data_2FR8
#
_model_server_result.job_id            q8aO9ybdY0fvS3Uv6pPWeQ 
_model_server_result.datetime_utc      '2024-11-08 18:43:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2fr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    2FR8 
#
_exptl.entry_id    2FR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2FR8 
_cell.length_a            63.13 
_cell.length_b            70.33 
_cell.length_c            195.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     2FR8 
_atom_sites.fract_transf_matrix[1][1]    0.01584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005125 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAD A 1 500 500 NAD NAD . 
E 4 NAP C 1 400 400 NAP NAP . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 2 HOH HOH . 
F 5 HOH A 3 503 5 HOH HOH . 
F 5 HOH A 4 504 6 HOH HOH . 
F 5 HOH A 5 505 7 HOH HOH . 
F 5 HOH A 6 506 8 HOH HOH . 
F 5 HOH A 7 507 9 HOH HOH . 
F 5 HOH A 8 508 10 HOH HOH . 
F 5 HOH A 9 509 14 HOH HOH . 
F 5 HOH A 10 510 15 HOH HOH . 
F 5 HOH A 11 511 18 HOH HOH . 
F 5 HOH A 12 512 19 HOH HOH . 
F 5 HOH A 13 513 21 HOH HOH . 
F 5 HOH A 14 514 23 HOH HOH . 
F 5 HOH A 15 515 27 HOH HOH . 
F 5 HOH A 16 516 28 HOH HOH . 
F 5 HOH A 17 517 30 HOH HOH . 
F 5 HOH A 18 518 31 HOH HOH . 
F 5 HOH A 19 519 33 HOH HOH . 
F 5 HOH A 20 520 34 HOH HOH . 
F 5 HOH A 21 521 35 HOH HOH . 
F 5 HOH A 22 522 37 HOH HOH . 
F 5 HOH A 23 523 38 HOH HOH . 
F 5 HOH A 24 524 39 HOH HOH . 
F 5 HOH A 25 525 43 HOH HOH . 
F 5 HOH A 26 526 54 HOH HOH . 
G 5 HOH B 1 385 3 HOH HOH . 
G 5 HOH B 2 386 4 HOH HOH . 
G 5 HOH B 3 387 11 HOH HOH . 
G 5 HOH B 4 388 12 HOH HOH . 
G 5 HOH B 5 389 13 HOH HOH . 
G 5 HOH B 6 390 16 HOH HOH . 
G 5 HOH B 7 391 17 HOH HOH . 
G 5 HOH B 8 392 20 HOH HOH . 
G 5 HOH B 9 393 22 HOH HOH . 
G 5 HOH B 10 394 24 HOH HOH . 
G 5 HOH B 11 395 25 HOH HOH . 
G 5 HOH B 12 396 26 HOH HOH . 
G 5 HOH B 13 397 32 HOH HOH . 
G 5 HOH B 14 398 36 HOH HOH . 
G 5 HOH B 15 399 40 HOH HOH . 
G 5 HOH B 16 400 41 HOH HOH . 
G 5 HOH B 17 401 42 HOH HOH . 
G 5 HOH B 18 402 44 HOH HOH . 
G 5 HOH B 19 403 45 HOH HOH . 
G 5 HOH B 20 404 47 HOH HOH . 
G 5 HOH B 21 405 49 HOH HOH . 
G 5 HOH B 22 406 50 HOH HOH . 
G 5 HOH B 23 407 51 HOH HOH . 
G 5 HOH B 24 408 52 HOH HOH . 
G 5 HOH B 25 409 53 HOH HOH . 
G 5 HOH B 26 410 56 HOH HOH . 
H 5 HOH C 1 401 29 HOH HOH . 
H 5 HOH C 2 402 46 HOH HOH . 
H 5 HOH C 3 403 48 HOH HOH . 
H 5 HOH C 4 404 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 3 -21.802 59.731 21.726 1 77.28 ? PA NAD 500 A 1 
HETATM 2 O O1A NAD . . . D 3 -20.425 59.324 21.35 1 77.1 ? O1A NAD 500 A 1 
HETATM 3 O O2A NAD . . . D 3 -22.817 59.08 20.856 1 77.32 ? O2A NAD 500 A 1 
HETATM 4 O O5B NAD . . . D 3 -21.952 61.334 21.629 1 76.74 ? O5B NAD 500 A 1 
HETATM 5 C C5B NAD . . . D 3 -20.854 62.19 21.841 1 76.11 ? C5B NAD 500 A 1 
HETATM 6 C C4B NAD . . . D 3 -21.28 63.507 22.486 1 75.77 ? C4B NAD 500 A 1 
HETATM 7 O O4B NAD . . . D 3 -21.723 64.463 21.535 1 75.65 ? O4B NAD 500 A 1 
HETATM 8 C C3B NAD . . . D 3 -22.385 63.412 23.544 1 75.55 ? C3B NAD 500 A 1 
HETATM 9 O O3B NAD . . . D 3 -21.902 63.831 24.808 1 75.39 ? O3B NAD 500 A 1 
HETATM 10 C C2B NAD . . . D 3 -23.456 64.365 23.053 1 75.52 ? C2B NAD 500 A 1 
HETATM 11 O O2B NAD . . . D 3 -24.107 65.032 24.111 1 75.56 ? O2B NAD 500 A 1 
HETATM 12 C C1B NAD . . . D 3 -22.648 65.318 22.185 1 75.46 ? C1B NAD 500 A 1 
HETATM 13 N N9A NAD . . . D 3 -23.45 66.133 21.239 1 75.32 ? N9A NAD 500 A 1 
HETATM 14 C C8A NAD . . . D 3 -24.388 65.707 20.334 1 75.22 ? C8A NAD 500 A 1 
HETATM 15 N N7A NAD . . . D 3 -24.869 66.794 19.671 1 75.14 ? N7A NAD 500 A 1 
HETATM 16 C C5A NAD . . . D 3 -24.256 67.914 20.129 1 75.06 ? C5A NAD 500 A 1 
HETATM 17 C C6A NAD . . . D 3 -24.349 69.284 19.817 1 75.06 ? C6A NAD 500 A 1 
HETATM 18 N N6A NAD . . . D 3 -25.169 69.756 18.882 1 75.08 ? N6A NAD 500 A 1 
HETATM 19 N N1A NAD . . . D 3 -23.557 70.195 20.492 1 75.06 ? N1A NAD 500 A 1 
HETATM 20 C C2A NAD . . . D 3 -22.682 69.76 21.458 1 75.02 ? C2A NAD 500 A 1 
HETATM 21 N N3A NAD . . . D 3 -22.599 68.415 21.759 1 75.16 ? N3A NAD 500 A 1 
HETATM 22 C C4A NAD . . . D 3 -23.364 67.502 21.113 1 75.2 ? C4A NAD 500 A 1 
HETATM 23 O O3 NAD . . . D 3 -22.099 59.397 23.275 1 77.51 ? O3 NAD 500 A 1 
HETATM 24 P PN NAD . . . D 3 -21.058 58.572 24.185 1 77.71 ? PN NAD 500 A 1 
HETATM 25 O O1N NAD . . . D 3 -19.828 59.388 24.285 1 77.72 ? O1N NAD 500 A 1 
HETATM 26 O O2N NAD . . . D 3 -20.997 57.171 23.702 1 77.75 ? O2N NAD 500 A 1 
HETATM 27 O O5D NAD . . . D 3 -21.78 58.576 25.626 1 77.78 ? O5D NAD 500 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#