data_2FRD
#
_model_server_result.job_id            ORV-TtW2UbqIiJViSHH6AA 
_model_server_result.datetime_utc      '2024-11-24 08:35:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2frd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":300}' 
#
_entry.id    2FRD 
#
_exptl.entry_id    2FRD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2FRD 
_cell.length_a            71.3 
_cell.length_b            74.11 
_cell.length_c            205.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2FRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 314 n n 
PA O2A NDP sing 315 n n 
PA O5B NDP sing 316 n n 
PA O3 NDP sing 317 n n 
O2A HOA2 NDP sing 318 n n 
O5B C5B NDP sing 319 n n 
C5B C4B NDP sing 320 n n 
C5B H51A NDP sing 321 n n 
C5B H52A NDP sing 322 n n 
C4B O4B NDP sing 323 n n 
C4B C3B NDP sing 324 n n 
C4B H4B NDP sing 325 n n 
O4B C1B NDP sing 326 n n 
C3B O3B NDP sing 327 n n 
C3B C2B NDP sing 328 n n 
C3B H3B NDP sing 329 n n 
O3B HO3A NDP sing 330 n n 
C2B O2B NDP sing 331 n n 
C2B C1B NDP sing 332 n n 
C2B H2B NDP sing 333 n n 
O2B P2B NDP sing 334 n n 
C1B N9A NDP sing 335 n n 
C1B H1B NDP sing 336 n n 
N9A C8A NDP sing 337 n y 
N9A C4A NDP sing 338 n y 
C8A N7A NDP doub 339 n y 
C8A H8A NDP sing 340 n n 
N7A C5A NDP sing 341 n y 
C5A C6A NDP sing 342 n y 
C5A C4A NDP doub 343 n y 
C6A N6A NDP sing 344 n n 
C6A N1A NDP doub 345 n y 
N6A H61A NDP sing 346 n n 
N6A H62A NDP sing 347 n n 
N1A C2A NDP sing 348 n y 
C2A N3A NDP doub 349 n y 
C2A H2A NDP sing 350 n n 
N3A C4A NDP sing 351 n y 
O3 PN NDP sing 352 n n 
PN O1N NDP doub 353 n n 
PN O2N NDP sing 354 n n 
PN O5D NDP sing 355 n n 
O2N H21N NDP sing 356 n n 
O5D C5D NDP sing 357 n n 
C5D C4D NDP sing 358 n n 
C5D H51N NDP sing 359 n n 
C5D H52N NDP sing 360 n n 
C4D O4D NDP sing 361 n n 
C4D C3D NDP sing 362 n n 
C4D H4D NDP sing 363 n n 
O4D C1D NDP sing 364 n n 
C3D O3D NDP sing 365 n n 
C3D C2D NDP sing 366 n n 
C3D H3D NDP sing 367 n n 
O3D HO3N NDP sing 368 n n 
C2D O2D NDP sing 369 n n 
C2D C1D NDP sing 370 n n 
C2D H2D NDP sing 371 n n 
O2D HO2N NDP sing 372 n n 
C1D N1N NDP sing 373 n n 
C1D H1D NDP sing 374 n n 
N1N C2N NDP sing 375 n n 
N1N C6N NDP sing 376 n n 
C2N C3N NDP doub 377 n n 
C2N H2N NDP sing 378 n n 
C3N C7N NDP sing 379 n n 
C3N C4N NDP sing 380 n n 
C7N O7N NDP doub 381 n n 
C7N N7N NDP sing 382 n n 
N7N H71N NDP sing 383 n n 
N7N H72N NDP sing 384 n n 
C4N C5N NDP sing 385 n n 
C4N H41N NDP sing 386 n n 
C4N H42N NDP sing 387 n n 
C5N C6N NDP doub 388 n n 
C5N H5N NDP sing 389 n n 
C6N H6N NDP sing 390 n n 
P2B O1X NDP doub 391 n n 
P2B O2X NDP sing 392 n n 
P2B O3X NDP sing 393 n n 
O2X HOP2 NDP sing 394 n n 
O3X HOP3 NDP sing 395 n n 
#
_atom_sites.entry_id                     2FRD 
_atom_sites.fract_transf_matrix[1][1]    0.014025 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAI A 1 500 500 NAI NAD . 
E 3 NAI B 1 600 600 NAI NAD . 
F 4 NDP C 1 300 300 NDP NAP . 
G 5 HOH B 1 601 1 HOH HOH . 
G 5 HOH B 2 602 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . F 4 -24.709 -36.639 7.866 1 37.16 ? PA NDP 300 C 1 
HETATM 2 O O1A NDP . . . F 4 -25.34 -37.667 7.025 1 38.16 ? O1A NDP 300 C 1 
HETATM 3 O O2A NDP . . . F 4 -24.546 -37.174 9.229 1 37.44 ? O2A NDP 300 C 1 
HETATM 4 O O5B NDP . . . F 4 -23.274 -36.226 7.272 1 41.4 ? O5B NDP 300 C 1 
HETATM 5 C C5B NDP . . . F 4 -22.545 -37.073 6.419 1 44.57 ? C5B NDP 300 C 1 
HETATM 6 C C4B NDP . . . F 4 -22.895 -36.735 4.974 1 47.7 ? C4B NDP 300 C 1 
HETATM 7 O O4B NDP . . . F 4 -22.088 -35.665 4.497 1 46.91 ? O4B NDP 300 C 1 
HETATM 8 C C3B NDP . . . F 4 -22.681 -37.937 4.062 1 50.21 ? C3B NDP 300 C 1 
HETATM 9 O O3B NDP . . . F 4 -23.88 -38.286 3.401 1 50.23 ? O3B NDP 300 C 1 
HETATM 10 C C2B NDP . . . F 4 -21.599 -37.491 3.102 1 51.56 ? C2B NDP 300 C 1 
HETATM 11 O O2B NDP . . . F 4 -21.877 -37.928 1.793 1 56.89 ? O2B NDP 300 C 1 
HETATM 12 C C1B NDP . . . F 4 -21.572 -35.967 3.213 1 48.12 ? C1B NDP 300 C 1 
HETATM 13 N N9A NDP . . . F 4 -20.209 -35.427 2.99 1 44.58 ? N9A NDP 300 C 1 
HETATM 14 C C8A NDP . . . F 4 -19.026 -35.858 3.537 1 43.13 ? C8A NDP 300 C 1 
HETATM 15 N N7A NDP . . . F 4 -18.017 -35.098 3.056 1 41.95 ? N7A NDP 300 C 1 
HETATM 16 C C5A NDP . . . F 4 -18.529 -34.184 2.208 1 41.41 ? C5A NDP 300 C 1 
HETATM 17 C C6A NDP . . . F 4 -17.941 -33.175 1.458 1 40.48 ? C6A NDP 300 C 1 
HETATM 18 N N6A NDP . . . F 4 -16.619 -33.11 1.365 1 43.16 ? N6A NDP 300 C 1 
HETATM 19 N N1A NDP . . . F 4 -18.729 -32.373 0.661 1 39.63 ? N1A NDP 300 C 1 
HETATM 20 C C2A NDP . . . F 4 -20.093 -32.583 0.618 1 42.11 ? C2A NDP 300 C 1 
HETATM 21 N N3A NDP . . . F 4 -20.668 -33.585 1.373 1 43.42 ? N3A NDP 300 C 1 
HETATM 22 C C4A NDP . . . F 4 -19.901 -34.381 2.154 1 43.4 ? C4A NDP 300 C 1 
HETATM 23 O O3 NDP . . . F 4 -25.571 -35.271 7.763 1 35.02 ? O3 NDP 300 C 1 
HETATM 24 P PN NDP . . . F 4 -25.832 -34.277 9.01 1 34.06 ? PN NDP 300 C 1 
HETATM 25 O O1N NDP . . . F 4 -26.758 -33.224 8.548 1 32.47 ? O1N NDP 300 C 1 
HETATM 26 O O2N NDP . . . F 4 -24.539 -33.856 9.585 1 33.87 ? O2N NDP 300 C 1 
HETATM 27 O O5D NDP . . . F 4 -26.584 -35.25 10.061 1 33.44 ? O5D NDP 300 C 1 
HETATM 28 C C5D NDP . . . F 4 -26.342 -35.257 11.457 1 31.3 ? C5D NDP 300 C 1 
HETATM 29 C C4D NDP . . . F 4 -26.167 -36.692 11.965 1 29.79 ? C4D NDP 300 C 1 
HETATM 30 O O4D NDP . . . F 4 -25.04 -36.755 12.825 1 28.86 ? O4D NDP 300 C 1 
HETATM 31 C C3D NDP . . . F 4 -27.356 -37.238 12.752 1 28.93 ? C3D NDP 300 C 1 
HETATM 32 O O3D NDP . . . F 4 -27.707 -38.527 12.299 1 29.08 ? O3D NDP 300 C 1 
HETATM 33 C C2D NDP . . . F 4 -26.876 -37.327 14.179 1 27.71 ? C2D NDP 300 C 1 
HETATM 34 O O2D NDP . . . F 4 -27.425 -38.436 14.849 1 24.85 ? O2D NDP 300 C 1 
HETATM 35 C C1D NDP . . . F 4 -25.375 -37.472 14.002 1 28.86 ? C1D NDP 300 C 1 
HETATM 36 N N1N NDP . . . F 4 -24.665 -36.997 15.201 1 28.22 ? N1N NDP 300 C 1 
HETATM 37 C C2N NDP . . . F 4 -24.61 -35.663 15.462 1 26.42 ? C2N NDP 300 C 1 
HETATM 38 C C3N NDP . . . F 4 -23.951 -35.188 16.587 1 26.92 ? C3N NDP 300 C 1 
HETATM 39 C C7N NDP . . . F 4 -24.003 -33.737 16.963 1 25.96 ? C7N NDP 300 C 1 
HETATM 40 O O7N NDP . . . F 4 -23.82 -33.405 18.319 1 28.12 ? O7N NDP 300 C 1 
HETATM 41 N N7N NDP . . . F 4 -24.207 -32.78 16.053 1 25.24 ? N7N NDP 300 C 1 
HETATM 42 C C4N NDP . . . F 4 -23.35 -36.098 17.452 1 29.19 ? C4N NDP 300 C 1 
HETATM 43 C C5N NDP . . . F 4 -23.413 -37.458 17.177 1 30.21 ? C5N NDP 300 C 1 
HETATM 44 C C6N NDP . . . F 4 -24.079 -37.9 16.043 1 28.93 ? C6N NDP 300 C 1 
HETATM 45 P P2B NDP . . . F 4 -20.701 -38.422 0.815 1 57.86 ? P2B NDP 300 C 1 
HETATM 46 O O1X NDP . . . F 4 -21.345 -38.916 -0.453 1 58.74 ? O1X NDP 300 C 1 
HETATM 47 O O2X NDP . . . F 4 -19.828 -37.237 0.488 1 57.87 ? O2X NDP 300 C 1 
HETATM 48 O O3X NDP . . . F 4 -19.903 -39.532 1.459 1 57 ? O3X NDP 300 C 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           467 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#