data_2FPK
#
_model_server_result.job_id            baO_rOmbWOJj87_gg1XjUA 
_model_server_result.datetime_utc      '2025-02-18 09:31:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2fpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    2FPK 
#
_exptl.entry_id    2FPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2FPK 
_cell.length_a            83.986 
_cell.length_b            83.986 
_cell.length_c            106.367 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 6 A THR 6 1_555 D K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc2 A O LEU 8 A LEU 8 1_555 D K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc3 A N VAL 11 A VAL 11 1_555 D K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.631 ? 
metalc ? metalc4 A O VAL 11 A VAL 11 1_555 D K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc5 A O GLN 98 A GLN 98 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc6 A OG1 THR 112 A THR 112 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc7 A O GLU 164 A GLU 164 4_665 D K K . A K 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc8 A OD1 ASP 246 A ASP 246 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc9 E O1B ADP . A ADP 401 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc10 B MG MG . A MG 501 1_555 F O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc11 B MG MG . A MG 501 1_555 F O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc12 B MG MG . A MG 501 1_555 F O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc13 B MG MG . A MG 501 1_555 F O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc14 C MG MG . A MG 502 1_555 F O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc15 C MG MG . A MG 502 1_555 F O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc16 C MG MG . A MG 502 1_555 F O HOH . A HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc17 C MG MG . A MG 502 1_555 F O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc18 D K K . A K 506 1_555 F O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc19 D K K . A K 506 1_555 F O HOH . A HOH 637 4_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2FPK 
_atom_sites.fract_transf_matrix[1][1]    0.011907 
_atom_sites.fract_transf_matrix[1][2]    0.006874 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013749 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 2 MG A 1 502 502 MG MG . 
D 3 K A 1 506 506 K K . 
E 4 ADP A 1 401 401 ADP ADP . 
F 5 HOH A 1 601 601 HOH TIP . 
F 5 HOH A 2 602 602 HOH TIP . 
F 5 HOH A 3 603 603 HOH TIP . 
F 5 HOH A 4 604 604 HOH TIP . 
F 5 HOH A 5 605 605 HOH TIP . 
F 5 HOH A 6 606 606 HOH TIP . 
F 5 HOH A 7 607 607 HOH TIP . 
F 5 HOH A 8 608 608 HOH TIP . 
F 5 HOH A 9 611 611 HOH TIP . 
F 5 HOH A 10 612 612 HOH TIP . 
F 5 HOH A 11 613 613 HOH TIP . 
F 5 HOH A 12 614 614 HOH TIP . 
F 5 HOH A 13 615 615 HOH TIP . 
F 5 HOH A 14 616 616 HOH TIP . 
F 5 HOH A 15 617 617 HOH TIP . 
F 5 HOH A 16 618 618 HOH TIP . 
F 5 HOH A 17 619 619 HOH TIP . 
F 5 HOH A 18 620 620 HOH TIP . 
F 5 HOH A 19 621 621 HOH TIP . 
F 5 HOH A 20 622 622 HOH TIP . 
F 5 HOH A 21 623 623 HOH TIP . 
F 5 HOH A 22 624 624 HOH TIP . 
F 5 HOH A 23 625 625 HOH TIP . 
F 5 HOH A 24 626 626 HOH TIP . 
F 5 HOH A 25 627 627 HOH TIP . 
F 5 HOH A 26 628 628 HOH TIP . 
F 5 HOH A 27 629 629 HOH TIP . 
F 5 HOH A 28 630 630 HOH TIP . 
F 5 HOH A 29 631 631 HOH TIP . 
F 5 HOH A 30 632 632 HOH TIP . 
F 5 HOH A 31 633 633 HOH TIP . 
F 5 HOH A 32 634 634 HOH TIP . 
F 5 HOH A 33 635 635 HOH TIP . 
F 5 HOH A 34 636 636 HOH TIP . 
F 5 HOH A 35 637 637 HOH TIP . 
F 5 HOH A 36 638 638 HOH TIP . 
F 5 HOH A 37 639 639 HOH TIP . 
F 5 HOH A 38 640 640 HOH TIP . 
F 5 HOH A 39 641 641 HOH TIP . 
F 5 HOH A 40 642 642 HOH TIP . 
F 5 HOH A 41 643 643 HOH TIP . 
F 5 HOH A 42 644 644 HOH TIP . 
F 5 HOH A 43 645 645 HOH TIP . 
F 5 HOH A 44 646 646 HOH TIP . 
F 5 HOH A 45 647 647 HOH TIP . 
F 5 HOH A 46 648 648 HOH TIP . 
F 5 HOH A 47 649 649 HOH TIP . 
F 5 HOH A 48 650 650 HOH TIP . 
F 5 HOH A 49 651 651 HOH TIP . 
F 5 HOH A 50 652 652 HOH TIP . 
F 5 HOH A 51 653 653 HOH TIP . 
F 5 HOH A 52 654 654 HOH TIP . 
F 5 HOH A 53 655 655 HOH TIP . 
F 5 HOH A 54 656 656 HOH TIP . 
F 5 HOH A 55 657 657 HOH TIP . 
F 5 HOH A 56 658 658 HOH TIP . 
F 5 HOH A 57 659 659 HOH TIP . 
F 5 HOH A 58 660 660 HOH TIP . 
F 5 HOH A 59 661 661 HOH TIP . 
F 5 HOH A 60 662 662 HOH TIP . 
F 5 HOH A 61 663 663 HOH TIP . 
F 5 HOH A 62 664 664 HOH TIP . 
F 5 HOH A 63 665 665 HOH TIP . 
F 5 HOH A 64 666 666 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 4 28.524 57.466 -10.528 1 20.31 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . E 4 27.581 57.06 -9.451 1 15.36 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . E 4 29.896 57.107 -10.149 1 21.18 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . E 4 28.413 59.044 -10.772 1 21.15 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . E 4 27.035 55.561 -11.964 1 21.05 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . E 4 27.348 54.472 -10.935 1 24.65 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . E 4 25.708 56.139 -11.672 1 18.1 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . E 4 28.174 56.713 -11.9 1 23.14 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . E 4 27.093 54.895 -13.476 1 22.68 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . E 4 26.492 55.566 -14.698 1 25.45 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . E 4 26.803 54.835 -15.774 1 28.54 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . E 4 26.234 53.492 -15.621 1 27.36 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . E 4 26.055 55.367 -17.036 1 30.35 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . E 4 26.425 56.613 -17.482 1 37.17 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . E 4 25.838 54.113 -17.933 1 29.07 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . E 4 27.028 54.007 -18.892 1 35.63 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . E 4 25.923 52.954 -16.944 1 26.05 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . E 4 24.699 52.376 -16.92 1 24.53 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . E 4 23.659 52.64 -16.006 1 22.04 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . E 4 22.636 51.909 -16.295 1 23.64 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . E 4 22.925 51.15 -17.369 1 23.75 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . E 4 22.209 50.211 -18.087 1 26.04 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . E 4 20.931 49.907 -17.729 1 26.79 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . E 4 22.821 49.579 -19.191 1 25.88 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . E 4 24.164 49.899 -19.576 1 25.96 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . E 4 24.893 50.827 -18.886 1 25.35 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . E 4 24.221 51.43 -17.776 1 23.6 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#