data_2FR8 # _model_server_result.job_id TSoMF_b1e68v_DfzD0Rlvg _model_server_result.datetime_utc '2024-11-24 15:28:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2fr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 2FR8 # _exptl.entry_id 2FR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2FR8 _cell.length_a 63.13 _cell.length_b 70.33 _cell.length_c 195.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2FR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 2FR8 _atom_sites.fract_transf_matrix[1][1] 0.01584 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAD A 1 500 500 NAD NAD . E 4 NAP C 1 400 400 NAP NAP . F 5 HOH A 1 501 1 HOH HOH . F 5 HOH A 2 502 2 HOH HOH . F 5 HOH A 3 503 5 HOH HOH . F 5 HOH A 4 504 6 HOH HOH . F 5 HOH A 5 505 7 HOH HOH . F 5 HOH A 6 506 8 HOH HOH . F 5 HOH A 7 507 9 HOH HOH . F 5 HOH A 8 508 10 HOH HOH . F 5 HOH A 9 509 14 HOH HOH . F 5 HOH A 10 510 15 HOH HOH . F 5 HOH A 11 511 18 HOH HOH . F 5 HOH A 12 512 19 HOH HOH . F 5 HOH A 13 513 21 HOH HOH . F 5 HOH A 14 514 23 HOH HOH . F 5 HOH A 15 515 27 HOH HOH . F 5 HOH A 16 516 28 HOH HOH . F 5 HOH A 17 517 30 HOH HOH . F 5 HOH A 18 518 31 HOH HOH . F 5 HOH A 19 519 33 HOH HOH . F 5 HOH A 20 520 34 HOH HOH . F 5 HOH A 21 521 35 HOH HOH . F 5 HOH A 22 522 37 HOH HOH . F 5 HOH A 23 523 38 HOH HOH . F 5 HOH A 24 524 39 HOH HOH . F 5 HOH A 25 525 43 HOH HOH . F 5 HOH A 26 526 54 HOH HOH . G 5 HOH B 1 385 3 HOH HOH . G 5 HOH B 2 386 4 HOH HOH . G 5 HOH B 3 387 11 HOH HOH . G 5 HOH B 4 388 12 HOH HOH . G 5 HOH B 5 389 13 HOH HOH . G 5 HOH B 6 390 16 HOH HOH . G 5 HOH B 7 391 17 HOH HOH . G 5 HOH B 8 392 20 HOH HOH . G 5 HOH B 9 393 22 HOH HOH . G 5 HOH B 10 394 24 HOH HOH . G 5 HOH B 11 395 25 HOH HOH . G 5 HOH B 12 396 26 HOH HOH . G 5 HOH B 13 397 32 HOH HOH . G 5 HOH B 14 398 36 HOH HOH . G 5 HOH B 15 399 40 HOH HOH . G 5 HOH B 16 400 41 HOH HOH . G 5 HOH B 17 401 42 HOH HOH . G 5 HOH B 18 402 44 HOH HOH . G 5 HOH B 19 403 45 HOH HOH . G 5 HOH B 20 404 47 HOH HOH . G 5 HOH B 21 405 49 HOH HOH . G 5 HOH B 22 406 50 HOH HOH . G 5 HOH B 23 407 51 HOH HOH . G 5 HOH B 24 408 52 HOH HOH . G 5 HOH B 25 409 53 HOH HOH . G 5 HOH B 26 410 56 HOH HOH . H 5 HOH C 1 401 29 HOH HOH . H 5 HOH C 2 402 46 HOH HOH . H 5 HOH C 3 403 48 HOH HOH . H 5 HOH C 4 404 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 3 -21.802 59.731 21.726 1 77.28 ? PA NAD 500 A 1 HETATM 2 O O1A NAD . . . D 3 -20.425 59.324 21.35 1 77.1 ? O1A NAD 500 A 1 HETATM 3 O O2A NAD . . . D 3 -22.817 59.08 20.856 1 77.32 ? O2A NAD 500 A 1 HETATM 4 O O5B NAD . . . D 3 -21.952 61.334 21.629 1 76.74 ? O5B NAD 500 A 1 HETATM 5 C C5B NAD . . . D 3 -20.854 62.19 21.841 1 76.11 ? C5B NAD 500 A 1 HETATM 6 C C4B NAD . . . D 3 -21.28 63.507 22.486 1 75.77 ? C4B NAD 500 A 1 HETATM 7 O O4B NAD . . . D 3 -21.723 64.463 21.535 1 75.65 ? O4B NAD 500 A 1 HETATM 8 C C3B NAD . . . D 3 -22.385 63.412 23.544 1 75.55 ? C3B NAD 500 A 1 HETATM 9 O O3B NAD . . . D 3 -21.902 63.831 24.808 1 75.39 ? O3B NAD 500 A 1 HETATM 10 C C2B NAD . . . D 3 -23.456 64.365 23.053 1 75.52 ? C2B NAD 500 A 1 HETATM 11 O O2B NAD . . . D 3 -24.107 65.032 24.111 1 75.56 ? O2B NAD 500 A 1 HETATM 12 C C1B NAD . . . D 3 -22.648 65.318 22.185 1 75.46 ? C1B NAD 500 A 1 HETATM 13 N N9A NAD . . . D 3 -23.45 66.133 21.239 1 75.32 ? N9A NAD 500 A 1 HETATM 14 C C8A NAD . . . D 3 -24.388 65.707 20.334 1 75.22 ? C8A NAD 500 A 1 HETATM 15 N N7A NAD . . . D 3 -24.869 66.794 19.671 1 75.14 ? N7A NAD 500 A 1 HETATM 16 C C5A NAD . . . D 3 -24.256 67.914 20.129 1 75.06 ? C5A NAD 500 A 1 HETATM 17 C C6A NAD . . . D 3 -24.349 69.284 19.817 1 75.06 ? C6A NAD 500 A 1 HETATM 18 N N6A NAD . . . D 3 -25.169 69.756 18.882 1 75.08 ? N6A NAD 500 A 1 HETATM 19 N N1A NAD . . . D 3 -23.557 70.195 20.492 1 75.06 ? N1A NAD 500 A 1 HETATM 20 C C2A NAD . . . D 3 -22.682 69.76 21.458 1 75.02 ? C2A NAD 500 A 1 HETATM 21 N N3A NAD . . . D 3 -22.599 68.415 21.759 1 75.16 ? N3A NAD 500 A 1 HETATM 22 C C4A NAD . . . D 3 -23.364 67.502 21.113 1 75.2 ? C4A NAD 500 A 1 HETATM 23 O O3 NAD . . . D 3 -22.099 59.397 23.275 1 77.51 ? O3 NAD 500 A 1 HETATM 24 P PN NAD . . . D 3 -21.058 58.572 24.185 1 77.71 ? PN NAD 500 A 1 HETATM 25 O O1N NAD . . . D 3 -19.828 59.388 24.285 1 77.72 ? O1N NAD 500 A 1 HETATM 26 O O2N NAD . . . D 3 -20.997 57.171 23.702 1 77.75 ? O2N NAD 500 A 1 HETATM 27 O O5D NAD . . . D 3 -21.78 58.576 25.626 1 77.78 ? O5D NAD 500 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #