C19 H19 SCG sing 324 n n 
O26 H26 SCG sing 325 n n 
C18 O27 SCG sing 326 n n 
C18 H18 SCG sing 327 n n 
O27 H27 SCG sing 328 n n 
#
_atom_sites.entry_id                     2FPC 
_atom_sites.fract_transf_matrix[1][1]    0.006729 
_atom_sites.fract_transf_matrix[1][2]    0.003885 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00777 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00826 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SCG A 1 1001 1001 SCG SCG . 
D 2 SCG B 1 2001 2001 SCG SCG . 
E 3 HOH A 1 1002 1 HOH HOH . 
E 3 HOH A 2 1003 2 HOH HOH . 
E 3 HOH A 3 1004 4 HOH HOH . 
E 3 HOH A 4 1005 5 HOH HOH . 
E 3 HOH A 5 1006 7 HOH HOH . 
E 3 HOH A 6 1007 9 HOH HOH . 
E 3 HOH A 7 1008 11 HOH HOH . 
E 3 HOH A 8 1009 17 HOH HOH . 
E 3 HOH A 9 1010 18 HOH HOH . 
E 3 HOH A 10 1011 20 HOH HOH . 
E 3 HOH A 11 1012 21 HOH HOH . 
E 3 HOH A 12 1013 22 HOH HOH . 
E 3 HOH A 13 1014 24 HOH HOH . 
E 3 HOH A 14 1015 27 HOH HOH . 
E 3 HOH A 15 1016 30 HOH HOH . 
E 3 HOH A 16 1017 31 HOH HOH . 
E 3 HOH A 17 1018 32 HOH HOH . 
E 3 HOH A 18 1019 34 HOH HOH . 
E 3 HOH A 19 1020 38 HOH HOH . 
E 3 HOH A 20 1021 39 HOH HOH . 
E 3 HOH A 21 1022 40 HOH HOH . 
E 3 HOH A 22 1023 42 HOH HOH . 
E 3 HOH A 23 1024 43 HOH HOH . 
E 3 HOH A 24 1025 48 HOH HOH . 
E 3 HOH A 25 1026 49 HOH HOH . 
E 3 HOH A 26 1027 54 HOH HOH . 
E 3 HOH A 27 1028 55 HOH HOH . 
E 3 HOH A 28 1029 56 HOH HOH . 
E 3 HOH A 29 1030 57 HOH HOH . 
E 3 HOH A 30 1031 58 HOH HOH . 
E 3 HOH A 31 1032 62 HOH HOH . 
E 3 HOH A 32 1033 66 HOH HOH . 
E 3 HOH A 33 1034 67 HOH HOH . 
E 3 HOH A 34 1035 68 HOH HOH . 
E 3 HOH A 35 1036 69 HOH HOH . 
E 3 HOH A 36 1037 70 HOH HOH . 
E 3 HOH A 37 1038 71 HOH HOH . 
E 3 HOH A 38 1039 72 HOH HOH . 
E 3 HOH A 39 1040 75 HOH HOH . 
E 3 HOH A 40 1041 77 HOH HOH . 
E 3 HOH A 41 1042 82 HOH HOH . 
E 3 HOH A 42 1043 83 HOH HOH . 
E 3 HOH A 43 1044 84 HOH HOH . 
E 3 HOH A 44 1045 86 HOH HOH . 
E 3 HOH A 45 1046 95 HOH HOH . 
E 3 HOH A 46 1047 98 HOH HOH . 
E 3 HOH A 47 1048 99 HOH HOH . 
E 3 HOH A 48 1049 100 HOH HOH . 
E 3 HOH A 49 1050 102 HOH HOH . 
E 3 HOH A 50 1051 104 HOH HOH . 
E 3 HOH A 51 1052 106 HOH HOH . 
E 3 HOH A 52 1053 107 HOH HOH . 
E 3 HOH A 53 1054 110 HOH HOH . 
E 3 HOH A 54 1055 113 HOH HOH . 
E 3 HOH A 55 1056 114 HOH HOH . 
F 3 HOH B 1 2002 3 HOH HOH . 
F 3 HOH B 2 2003 12 HOH HOH . 
F 3 HOH B 3 2004 14 HOH HOH . 
F 3 HOH B 4 2005 15 HOH HOH . 
F 3 HOH B 5 2006 25 HOH HOH . 
F 3 HOH B 6 2007 26 HOH HOH . 
F 3 HOH B 7 2008 28 HOH HOH . 
F 3 HOH B 8 2009 29 HOH HOH . 
F 3 HOH B 9 2010 33 HOH HOH . 
F 3 HOH B 10 2011 36 HOH HOH . 
F 3 HOH B 11 2012 37 HOH HOH . 
F 3 HOH B 12 2013 41 HOH HOH . 
F 3 HOH B 13 2014 44 HOH HOH . 
F 3 HOH B 14 2015 45 HOH HOH . 
F 3 HOH B 15 2016 46 HOH HOH . 
F 3 HOH B 16 2017 47 HOH HOH . 
F 3 HOH B 17 2018 50 HOH HOH . 
F 3 HOH B 18 2019 51 HOH HOH . 
F 3 HOH B 19 2020 52 HOH HOH . 
F 3 HOH B 20 2021 53 HOH HOH . 
F 3 HOH B 21 2022 59 HOH HOH . 
F 3 HOH B 22 2023 60 HOH HOH . 
F 3 HOH B 23 2024 61 HOH HOH . 
F 3 HOH B 24 2025 63 HOH HOH . 
F 3 HOH B 25 2026 64 HOH HOH . 
F 3 HOH B 26 2027 65 HOH HOH . 
F 3 HOH B 27 2028 73 HOH HOH . 
F 3 HOH B 28 2029 74 HOH HOH . 
F 3 HOH B 29 2030 76 HOH HOH . 
F 3 HOH B 30 2031 79 HOH HOH . 
F 3 HOH B 31 2032 80 HOH HOH . 
F 3 HOH B 32 2033 81 HOH HOH . 
F 3 HOH B 33 2034 85 HOH HOH . 
F 3 HOH B 34 2035 87 HOH HOH . 
F 3 HOH B 35 2036 89 HOH HOH . 
F 3 HOH B 36 2037 90 HOH HOH . 
F 3 HOH B 37 2038 91 HOH HOH . 
F 3 HOH B 38 2039 92 HOH HOH . 
F 3 HOH B 39 2040 93 HOH HOH . 
F 3 HOH B 40 2041 94 HOH HOH . 
F 3 HOH B 41 2042 96 HOH HOH . 
F 3 HOH B 42 2043 97 HOH HOH . 
F 3 HOH B 43 2044 101 HOH HOH . 
F 3 HOH B 44 2045 103 HOH HOH . 
F 3 HOH B 45 2046 105 HOH HOH . 
F 3 HOH B 46 2047 108 HOH HOH . 
F 3 HOH B 47 2048 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O16 SCG . . . D 2 124.151 41.778 5.349 1 61.42 ? O16 SCG 2001 B 1 
HETATM 2 C C10 SCG . . . D 2 123.875 42.605 6.22 1 57.81 ? C10 SCG 2001 B 1 
HETATM 3 C C9 SCG . . . D 2 122.456 42.608 6.714 1 59.87 ? C9 SCG 2001 B 1 
HETATM 4 C C3 SCG . . . D 2 122.126 43.866 7.508 1 63.14 ? C3 SCG 2001 B 1 
HETATM 5 C C2 SCG . . . D 2 121.389 44.932 6.683 1 65.88 ? C2 SCG 2001 B 1 
HETATM 6 C C7 SCG . . . D 2 122.285 45.546 5.597 1 71.03 ? C7 SCG 2001 B 1 
HETATM 7 C C8 SCG . . . D 2 122.04 45.374 4.311 1 70.67 ? C8 SCG 2001 B 1 
HETATM 8 C C1 SCG . . . D 2 120.031 44.427 6.195 1 61.57 ? C1 SCG 2001 B 1 
HETATM 9 O O5 SCG . . . D 2 119.303 44.212 7.392 1 62.63 ? O5 SCG 2001 B 1 
HETATM 10 C C5 SCG . . . D 2 119.924 43.752 8.636 1 60.46 ? C5 SCG 2001 B 1 
HETATM 11 C C4 SCG . . . D 2 121.241 43.484 8.669 1 63.2 ? C4 SCG 2001 B 1 
HETATM 12 C C12 SCG . . . D 2 121.836 42.802 9.828 1 66.81 ? C12 SCG 2001 B 1 
HETATM 13 O O14 SCG . . . D 2 121.081 42.781 11.109 1 64.51 ? O14 SCG 2001 B 1 
HETATM 14 C C15 SCG . . . D 2 121.65 42.816 12.43 1 56.76 ? C15 SCG 2001 B 1 
HETATM 15 O O13 SCG . . . D 2 122.943 42.241 9.675 1 71.57 ? O13 SCG 2001 B 1 
HETATM 16 O O1 SCG . . . D 2 119.386 45.451 5.422 1 66.97 ? O1 SCG 2001 B 1 
HETATM 17 C C17 SCG . . . D 2 118.02 45.198 5.034 1 66.74 ? C17 SCG 2001 B 1 
HETATM 18 O O22 SCG . . . D 2 118.073 44.239 3.984 1 63.22 ? O22 SCG 2001 B 1 
HETATM 19 C C21 SCG . . . D 2 116.835 43.873 3.351 1 63.42 ? C21 SCG 2001 B 1 
HETATM 20 C C23 SCG . . . D 2 117.069 42.705 2.347 1 64.29 ? C23 SCG 2001 B 1 
HETATM 21 O O24 SCG . . . D 2 117.684 43.068 1.079 1 62.84 ? O24 SCG 2001 B 1 
HETATM 22 C C20 SCG . . . D 2 116.161 45.113 2.745 1 62.96 ? C20 SCG 2001 B 1 
HETATM 23 O O25 SCG . . . D 2 114.858 44.768 2.232 1 65.84 ? O25 SCG 2001 B 1 
HETATM 24 C C19 SCG . . . D 2 115.992 46.203 3.803 1 68.48 ? C19 SCG 2001 B 1 
HETATM 25 O O26 SCG . . . D 2 115.311 47.333 3.193 1 66.85 ? O26 SCG 2001 B 1 
HETATM 26 C C18 SCG . . . D 2 117.342 46.506 4.538 1 72.12 ? C18 SCG 2001 B 1 
HETATM 27 O O27 SCG . . . D 2 117.2 47.442 5.655 1 71.89 ? O27 SCG 2001 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#